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Conserved domains on  [gi|1125815873|gb|APQ49737|]
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hypothetical protein BSO20_06515 [Bacillus amyloliquefaciens]

Protein Classification

spore germination protein( domain architecture ID 18824304)

spore germination protein plays a a role in the establishment of normal spore coat structure and/or permeability

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GerPA COG5906
Spore germination protein GerPA/GerPF (inner spore coat) [Cell cycle control, cell division, ...
 1-72 2.90e-23

Spore germination protein GerPA/GerPF (inner spore coat) [Cell cycle control, cell division, chromosome partitioning];


:

Pssm-ID: 444608  Cd Length: 73  Bit Score: 83.46  E-value: 2.90e-23
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1125815873  1 MPAITGPIAINSI-SGGVVNFGDSFYLSPKSSSKSALGSGAGNTGDFLLLNNVVNATNYIDPDVSDQNVVGNA 72
Cdd:COG5906    1 MPAIVGPIKINSVsSSGVVNFGDVLNISPKSVAKTFAGSGSFNTGDFLNTNNGISATNTFDPDVADQNVVGNA 73
 
Name Accession Description Interval E-value
GerPA COG5906
Spore germination protein GerPA/GerPF (inner spore coat) [Cell cycle control, cell division, ...
 1-72 2.90e-23

Spore germination protein GerPA/GerPF (inner spore coat) [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444608  Cd Length: 73  Bit Score: 83.46  E-value: 2.90e-23
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1125815873  1 MPAITGPIAINSI-SGGVVNFGDSFYLSPKSSSKSALGSGAGNTGDFLLLNNVVNATNYIDPDVSDQNVVGNA 72
Cdd:COG5906    1 MPAIVGPIKINSVsSSGVVNFGDVLNISPKSVAKTFAGSGSFNTGDFLNTNNGISATNTFDPDVADQNVVGNA 73
gerPA pfam10676
Spore germination protein gerPA/gerPF; This is a bacterial family of proteins that are ...
 1-68 4.30e-20

Spore germination protein gerPA/gerPF; This is a bacterial family of proteins that are required for the formation of functionally normal spores. Proteins in this family may be involved in establishing normal coat structure and/or permeability which could control the access of germinants to their receptor.


Pssm-ID: 371190  Cd Length: 69  Bit Score: 75.36  E-value: 4.30e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1125815873  1 MPAITGPIAINSISG-GVVNFGDSFYLSPKSSSKSALGSGAGNTGDFLLLNNVVNATNYIDPDVSDQNV 68
Cdd:pfam10676  1 MPAIVGPIKINSVGSnGVVNIGDVLAISPKSNSKSYAGAGSFNTGDFLSTNNAVSATNTFDPDVIDQNQ 69
 
Name Accession Description Interval E-value
GerPA COG5906
Spore germination protein GerPA/GerPF (inner spore coat) [Cell cycle control, cell division, ...
 1-72 2.90e-23

Spore germination protein GerPA/GerPF (inner spore coat) [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444608  Cd Length: 73  Bit Score: 83.46  E-value: 2.90e-23
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1125815873  1 MPAITGPIAINSI-SGGVVNFGDSFYLSPKSSSKSALGSGAGNTGDFLLLNNVVNATNYIDPDVSDQNVVGNA 72
Cdd:COG5906    1 MPAIVGPIKINSVsSSGVVNFGDVLNISPKSVAKTFAGSGSFNTGDFLNTNNGISATNTFDPDVADQNVVGNA 73
gerPA pfam10676
Spore germination protein gerPA/gerPF; This is a bacterial family of proteins that are ...
 1-68 4.30e-20

Spore germination protein gerPA/gerPF; This is a bacterial family of proteins that are required for the formation of functionally normal spores. Proteins in this family may be involved in establishing normal coat structure and/or permeability which could control the access of germinants to their receptor.


Pssm-ID: 371190  Cd Length: 69  Bit Score: 75.36  E-value: 4.30e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1125815873  1 MPAITGPIAINSISG-GVVNFGDSFYLSPKSSSKSALGSGAGNTGDFLLLNNVVNATNYIDPDVSDQNV 68
Cdd:pfam10676  1 MPAIVGPIKINSVGSnGVVNIGDVLAISPKSNSKSYAGAGSFNTGDFLSTNNAVSATNTFDPDVIDQNQ 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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