|
Name |
Accession |
Description |
Interval |
E-value |
| transpos_IS481 |
NF033577 |
IS481 family transposase; null |
1-288 |
6.19e-115 |
|
IS481 family transposase; null
Pssm-ID: 468094 [Multi-domain] Cd Length: 283 Bit Score: 332.63 E-value: 6.19e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 1 MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRK-RLTQARIAQA 79
Cdd:NF033577 5 LVRLVLEDGWSVREAARRFGISRKTVYKWLKRYRAGGEEGLIDRSRRPHRSPRRTSPETEARILALRRElRLGPRRIAYE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 80 L-----GVSASTVSRVLARAGLSHLADLEPAEP-VVRYEHQAPGDLLHIDIKKLGRIQrpghrvtgnrrdtveGAGWDFV 153
Cdd:NF033577 85 LerqgpGVSRSTVHRILRRHGLSRLRALDRKTGkVKRYERAHPGELWHIDIKKLGRIP---------------DVGRLYL 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 154 FVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAyyqRLGVTIQRLLTDNGSAFRSRA--FAALCHELGIKHRFTRPYRPQ 231
Cdd:NF033577 150 HTAIDDHSRFAYAELYPDETAETAADFLRRAFA---EHGIPIRRVLTDNGSEFRSRAhgFELALAELGIEHRRTRPYHPQ 226
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1141802939 232 TNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRL 288
Cdd:NF033577 227 TNGKVERFHRTLKDEFAYARPYESLAELQAALDEWLHHYNHHRPHSALGGKTPAERF 283
|
|
| Tra5 |
COG2801 |
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]; |
70-285 |
3.95e-28 |
|
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442053 [Multi-domain] Cd Length: 309 Bit Score: 110.24 E-value: 3.95e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 70 RLTQARIAQALGVSASTVSRVLARAGL-----------SHLADLEPAEPVVRYEHQAPGDLLHIDIKKLgriqrpghRVT 138
Cdd:COG2801 91 RITAELRREGIAVNRKRVRRLMRELGLqarrrrkkkytTYSGHGGPIAPNLLFTATAPNQVWVTDITYI--------PTA 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 139 GnrrdtvegaGWDFVFVAIDDHAR--VAFtDIPPDERFPSAVQFLKDAVAYYQRLGVTIqrLLTDNGSAFRSRAFAALCH 216
Cdd:COG2801 163 E---------GWLYLAAVIDLFSReiVGW-SVSDSMDAELVVDALEMAIERRGPPKPLI--LHSDNGSQYTSKAYQELLK 230
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1141802939 217 ELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPI 285
Cdd:COG2801 231 KLGITQSMSRPGNPQDNAFIESFFGTLKYELLYRRRFESLEEAREAIEEYIEFYNHERPHSSLGYLTPA 299
|
|
| transpos_IS3 |
NF033516 |
IS3 family transposase; |
2-280 |
2.47e-27 |
|
IS3 family transposase;
Pssm-ID: 468052 [Multi-domain] Cd Length: 369 Bit Score: 109.19 E-value: 2.47e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 2 VQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSP-------------------------RAIA 56
Cdd:NF033516 7 VREVLEGGKSVAEVARELGISPSTLYRWRKKYRGGGEAADAGRLKELLTPEeeenrrlkrelaelrleneilkkarKLLR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 57 PAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPG---------DLL-----HI 122
Cdd:NF033516 87 PAVKYALIDALRGEYSVRRACRVLGVSRSTYYYWRKRPPSRRAPDDAELRARIREIFEESRgrygyrritALLrregiRV 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 123 DIKKLGRI---------QRPGHRVTGNRRDTVE-----------------------------GAGWDFVFVAIDDHAR-- 162
Cdd:NF033516 167 NHKRVYRLmrelgllarRRRKRRPYTTDSGHVHpvapnllnrqftatrpnqvwvtdityirtAEGWLYLAVVLDLFSRei 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 163 VAFTdipPDERFPS--AVQFLKDAVAYYQRLGVTIqrLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFI 240
Cdd:NF033516 247 VGWS---VSTSMSAelVLDALEMAIEWRGKPEGLI--LHSDNGSQYTSKAYREWLKEHGITQSMSRPGNCWDNAVAESFF 321
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1141802939 241 QSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIG 280
Cdd:NF033516 322 GTLKRECLYRRRFRTLEEARQAIEEYIEFYNHERPHSSLG 361
|
|
| rve_3 |
pfam13683 |
Integrase core domain; |
218-284 |
4.34e-19 |
|
Integrase core domain;
Pssm-ID: 433402 [Multi-domain] Cd Length: 67 Bit Score: 79.18 E-value: 4.34e-19
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1141802939 218 LGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVP 284
Cdd:pfam13683 1 LGIEISYIAPGKPMQNGLVESFNGTLRDECLNEHLFSSLAEARALLAAWREDYNTERPHSSLGYRTP 67
|
|
| transpos_IS21 |
NF033546 |
IS21 family transposase; |
14-288 |
1.80e-16 |
|
IS21 family transposase;
Pssm-ID: 468077 [Multi-domain] Cd Length: 296 Bit Score: 78.02 E-value: 1.80e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 14 EAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQAL-----GVSASTVS 88
Cdd:NF033546 13 EIARELGISRNTVRKYLRRAGLDEPPKYERRPPRPSKLDPFEPYIPDWLEAHLRKPGVTATLLWEELraegyPGSYSTVR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 89 RVLARaglsHLADLEPAEPVVRYEHqAPGDLLHIDIKKLGRIqrpghrVTGNRRDTVEgagwdfVFVAIDDHARVAFTDI 168
Cdd:NF033546 93 RYVRR----WRAEQGPAKVFVRLEH-APGEQAQVDFGEATVV------VTGGTGKILH------VFVAVLGYSRYTYVEA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 169 PPDERFPSAVQFLKDAVAYyqrLGVTIQRLLTDN-GSAFR----------SRAFAALCHELGIKHRFTRPYRPQTNGKAE 237
Cdd:NF033546 156 TPSESQEDLLDGHQRAFEF---FGGVPREIVYDNlKTAVDkrdryeeprlNPRFAAFAAHYGFEPRPCRPYRPQEKGKVE 232
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1141802939 238 RFIQSaLREW---AYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRaVPISRL 288
Cdd:NF033546 233 RAVGY-VRRWflrLRGRRFESLAELNAALAEWLAELANQRPHGTTGG-SPAERF 284
|
|
| transpos_IS630 |
NF033545 |
IS630 family transposase; |
14-268 |
5.73e-13 |
|
IS630 family transposase;
Pssm-ID: 468076 [Multi-domain] Cd Length: 298 Bit Score: 67.67 E-value: 5.73e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 14 EAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPtvSPRAIAPAKALAIVELRRK-----------RLTQARIAQALGV 82
Cdd:NF033545 17 EIAERLGVSRSTVYRWLKRFNEGGLEGLLDKPRPG--RPRKLLSEQQAELLALLLEeppegaghwtlRELAALLEEEFGV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 83 --SASTVSRVLARAGLS--------HLADLEPAEPV--VRYEHQAPGD---LLHID------IKKLGRI-----QRPGHR 136
Cdd:NF033545 95 eySRSTVRRLLKRLGLSpkkprpraPKQDPEFVEKFkeVLGLYRAPPDpaeVVFIDesgiqlLDTRGRGwapkgQRRPRV 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 137 VTGNRRDTVEgagwdfVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTiqrLLTDNGSAFRSRAFAALCH 216
Cdd:NF033545 175 HVYGRRGTLN------LFGALDPLTGKVFVLFTGRINSEDFIEFLEELLAAYPGKKIH---LILDNASTHKSKKVREWLE 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1141802939 217 ELG-IKHRFTRPYRPQTNgKAERFIQSALREWAYAHTYQNSQHRADAMKSWLH 268
Cdd:NF033545 246 EHGrIELHYLPPYSPWLN-PIERVWAVLKRRLLRNRAFRSVDELREAIDAFLN 297
|
|
| PHA02517 |
PHA02517 |
putative transposase OrfB; Reviewed |
82-284 |
7.62e-11 |
|
putative transposase OrfB; Reviewed
Pssm-ID: 222853 [Multi-domain] Cd Length: 277 Bit Score: 61.42 E-value: 7.62e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 82 VSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKklgrIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHA 161
Cdd:PHA02517 62 VARCTVGRLMKELGLAGVLRGKKVRTTISRKAVAAPDRVNRQFV----ATRPNQLWVADFTYVSTWQGWVYVAFIIDVFA 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 162 R------VAFTdipPDERFpsAVQFLKDAVAYYQRLGVTIQRllTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGK 235
Cdd:PHA02517 138 RrivgwrVSSS---MDTDF--VLDALEQALWARGRPGGLIHH--SDKGSQYVSLAYTQRLKEAGIRASTGSRGDSYDNAP 210
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1141802939 236 AERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVP 284
Cdd:PHA02517 211 AESINGLYKAEVIHRVSWKNREEVELATLEWVAWYNNRRLHERLGYTPP 259
|
|
| transpos_ISNCY_2 |
NF033594 |
ISNCY family transposase; The ISNCY insertion sequence family, as defined by ISFinder, encodes ... |
2-238 |
9.63e-08 |
|
ISNCY family transposase; The ISNCY insertion sequence family, as defined by ISFinder, encodes several apparently unrelated families of transposases. Members of this family resemble the transposases of ISNCY family elements such as IS1202, ISTde1, ISKpn21, and ISCARN1.
Pssm-ID: 468103 [Multi-domain] Cd Length: 367 Bit Score: 52.48 E-value: 9.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 2 VQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADAS-SRPtvSPRAIAPAKALAIVELRRKR-----LTQAR 75
Cdd:NF033594 3 IQKVVDGRLTVKEAAELLGLSERQVRRLLKRYREEGAAGLVHGNrGRP--PNNRLPDELRERVLALYRERyydfgPTLAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 76 IAQA----LGVSASTVSRVLARAGLshladLEPAE---PVV---RYEHQAPGDLLHIDikklgriqrpghrvtGNRRDTV 145
Cdd:NF033594 81 EKLRerhgISLSRETVRRWMIEAGL-----WSPRKqrrPKVhqpRERRACFGELIQID---------------GSPHDWF 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 146 EGAGWDF-VFVAIDD------HARvaFTdipPDERFPSAVQFLKdavAYYQRLGVTIQrLLTDNGSAFRSRA-------- 210
Cdd:NF033594 141 EGRGPKCtLLVAIDDatgrlmGLR--FV---ESESTFGYFEVTR---QYLEKHGKPVA-FYSDKHSVFRVNEeelagkgd 211
|
250 260 270
....*....|....*....|....*....|..
gi 1141802939 211 ----FAALCHELGIKHRFTrpYRPQTNGKAER 238
Cdd:NF033594 212 gltqFGRALKELGIEIICA--NSPQAKGRVER 241
|
|
| HTH_ARSR |
cd00090 |
Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric ... |
53-96 |
1.87e-03 |
|
Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Pssm-ID: 238042 [Multi-domain] Cd Length: 78 Bit Score: 36.51 E-value: 1.87e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1141802939 53 RAIAPAKALAIVE-LRRKRLTQARIAQALGVSASTVS---RVLARAGL 96
Cdd:cd00090 2 KALSDPTRLRILRlLLEGPLTVSELAERLGLSQSTVSrhlKKLEEAGL 49
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| transpos_IS481 |
NF033577 |
IS481 family transposase; null |
1-288 |
6.19e-115 |
|
IS481 family transposase; null
Pssm-ID: 468094 [Multi-domain] Cd Length: 283 Bit Score: 332.63 E-value: 6.19e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 1 MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRK-RLTQARIAQA 79
Cdd:NF033577 5 LVRLVLEDGWSVREAARRFGISRKTVYKWLKRYRAGGEEGLIDRSRRPHRSPRRTSPETEARILALRRElRLGPRRIAYE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 80 L-----GVSASTVSRVLARAGLSHLADLEPAEP-VVRYEHQAPGDLLHIDIKKLGRIQrpghrvtgnrrdtveGAGWDFV 153
Cdd:NF033577 85 LerqgpGVSRSTVHRILRRHGLSRLRALDRKTGkVKRYERAHPGELWHIDIKKLGRIP---------------DVGRLYL 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 154 FVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAyyqRLGVTIQRLLTDNGSAFRSRA--FAALCHELGIKHRFTRPYRPQ 231
Cdd:NF033577 150 HTAIDDHSRFAYAELYPDETAETAADFLRRAFA---EHGIPIRRVLTDNGSEFRSRAhgFELALAELGIEHRRTRPYHPQ 226
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1141802939 232 TNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRL 288
Cdd:NF033577 227 TNGKVERFHRTLKDEFAYARPYESLAELQAALDEWLHHYNHHRPHSALGGKTPAERF 283
|
|
| Tra5 |
COG2801 |
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]; |
70-285 |
3.95e-28 |
|
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442053 [Multi-domain] Cd Length: 309 Bit Score: 110.24 E-value: 3.95e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 70 RLTQARIAQALGVSASTVSRVLARAGL-----------SHLADLEPAEPVVRYEHQAPGDLLHIDIKKLgriqrpghRVT 138
Cdd:COG2801 91 RITAELRREGIAVNRKRVRRLMRELGLqarrrrkkkytTYSGHGGPIAPNLLFTATAPNQVWVTDITYI--------PTA 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 139 GnrrdtvegaGWDFVFVAIDDHAR--VAFtDIPPDERFPSAVQFLKDAVAYYQRLGVTIqrLLTDNGSAFRSRAFAALCH 216
Cdd:COG2801 163 E---------GWLYLAAVIDLFSReiVGW-SVSDSMDAELVVDALEMAIERRGPPKPLI--LHSDNGSQYTSKAYQELLK 230
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1141802939 217 ELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPI 285
Cdd:COG2801 231 KLGITQSMSRPGNPQDNAFIESFFGTLKYELLYRRRFESLEEAREAIEEYIEFYNHERPHSSLGYLTPA 299
|
|
| transpos_IS3 |
NF033516 |
IS3 family transposase; |
2-280 |
2.47e-27 |
|
IS3 family transposase;
Pssm-ID: 468052 [Multi-domain] Cd Length: 369 Bit Score: 109.19 E-value: 2.47e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 2 VQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSP-------------------------RAIA 56
Cdd:NF033516 7 VREVLEGGKSVAEVARELGISPSTLYRWRKKYRGGGEAADAGRLKELLTPEeeenrrlkrelaelrleneilkkarKLLR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 57 PAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPG---------DLL-----HI 122
Cdd:NF033516 87 PAVKYALIDALRGEYSVRRACRVLGVSRSTYYYWRKRPPSRRAPDDAELRARIREIFEESRgrygyrritALLrregiRV 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 123 DIKKLGRI---------QRPGHRVTGNRRDTVE-----------------------------GAGWDFVFVAIDDHAR-- 162
Cdd:NF033516 167 NHKRVYRLmrelgllarRRRKRRPYTTDSGHVHpvapnllnrqftatrpnqvwvtdityirtAEGWLYLAVVLDLFSRei 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 163 VAFTdipPDERFPS--AVQFLKDAVAYYQRLGVTIqrLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFI 240
Cdd:NF033516 247 VGWS---VSTSMSAelVLDALEMAIEWRGKPEGLI--LHSDNGSQYTSKAYREWLKEHGITQSMSRPGNCWDNAVAESFF 321
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1141802939 241 QSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIG 280
Cdd:NF033516 322 GTLKRECLYRRRFRTLEEARQAIEEYIEFYNHERPHSSLG 361
|
|
| Tra8 |
COG2826 |
Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons]; |
1-277 |
1.47e-19 |
|
Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];
Pssm-ID: 442074 [Multi-domain] Cd Length: 325 Bit Score: 86.86 E-value: 1.47e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 1 MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGR---------FLAQGQAglADASSRPTVSPRAIAPAKALAIVELR-RKR 70
Cdd:COG2826 14 EIEALLKAGLSVREIARRLGRSPSTISRELKRnsgrrgyraEGAQRLA--EDRRRRPKRKRKLATTPELRAYVEEKlRKK 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 71 LTQARIAQAL--------GVSASTVSRVLARAGLSH-LADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPgHRVTGNR 141
Cdd:COG2826 92 WSPEQIAGRLkreddpgmRVSHETIYRYIYAGGLRKdLYRPLRRKRKRRRPRGRTRKRRGKIPDRRSISERP-AEVEDRA 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 142 R------DTVEGA-GWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLgvTIQRLLTDNGSAFRsrAFAAL 214
Cdd:COG2826 171 EpghwegDLIIGKrGKSALLTLVERKSRFVILLKLPDKTAESVADALIRLLRKLPAF--LRKSITTDNGKEFA--DHKEI 246
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1141802939 215 CHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYqnSQHRADAMKSWLHHYNwHRPHQ 277
Cdd:COG2826 247 EAALGIKVYFADPYSPWQRGTNENTNGLLRQYFPKGTDF--STVTQEELDAIADRLN-NRPRK 306
|
|
| rve_3 |
pfam13683 |
Integrase core domain; |
218-284 |
4.34e-19 |
|
Integrase core domain;
Pssm-ID: 433402 [Multi-domain] Cd Length: 67 Bit Score: 79.18 E-value: 4.34e-19
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1141802939 218 LGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVP 284
Cdd:pfam13683 1 LGIEISYIAPGKPMQNGLVESFNGTLRDECLNEHLFSSLAEARALLAAWREDYNTERPHSSLGYRTP 67
|
|
| transpos_IS21 |
NF033546 |
IS21 family transposase; |
14-288 |
1.80e-16 |
|
IS21 family transposase;
Pssm-ID: 468077 [Multi-domain] Cd Length: 296 Bit Score: 78.02 E-value: 1.80e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 14 EAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQAL-----GVSASTVS 88
Cdd:NF033546 13 EIARELGISRNTVRKYLRRAGLDEPPKYERRPPRPSKLDPFEPYIPDWLEAHLRKPGVTATLLWEELraegyPGSYSTVR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 89 RVLARaglsHLADLEPAEPVVRYEHqAPGDLLHIDIKKLGRIqrpghrVTGNRRDTVEgagwdfVFVAIDDHARVAFTDI 168
Cdd:NF033546 93 RYVRR----WRAEQGPAKVFVRLEH-APGEQAQVDFGEATVV------VTGGTGKILH------VFVAVLGYSRYTYVEA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 169 PPDERFPSAVQFLKDAVAYyqrLGVTIQRLLTDN-GSAFR----------SRAFAALCHELGIKHRFTRPYRPQTNGKAE 237
Cdd:NF033546 156 TPSESQEDLLDGHQRAFEF---FGGVPREIVYDNlKTAVDkrdryeeprlNPRFAAFAAHYGFEPRPCRPYRPQEKGKVE 232
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1141802939 238 RFIQSaLREW---AYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRaVPISRL 288
Cdd:NF033546 233 RAVGY-VRRWflrLRGRRFESLAELNAALAEWLAELANQRPHGTTGG-SPAERF 284
|
|
| rve |
pfam00665 |
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into ... |
116-230 |
1.00e-15 |
|
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.
Pssm-ID: 459897 [Multi-domain] Cd Length: 98 Bit Score: 71.19 E-value: 1.00e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 116 PGDLLHIDIKKLGRIQrpghrvtgnrrdtveGAGWDFVFVAIDDHARVAFTDIPPDE-RFPSAVQFLKDAVAYYqrlGVT 194
Cdd:pfam00665 1 PNQLWQGDFTYIRIPG---------------GGGKLYLLVIVDDFSREILAWALSSEmDAELVLDALERAIAFR---GGV 62
|
90 100 110
....*....|....*....|....*....|....*.
gi 1141802939 195 IQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRP 230
Cdd:pfam00665 63 PLIIHSDNGSEYTSKAFREFLKDLGIKPSFSRPGNP 98
|
|
| transpos_IS630 |
NF033545 |
IS630 family transposase; |
14-268 |
5.73e-13 |
|
IS630 family transposase;
Pssm-ID: 468076 [Multi-domain] Cd Length: 298 Bit Score: 67.67 E-value: 5.73e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 14 EAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPtvSPRAIAPAKALAIVELRRK-----------RLTQARIAQALGV 82
Cdd:NF033545 17 EIAERLGVSRSTVYRWLKRFNEGGLEGLLDKPRPG--RPRKLLSEQQAELLALLLEeppegaghwtlRELAALLEEEFGV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 83 --SASTVSRVLARAGLS--------HLADLEPAEPV--VRYEHQAPGD---LLHID------IKKLGRI-----QRPGHR 136
Cdd:NF033545 95 eySRSTVRRLLKRLGLSpkkprpraPKQDPEFVEKFkeVLGLYRAPPDpaeVVFIDesgiqlLDTRGRGwapkgQRRPRV 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 137 VTGNRRDTVEgagwdfVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTiqrLLTDNGSAFRSRAFAALCH 216
Cdd:NF033545 175 HVYGRRGTLN------LFGALDPLTGKVFVLFTGRINSEDFIEFLEELLAAYPGKKIH---LILDNASTHKSKKVREWLE 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1141802939 217 ELG-IKHRFTRPYRPQTNgKAERFIQSALREWAYAHTYQNSQHRADAMKSWLH 268
Cdd:NF033545 246 EHGrIELHYLPPYSPWLN-PIERVWAVLKRRLLRNRAFRSVDELREAIDAFLN 297
|
|
| Csa3 |
COG3415 |
CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; CRISPR-associated protein ... |
4-277 |
1.59e-12 |
|
CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; CRISPR-associated protein Csa3, CARF domain is part of the Pathway/BioSystem: CRISPR-Cas system
Pssm-ID: 442641 [Multi-domain] Cd Length: 325 Bit Score: 66.80 E-value: 1.59e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 4 QLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPtvSPRAIAPAKALAIVELRRK-------RLTQARI 76
Cdd:COG3415 33 LLLAEGLSVREIAERLGVSRSTVYRWLKRYREGGLAGLKDRPRGG--RPSKLSDEQRERLLELLREkspdqgsRWTLAEL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 77 AQALG------VSASTVSRVLARAGLSHLAD---LEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG 147
Cdd:COG3415 111 AELLEeefgveVSPSTVRRLLKRLGLSYKKPrprAPKQDPEAVEKFKKELEALLAKPAKAEVAGVDEGDEIGALRRAAGG 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 148 AGWDFVFVAIDDHARVaftdippdeRFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRP 227
Cdd:COG3415 191 RLLAPGGRVRRTGASV---------RRGRALLFLALGLALGLRIGLTIDALLAGALLLFLRLLAERALALLLLLLLLLLL 261
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1141802939 228 YRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQ 277
Cdd:COG3415 262 SPSKAVARAAKLLKLELLRLLFLPPSASLLLALEALLRELRERNLLRLAH 311
|
|
| PHA02517 |
PHA02517 |
putative transposase OrfB; Reviewed |
82-284 |
7.62e-11 |
|
putative transposase OrfB; Reviewed
Pssm-ID: 222853 [Multi-domain] Cd Length: 277 Bit Score: 61.42 E-value: 7.62e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 82 VSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKklgrIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHA 161
Cdd:PHA02517 62 VARCTVGRLMKELGLAGVLRGKKVRTTISRKAVAAPDRVNRQFV----ATRPNQLWVADFTYVSTWQGWVYVAFIIDVFA 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 162 R------VAFTdipPDERFpsAVQFLKDAVAYYQRLGVTIQRllTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGK 235
Cdd:PHA02517 138 RrivgwrVSSS---MDTDF--VLDALEQALWARGRPGGLIHH--SDKGSQYVSLAYTQRLKEAGIRASTGSRGDSYDNAP 210
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1141802939 236 AERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVP 284
Cdd:PHA02517 211 AESINGLYKAEVIHRVSWKNREEVELATLEWVAWYNNRRLHERLGYTPP 259
|
|
| LZ_Tnp_IS481 |
pfam13011 |
leucine-zipper of insertion element IS481; This is the upstream region of the conjoined ORF AB ... |
1-69 |
6.12e-09 |
|
leucine-zipper of insertion element IS481; This is the upstream region of the conjoined ORF AB of insertion element 481. The significance of IS481 in the detection of Bordetella pertussis is discussed in. The B portion of the ORF AB carries the transposase activity in family rve, pfam00665.
Pssm-ID: 289759 [Multi-domain] Cd Length: 85 Bit Score: 52.36 E-value: 6.12e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1141802939 1 MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRK 69
Cdd:pfam13011 17 LVNRVMEDNRPMAHAAQAAGVSLQCAHKWLARFRAEGLDGLLDRSSRPHRSPKACAPEQEEAFAEARAQ 85
|
|
| HTH_32 |
pfam13565 |
Homeodomain-like domain; |
25-91 |
4.99e-08 |
|
Homeodomain-like domain;
Pssm-ID: 463923 [Multi-domain] Cd Length: 73 Bit Score: 49.22 E-value: 4.99e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1141802939 25 TVRKWLGRFLAQGQAGLADASSRPtvSPRAIAPAKALAIVELRRK--RLTQARIAQAL------GVSASTVSRVL 91
Cdd:pfam13565 1 TVYRWRKRYNEEGLEGLEDRPRRG--RPRKLTDEQEARLLALLCEepRWSPRLLAERLeeefgvKVSRSTVRRIL 73
|
|
| transpos_ISNCY_2 |
NF033594 |
ISNCY family transposase; The ISNCY insertion sequence family, as defined by ISFinder, encodes ... |
2-238 |
9.63e-08 |
|
ISNCY family transposase; The ISNCY insertion sequence family, as defined by ISFinder, encodes several apparently unrelated families of transposases. Members of this family resemble the transposases of ISNCY family elements such as IS1202, ISTde1, ISKpn21, and ISCARN1.
Pssm-ID: 468103 [Multi-domain] Cd Length: 367 Bit Score: 52.48 E-value: 9.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 2 VQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADAS-SRPtvSPRAIAPAKALAIVELRRKR-----LTQAR 75
Cdd:NF033594 3 IQKVVDGRLTVKEAAELLGLSERQVRRLLKRYREEGAAGLVHGNrGRP--PNNRLPDELRERVLALYRERyydfgPTLAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 76 IAQA----LGVSASTVSRVLARAGLshladLEPAE---PVV---RYEHQAPGDLLHIDikklgriqrpghrvtGNRRDTV 145
Cdd:NF033594 81 EKLRerhgISLSRETVRRWMIEAGL-----WSPRKqrrPKVhqpRERRACFGELIQID---------------GSPHDWF 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 146 EGAGWDF-VFVAIDD------HARvaFTdipPDERFPSAVQFLKdavAYYQRLGVTIQrLLTDNGSAFRSRA-------- 210
Cdd:NF033594 141 EGRGPKCtLLVAIDDatgrlmGLR--FV---ESESTFGYFEVTR---QYLEKHGKPVA-FYSDKHSVFRVNEeelagkgd 211
|
250 260 270
....*....|....*....|....*....|..
gi 1141802939 211 ----FAALCHELGIKHRFTrpYRPQTNGKAER 238
Cdd:NF033594 212 gltqFGRALKELGIEIICA--NSPQAKGRVER 241
|
|
| PRK09409 |
PRK09409 |
IS2 transposase TnpB; Reviewed |
199-284 |
8.43e-06 |
|
IS2 transposase TnpB; Reviewed
Pssm-ID: 181829 [Multi-domain] Cd Length: 301 Bit Score: 46.63 E-value: 8.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 199 LTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYN-WHrPHQ 277
Cdd:PRK09409 196 LTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNeWH-PHS 274
|
....*..
gi 1141802939 278 GIGRAVP 284
Cdd:PRK09409 275 ALGYRSP 281
|
|
| PRK14702 |
PRK14702 |
insertion element IS2 transposase InsD; Provisional |
199-284 |
8.60e-06 |
|
insertion element IS2 transposase InsD; Provisional
Pssm-ID: 237792 [Multi-domain] Cd Length: 262 Bit Score: 46.26 E-value: 8.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1141802939 199 LTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYN-WHrPHQ 277
Cdd:PRK14702 157 LTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNeWH-PHS 235
|
....*..
gi 1141802939 278 GIGRAVP 284
Cdd:PRK14702 236 ALGYRSP 242
|
|
| HTH_28 |
pfam13518 |
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is ... |
4-48 |
8.65e-06 |
|
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.
Pssm-ID: 463908 [Multi-domain] Cd Length: 52 Bit Score: 42.19 E-value: 8.65e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 1141802939 4 QLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRP 48
Cdd:pfam13518 7 LLALEGESIKEAARLFGISRSTVYRWIRRYREGGLEGLLPRRRRP 51
|
|
| COG2512 |
COG2512 |
Predicted transcriptional regulator, contains CW (cell wall-binding) repeats and an HTH domain ... |
59-93 |
8.36e-05 |
|
Predicted transcriptional regulator, contains CW (cell wall-binding) repeats and an HTH domain [General function prediction only];
Pssm-ID: 442002 [Multi-domain] Cd Length: 80 Bit Score: 40.28 E-value: 8.36e-05
10 20 30
....*....|....*....|....*....|....*
gi 1141802939 59 KALAIVELRRKRLTQARIAQALGVSASTVSRVLAR 93
Cdd:COG2512 19 RVLELLRENGGRMTQSEIVKETGWSKSKVSRLLSR 53
|
|
| InsE |
COG2963 |
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; |
1-75 |
2.01e-04 |
|
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442203 [Multi-domain] Cd Length: 93 Bit Score: 39.52 E-value: 2.01e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1141802939 1 MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRaiapakalaIVELRR--KRLTQAR 75
Cdd:COG2963 16 AVRLVLEGGASVAEVARELGISPSTLYRWVRQYREGGLGGFPGDGRTTPEQAE---------IRRLRKelRRLEMEN 83
|
|
| HTH_23 |
pfam13384 |
Homeodomain-like domain; |
4-42 |
8.08e-04 |
|
Homeodomain-like domain;
Pssm-ID: 433164 [Multi-domain] Cd Length: 50 Bit Score: 36.86 E-value: 8.08e-04
10 20 30
....*....|....*....|....*....|....*....
gi 1141802939 4 QLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLA 42
Cdd:pfam13384 12 LLLAEGLSVKEIAELLGVSRRTVYRWLKRYNEEGLEGLL 50
|
|
| COG4189 |
COG4189 |
Predicted transcriptional regulator, ArsR family [Transcription]; |
53-96 |
1.37e-03 |
|
Predicted transcriptional regulator, ArsR family [Transcription];
Pssm-ID: 443343 [Multi-domain] Cd Length: 97 Bit Score: 37.25 E-value: 1.37e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1141802939 53 RAIAPAKALAIVE-LRRKRLTQARIAQALGVSASTVS---RVLARAGL 96
Cdd:COG4189 14 KALASETRLRILRlLAEEPLNVNELAEALGLPKSTVSyhiRKLEEAGL 61
|
|
| FliA |
COG1191 |
DNA-directed RNA polymerase specialized sigma subunit [Transcription]; DNA-directed RNA ... |
63-94 |
1.40e-03 |
|
DNA-directed RNA polymerase specialized sigma subunit [Transcription]; DNA-directed RNA polymerase specialized sigma subunit is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 440804 [Multi-domain] Cd Length: 236 Bit Score: 39.42 E-value: 1.40e-03
10 20 30
....*....|....*....|....*....|...
gi 1141802939 63 IVELRR-KRLTQARIAQALGVSASTVSRVLARA 94
Cdd:COG1191 194 VLSLYYfEELTLKEIAEVLGVSESRVSRLHKKA 226
|
|
| PurR |
COG1609 |
DNA-binding transcriptional regulator, LacI/PurR family [Transcription]; |
68-91 |
1.43e-03 |
|
DNA-binding transcriptional regulator, LacI/PurR family [Transcription];
Pssm-ID: 441217 [Multi-domain] Cd Length: 335 Bit Score: 39.80 E-value: 1.43e-03
|
| AF0184 |
COG2522 |
Predicted transcriptional regulator, contains XRE-type HTH domain [Transcription]; |
57-93 |
1.60e-03 |
|
Predicted transcriptional regulator, contains XRE-type HTH domain [Transcription];
Pssm-ID: 442012 [Multi-domain] Cd Length: 99 Bit Score: 37.11 E-value: 1.60e-03
10 20 30
....*....|....*....|....*....|....*...
gi 1141802939 57 PA-KALAIVELRRKRLTQARIAQALGVSASTVSRVLAR 93
Cdd:COG2522 14 PAiRALLAKELVERGLSQSEIAKLLGITQAAVSQYLSG 51
|
|
| HTH_23 |
pfam13384 |
Homeodomain-like domain; |
61-93 |
1.78e-03 |
|
Homeodomain-like domain;
Pssm-ID: 433164 [Multi-domain] Cd Length: 50 Bit Score: 35.71 E-value: 1.78e-03
10 20 30
....*....|....*....|....*....|...
gi 1141802939 61 LAIVELRRKRLTQARIAQALGVSASTVSRVLAR 93
Cdd:pfam13384 8 ARALLLLAEGLSVKEIAELLGVSRRTVYRWLKR 40
|
|
| HTH_ARSR |
cd00090 |
Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric ... |
53-96 |
1.87e-03 |
|
Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Pssm-ID: 238042 [Multi-domain] Cd Length: 78 Bit Score: 36.51 E-value: 1.87e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1141802939 53 RAIAPAKALAIVE-LRRKRLTQARIAQALGVSASTVS---RVLARAGL 96
Cdd:cd00090 2 KALSDPTRLRILRlLLEGPLTVSELAERLGLSQSTVSrhlKKLEEAGL 49
|
|
| HTH_38 |
pfam13936 |
Helix-turn-helix domain; This helix-turn-helix domain is often found in transferases and is ... |
51-93 |
2.37e-03 |
|
Helix-turn-helix domain; This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.
Pssm-ID: 433591 [Multi-domain] Cd Length: 44 Bit Score: 35.18 E-value: 2.37e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1141802939 51 SPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLAR 93
Cdd:pfam13936 1 KGKHLSLEEREEIARLLAEGLSLREIARRLGRSPSTISRELRR 43
|
|
| HTH_Hin_like |
cd00569 |
Helix-turn-helix domain of Hin and related proteins; This domain model summarizes a family of ... |
52-91 |
3.03e-03 |
|
Helix-turn-helix domain of Hin and related proteins; This domain model summarizes a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a C-terminal DNA-binding domain (HTH_Hin) and a catalytic domain.
Pssm-ID: 259851 [Multi-domain] Cd Length: 42 Bit Score: 34.99 E-value: 3.03e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 1141802939 52 PRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVL 91
Cdd:cd00569 3 PPKLTPEQIAEARRLLAAGESVAEIARELGVSRSTLYRYL 42
|
|
| HipB |
COG1396 |
Transcriptional regulator, contains XRE-family HTH domain [Transcription]; |
63-90 |
3.50e-03 |
|
Transcriptional regulator, contains XRE-family HTH domain [Transcription];
Pssm-ID: 441006 [Multi-domain] Cd Length: 83 Bit Score: 35.74 E-value: 3.50e-03
10 20
....*....|....*....|....*....
gi 1141802939 63 IVELRRKR-LTQARIAQALGVSASTVSRV 90
Cdd:COG1396 12 LRELRKARgLTQEELAERLGVSRSTISRI 40
|
|
| VapI |
COG3093 |
Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain [Defense ... |
53-97 |
4.30e-03 |
|
Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain [Defense mechanisms];
Pssm-ID: 442327 [Multi-domain] Cd Length: 87 Bit Score: 35.56 E-value: 4.30e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1141802939 53 RAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLA-RAGLS 97
Cdd:COG3093 5 NPIHPGEILREEFLEPLGLSQTELAKALGVSRQRISEILNgKRAIT 50
|
|
| Sigma70_r4 |
cd06171 |
Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in ... |
57-94 |
5.12e-03 |
|
Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplasmic stress and pathogenesis. Ec sigmaE SR4 also contacts the -35 element, but recognizes a different consensus (a 7-base-pair GGAACTT). Plant SFs recognize sigma70 type promoters and direct transcription of the major plastid RNA polymerase, plastid-encoded RNA polymerase (PEP).
Pssm-ID: 100119 [Multi-domain] Cd Length: 55 Bit Score: 34.39 E-value: 5.12e-03
10 20 30
....*....|....*....|....*....|....*....
gi 1141802939 57 PAKALAIVELRRKR-LTQARIAQALGVSASTVSRVLARA 94
Cdd:cd06171 12 PEREREVILLRFGEgLSYEEIAEILGISRSTVRQRLHRA 50
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|
| YiaG |
COG2944 |
DNA-binding transcriptional regulator YiaG, XRE-type HTH domain [Transcription]; |
63-89 |
5.91e-03 |
|
DNA-binding transcriptional regulator YiaG, XRE-type HTH domain [Transcription];
Pssm-ID: 442187 [Multi-domain] Cd Length: 64 Bit Score: 34.52 E-value: 5.91e-03
10 20
....*....|....*....|....*...
gi 1141802939 63 IVELRRK-RLTQARIAQALGVSASTVSR 89
Cdd:COG2944 11 IRALRERlGLSQAEFAALLGVSVSTVRR 38
|
|
| SfsB |
COG3423 |
Predicted transcriptional regulator, lambda repressor-like DNA-binding domain [Transcription]; |
63-93 |
6.24e-03 |
|
Predicted transcriptional regulator, lambda repressor-like DNA-binding domain [Transcription];
Pssm-ID: 442649 [Multi-domain] Cd Length: 69 Bit Score: 34.81 E-value: 6.24e-03
10 20 30
....*....|....*....|....*....|.
gi 1141802939 63 IVELRRKRLTQARIAQALGVSASTVSRVLAR 93
Cdd:COG3423 13 KAALRKRGTSLAALAREAGLSSSTLSNALTR 43
|
|
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