|
Name |
Accession |
Description |
Interval |
E-value |
| transpos_IS481 |
NF033577 |
IS481 family transposase; null |
1-288 |
8.22e-115 |
|
IS481 family transposase; null
Pssm-ID: 468094 [Multi-domain] Cd Length: 283 Bit Score: 332.25 E-value: 8.22e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 1 MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRK-RLTQACIAQA 79
Cdd:NF033577 5 LVRLVLEDGWSVREAARRFGISRKTVYKWLKRYRAGGEEGLIDRSRRPHRSPRRTSPETEARILALRRElRLGPRRIAYE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 80 L-----GVSASTVSRVLARAGLSHLADLEPAEP-VVRYEHQAPGDLLHIDIKKLGRIQrpghrvtgnrrdtveGAGWDFV 153
Cdd:NF033577 85 LerqgpGVSRSTVHRILRRHGLSRLRALDRKTGkVKRYERAHPGELWHIDIKKLGRIP---------------DVGRLYL 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 154 FVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAyyqRLGVTIQRLLTDNGSAFRSRA--FAALCHELGIKHRFTRPYRPQ 231
Cdd:NF033577 150 HTAIDDHSRFAYAELYPDETAETAADFLRRAFA---EHGIPIRRVLTDNGSEFRSRAhgFELALAELGIEHRRTRPYHPQ 226
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1142027964 232 TNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRL 288
Cdd:NF033577 227 TNGKVERFHRTLKDEFAYARPYESLAELQAALDEWLHHYNHHRPHSALGGKTPAERF 283
|
|
| Tra5 |
COG2801 |
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]; |
70-285 |
4.98e-30 |
|
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442053 [Multi-domain] Cd Length: 309 Bit Score: 115.25 E-value: 4.98e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 70 RLTQACIAQALGVSASTVSRVLARAGL-----------SHLADLEPAEPVVRYEHQAPGDLLHIDIKKLgriqrpghRVT 138
Cdd:COG2801 91 RITAELRREGIAVNRKRVRRLMRELGLqarrrrkkkytTYSGHGGPIAPNLLFTATAPNQVWVTDITYI--------PTA 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 139 GnrrdtvegaGWDFVFVAIDDHAR--VAFtDIHPDERFPSAVQFLKDAVAYYQRLGVTIqrLLTDNGSAFRSRAFAALCH 216
Cdd:COG2801 163 E---------GWLYLAAVIDLFSReiVGW-SVSDSMDAELVVDALEMAIERRGPPKPLI--LHSDNGSQYTSKAYQELLK 230
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1142027964 217 ELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPI 285
Cdd:COG2801 231 KLGITQSMSRPGNPQDNAFIESFFGTLKYELLYRRRFESLEEAREAIEEYIEFYNHERPHSSLGYLTPA 299
|
|
| transpos_IS3 |
NF033516 |
IS3 family transposase; |
2-280 |
1.80e-27 |
|
IS3 family transposase;
Pssm-ID: 468052 [Multi-domain] Cd Length: 369 Bit Score: 109.58 E-value: 1.80e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 2 VQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSP-------------------------RAIA 56
Cdd:NF033516 7 VREVLEGGKSVAEVARELGISPSTLYRWRKKYRGGGEAADAGRLKELLTPEeeenrrlkrelaelrleneilkkarKLLR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 57 PAKALAIVELRRKRLTQACIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPG---------DLL-----HI 122
Cdd:NF033516 87 PAVKYALIDALRGEYSVRRACRVLGVSRSTYYYWRKRPPSRRAPDDAELRARIREIFEESRgrygyrritALLrregiRV 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 123 DIKKLGRI---------QRPGHRVTGNRRDTVE-----------------------------GAGWDFVFVAIDDHAR-- 162
Cdd:NF033516 167 NHKRVYRLmrelgllarRRRKRRPYTTDSGHVHpvapnllnrqftatrpnqvwvtdityirtAEGWLYLAVVLDLFSRei 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 163 VAftdIHPDERFPS--AVQFLKDAVAYYQRLGVTIqrLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFI 240
Cdd:NF033516 247 VG---WSVSTSMSAelVLDALEMAIEWRGKPEGLI--LHSDNGSQYTSKAYREWLKEHGITQSMSRPGNCWDNAVAESFF 321
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1142027964 241 QSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIG 280
Cdd:NF033516 322 GTLKRECLYRRRFRTLEEARQAIEEYIEFYNHERPHSSLG 361
|
|
| rve_3 |
pfam13683 |
Integrase core domain; |
218-284 |
3.83e-19 |
|
Integrase core domain;
Pssm-ID: 433402 [Multi-domain] Cd Length: 67 Bit Score: 79.57 E-value: 3.83e-19
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1142027964 218 LGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVP 284
Cdd:pfam13683 1 LGIEISYIAPGKPMQNGLVESFNGTLRDECLNEHLFSSLAEARALLAAWREDYNTERPHSSLGYRTP 67
|
|
| transpos_IS21 |
NF033546 |
IS21 family transposase; |
14-288 |
1.12e-15 |
|
IS21 family transposase;
Pssm-ID: 468077 [Multi-domain] Cd Length: 296 Bit Score: 75.71 E-value: 1.12e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 14 EAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQACIAQAL-----GVSASTVS 88
Cdd:NF033546 13 EIARELGISRNTVRKYLRRAGLDEPPKYERRPPRPSKLDPFEPYIPDWLEAHLRKPGVTATLLWEELraegyPGSYSTVR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 89 RVLARaglsHLADLEPAEPVVRYEHqAPGDLLHIDIKKLGRIqrpghrVTGNRRDTVEgagwdfVFVAIDDHARVAFTDI 168
Cdd:NF033546 93 RYVRR----WRAEQGPAKVFVRLEH-APGEQAQVDFGEATVV------VTGGTGKILH------VFVAVLGYSRYTYVEA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 169 HPDERFPSAVQFLKDAVAYyqrLGVTIQRLLTDN-GSAFR----------SRAFAALCHELGIKHRFTRPYRPQTNGKAE 237
Cdd:NF033546 156 TPSESQEDLLDGHQRAFEF---FGGVPREIVYDNlKTAVDkrdryeeprlNPRFAAFAAHYGFEPRPCRPYRPQEKGKVE 232
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1142027964 238 RFIQSaLREW---AYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRaVPISRL 288
Cdd:NF033546 233 RAVGY-VRRWflrLRGRRFESLAELNAALAEWLAELANQRPHGTTGG-SPAERF 284
|
|
| transpos_IS630 |
NF033545 |
IS630 family transposase; |
14-268 |
3.65e-12 |
|
IS630 family transposase;
Pssm-ID: 468076 [Multi-domain] Cd Length: 298 Bit Score: 65.35 E-value: 3.65e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 14 EAARAYGVTAPTVRKWLGRFLAQGQAGLADAsSRPTVSPRAIAPAKALAIVELRRKRLTQAC------IAQAL------G 81
Cdd:NF033545 17 EIAERLGVSRSTVYRWLKRFNEGGLEGLLDK-PRPGRPRKLLSEQQAELLALLLEEPPEGAGhwtlreLAALLeeefgvE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 82 VSASTVSRVLARAGLS--------HLADLEPAEPV--VRYEHQAPGD---LLHID------IKKLGRI-----QRPGHRV 137
Cdd:NF033545 96 YSRSTVRRLLKRLGLSpkkprpraPKQDPEFVEKFkeVLGLYRAPPDpaeVVFIDesgiqlLDTRGRGwapkgQRRPRVH 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 138 TGNRRDTVEgagwdfVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTiqrLLTDNGSAFRSRAFAALCHE 217
Cdd:NF033545 176 VYGRRGTLN------LFGALDPLTGKVFVLFTGRINSEDFIEFLEELLAAYPGKKIH---LILDNASTHKSKKVREWLEE 246
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1142027964 218 LG-IKHRFTRPYRPQTNgKAERFIQSALREWAYAHTYQNSQHRADAMKSWLH 268
Cdd:NF033545 247 HGrIELHYLPPYSPWLN-PIERVWAVLKRRLLRNRAFRSVDELREAIDAFLN 297
|
|
| PHA02517 |
PHA02517 |
putative transposase OrfB; Reviewed |
82-284 |
6.31e-11 |
|
putative transposase OrfB; Reviewed
Pssm-ID: 222853 [Multi-domain] Cd Length: 277 Bit Score: 61.80 E-value: 6.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 82 VSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKklgrIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHA 161
Cdd:PHA02517 62 VARCTVGRLMKELGLAGVLRGKKVRTTISRKAVAAPDRVNRQFV----ATRPNQLWVADFTYVSTWQGWVYVAFIIDVFA 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 162 R------VAFTdihPDERFpsAVQFLKDAVAYYQRLGVTIQRllTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGK 235
Cdd:PHA02517 138 RrivgwrVSSS---MDTDF--VLDALEQALWARGRPGGLIHH--SDKGSQYVSLAYTQRLKEAGIRASTGSRGDSYDNAP 210
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1142027964 236 AERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVP 284
Cdd:PHA02517 211 AESINGLYKAEVIHRVSWKNREEVELATLEWVAWYNNRRLHERLGYTPP 259
|
|
| transpos_ISNCY_2 |
NF033594 |
ISNCY family transposase; The ISNCY insertion sequence family, as defined by ISFinder, encodes ... |
2-238 |
7.40e-09 |
|
ISNCY family transposase; The ISNCY insertion sequence family, as defined by ISFinder, encodes several apparently unrelated families of transposases. Members of this family resemble the transposases of ISNCY family elements such as IS1202, ISTde1, ISKpn21, and ISCARN1.
Pssm-ID: 468103 [Multi-domain] Cd Length: 367 Bit Score: 55.95 E-value: 7.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 2 VQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADAS-SRPtvSPRAIAPAKALAIVELRRKR-----LTQAC 75
Cdd:NF033594 3 IQKVVDGRLTVKEAAELLGLSERQVRRLLKRYREEGAAGLVHGNrGRP--PNNRLPDELRERVLALYRERyydfgPTLAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 76 IAQA----LGVSASTVSRVLARAGLshladLEPAE---PVV---RYEHQAPGDLLHIDikklgriqrpghrvtGNRRDTV 145
Cdd:NF033594 81 EKLRerhgISLSRETVRRWMIEAGL-----WSPRKqrrPKVhqpRERRACFGELIQID---------------GSPHDWF 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 146 EGAGWDF-VFVAIDDharvAFTDIHpDERFPSAvqflKDAVAYYQRLGVTIQR------LLTDNGSAFRSRA-------- 210
Cdd:NF033594 141 EGRGPKCtLLVAIDD----ATGRLM-GLRFVES----ESTFGYFEVTRQYLEKhgkpvaFYSDKHSVFRVNEeelagkgd 211
|
250 260 270
....*....|....*....|....*....|..
gi 1142027964 211 ----FAALCHELGIKHRFTrpYRPQTNGKAER 238
Cdd:NF033594 212 gltqFGRALKELGIEIICA--NSPQAKGRVER 241
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| transpos_IS481 |
NF033577 |
IS481 family transposase; null |
1-288 |
8.22e-115 |
|
IS481 family transposase; null
Pssm-ID: 468094 [Multi-domain] Cd Length: 283 Bit Score: 332.25 E-value: 8.22e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 1 MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRK-RLTQACIAQA 79
Cdd:NF033577 5 LVRLVLEDGWSVREAARRFGISRKTVYKWLKRYRAGGEEGLIDRSRRPHRSPRRTSPETEARILALRRElRLGPRRIAYE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 80 L-----GVSASTVSRVLARAGLSHLADLEPAEP-VVRYEHQAPGDLLHIDIKKLGRIQrpghrvtgnrrdtveGAGWDFV 153
Cdd:NF033577 85 LerqgpGVSRSTVHRILRRHGLSRLRALDRKTGkVKRYERAHPGELWHIDIKKLGRIP---------------DVGRLYL 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 154 FVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAyyqRLGVTIQRLLTDNGSAFRSRA--FAALCHELGIKHRFTRPYRPQ 231
Cdd:NF033577 150 HTAIDDHSRFAYAELYPDETAETAADFLRRAFA---EHGIPIRRVLTDNGSEFRSRAhgFELALAELGIEHRRTRPYHPQ 226
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1142027964 232 TNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRL 288
Cdd:NF033577 227 TNGKVERFHRTLKDEFAYARPYESLAELQAALDEWLHHYNHHRPHSALGGKTPAERF 283
|
|
| Tra5 |
COG2801 |
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]; |
70-285 |
4.98e-30 |
|
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442053 [Multi-domain] Cd Length: 309 Bit Score: 115.25 E-value: 4.98e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 70 RLTQACIAQALGVSASTVSRVLARAGL-----------SHLADLEPAEPVVRYEHQAPGDLLHIDIKKLgriqrpghRVT 138
Cdd:COG2801 91 RITAELRREGIAVNRKRVRRLMRELGLqarrrrkkkytTYSGHGGPIAPNLLFTATAPNQVWVTDITYI--------PTA 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 139 GnrrdtvegaGWDFVFVAIDDHAR--VAFtDIHPDERFPSAVQFLKDAVAYYQRLGVTIqrLLTDNGSAFRSRAFAALCH 216
Cdd:COG2801 163 E---------GWLYLAAVIDLFSReiVGW-SVSDSMDAELVVDALEMAIERRGPPKPLI--LHSDNGSQYTSKAYQELLK 230
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1142027964 217 ELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPI 285
Cdd:COG2801 231 KLGITQSMSRPGNPQDNAFIESFFGTLKYELLYRRRFESLEEAREAIEEYIEFYNHERPHSSLGYLTPA 299
|
|
| transpos_IS3 |
NF033516 |
IS3 family transposase; |
2-280 |
1.80e-27 |
|
IS3 family transposase;
Pssm-ID: 468052 [Multi-domain] Cd Length: 369 Bit Score: 109.58 E-value: 1.80e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 2 VQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSP-------------------------RAIA 56
Cdd:NF033516 7 VREVLEGGKSVAEVARELGISPSTLYRWRKKYRGGGEAADAGRLKELLTPEeeenrrlkrelaelrleneilkkarKLLR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 57 PAKALAIVELRRKRLTQACIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPG---------DLL-----HI 122
Cdd:NF033516 87 PAVKYALIDALRGEYSVRRACRVLGVSRSTYYYWRKRPPSRRAPDDAELRARIREIFEESRgrygyrritALLrregiRV 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 123 DIKKLGRI---------QRPGHRVTGNRRDTVE-----------------------------GAGWDFVFVAIDDHAR-- 162
Cdd:NF033516 167 NHKRVYRLmrelgllarRRRKRRPYTTDSGHVHpvapnllnrqftatrpnqvwvtdityirtAEGWLYLAVVLDLFSRei 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 163 VAftdIHPDERFPS--AVQFLKDAVAYYQRLGVTIqrLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFI 240
Cdd:NF033516 247 VG---WSVSTSMSAelVLDALEMAIEWRGKPEGLI--LHSDNGSQYTSKAYREWLKEHGITQSMSRPGNCWDNAVAESFF 321
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1142027964 241 QSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIG 280
Cdd:NF033516 322 GTLKRECLYRRRFRTLEEARQAIEEYIEFYNHERPHSSLG 361
|
|
| rve_3 |
pfam13683 |
Integrase core domain; |
218-284 |
3.83e-19 |
|
Integrase core domain;
Pssm-ID: 433402 [Multi-domain] Cd Length: 67 Bit Score: 79.57 E-value: 3.83e-19
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1142027964 218 LGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVP 284
Cdd:pfam13683 1 LGIEISYIAPGKPMQNGLVESFNGTLRDECLNEHLFSSLAEARALLAAWREDYNTERPHSSLGYRTP 67
|
|
| Tra8 |
COG2826 |
Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons]; |
1-277 |
4.62e-18 |
|
Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];
Pssm-ID: 442074 [Multi-domain] Cd Length: 325 Bit Score: 82.62 E-value: 4.62e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 1 MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGR---------FLAQGQAglADASSRPTVSPRAIAPAKALAIVELR-RKR 70
Cdd:COG2826 14 EIEALLKAGLSVREIARRLGRSPSTISRELKRnsgrrgyraEGAQRLA--EDRRRRPKRKRKLATTPELRAYVEEKlRKK 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 71 LTQACIAQAL--------GVSASTVSRVLARAGLSH-LADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPgHRVTGNR 141
Cdd:COG2826 92 WSPEQIAGRLkreddpgmRVSHETIYRYIYAGGLRKdLYRPLRRKRKRRRPRGRTRKRRGKIPDRRSISERP-AEVEDRA 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 142 R------DTVEGA-GWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLgvTIQRLLTDNGSAFRsrAFAAL 214
Cdd:COG2826 171 EpghwegDLIIGKrGKSALLTLVERKSRFVILLKLPDKTAESVADALIRLLRKLPAF--LRKSITTDNGKEFA--DHKEI 246
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1142027964 215 CHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYqnSQHRADAMKSWLHHYNwHRPHQ 277
Cdd:COG2826 247 EAALGIKVYFADPYSPWQRGTNENTNGLLRQYFPKGTDF--STVTQEELDAIADRLN-NRPRK 306
|
|
| rve |
pfam00665 |
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into ... |
116-230 |
1.41e-16 |
|
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.
Pssm-ID: 459897 [Multi-domain] Cd Length: 98 Bit Score: 73.50 E-value: 1.41e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 116 PGDLLHIDIKKLGRIQrpghrvtgnrrdtveGAGWDFVFVAIDDHARVAFTDIHPDE-RFPSAVQFLKDAVAYYqrlGVT 194
Cdd:pfam00665 1 PNQLWQGDFTYIRIPG---------------GGGKLYLLVIVDDFSREILAWALSSEmDAELVLDALERAIAFR---GGV 62
|
90 100 110
....*....|....*....|....*....|....*.
gi 1142027964 195 IQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRP 230
Cdd:pfam00665 63 PLIIHSDNGSEYTSKAFREFLKDLGIKPSFSRPGNP 98
|
|
| transpos_IS21 |
NF033546 |
IS21 family transposase; |
14-288 |
1.12e-15 |
|
IS21 family transposase;
Pssm-ID: 468077 [Multi-domain] Cd Length: 296 Bit Score: 75.71 E-value: 1.12e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 14 EAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQACIAQAL-----GVSASTVS 88
Cdd:NF033546 13 EIARELGISRNTVRKYLRRAGLDEPPKYERRPPRPSKLDPFEPYIPDWLEAHLRKPGVTATLLWEELraegyPGSYSTVR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 89 RVLARaglsHLADLEPAEPVVRYEHqAPGDLLHIDIKKLGRIqrpghrVTGNRRDTVEgagwdfVFVAIDDHARVAFTDI 168
Cdd:NF033546 93 RYVRR----WRAEQGPAKVFVRLEH-APGEQAQVDFGEATVV------VTGGTGKILH------VFVAVLGYSRYTYVEA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 169 HPDERFPSAVQFLKDAVAYyqrLGVTIQRLLTDN-GSAFR----------SRAFAALCHELGIKHRFTRPYRPQTNGKAE 237
Cdd:NF033546 156 TPSESQEDLLDGHQRAFEF---FGGVPREIVYDNlKTAVDkrdryeeprlNPRFAAFAAHYGFEPRPCRPYRPQEKGKVE 232
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1142027964 238 RFIQSaLREW---AYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRaVPISRL 288
Cdd:NF033546 233 RAVGY-VRRWflrLRGRRFESLAELNAALAEWLAELANQRPHGTTGG-SPAERF 284
|
|
| transpos_IS630 |
NF033545 |
IS630 family transposase; |
14-268 |
3.65e-12 |
|
IS630 family transposase;
Pssm-ID: 468076 [Multi-domain] Cd Length: 298 Bit Score: 65.35 E-value: 3.65e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 14 EAARAYGVTAPTVRKWLGRFLAQGQAGLADAsSRPTVSPRAIAPAKALAIVELRRKRLTQAC------IAQAL------G 81
Cdd:NF033545 17 EIAERLGVSRSTVYRWLKRFNEGGLEGLLDK-PRPGRPRKLLSEQQAELLALLLEEPPEGAGhwtlreLAALLeeefgvE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 82 VSASTVSRVLARAGLS--------HLADLEPAEPV--VRYEHQAPGD---LLHID------IKKLGRI-----QRPGHRV 137
Cdd:NF033545 96 YSRSTVRRLLKRLGLSpkkprpraPKQDPEFVEKFkeVLGLYRAPPDpaeVVFIDesgiqlLDTRGRGwapkgQRRPRVH 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 138 TGNRRDTVEgagwdfVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTiqrLLTDNGSAFRSRAFAALCHE 217
Cdd:NF033545 176 VYGRRGTLN------LFGALDPLTGKVFVLFTGRINSEDFIEFLEELLAAYPGKKIH---LILDNASTHKSKKVREWLEE 246
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1142027964 218 LG-IKHRFTRPYRPQTNgKAERFIQSALREWAYAHTYQNSQHRADAMKSWLH 268
Cdd:NF033545 247 HGrIELHYLPPYSPWLN-PIERVWAVLKRRLLRNRAFRSVDELREAIDAFLN 297
|
|
| Csa3 |
COG3415 |
CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; CRISPR-associated protein ... |
4-277 |
1.67e-11 |
|
CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; CRISPR-associated protein Csa3, CARF domain is part of the Pathway/BioSystem: CRISPR-Cas system
Pssm-ID: 442641 [Multi-domain] Cd Length: 325 Bit Score: 63.72 E-value: 1.67e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 4 QLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPtvSPRAIAPAKALAIVELRRK-------RLTQACI 76
Cdd:COG3415 33 LLLAEGLSVREIAERLGVSRSTVYRWLKRYREGGLAGLKDRPRGG--RPSKLSDEQRERLLELLREkspdqgsRWTLAEL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 77 AQALG------VSASTVSRVLARAGLSHLAD---LEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG 147
Cdd:COG3415 111 AELLEeefgveVSPSTVRRLLKRLGLSYKKPrprAPKQDPEAVEKFKKELEALLAKPAKAEVAGVDEGDEIGALRRAAGG 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 148 AGWDFVFVAIDDHARVaftdihpdeRFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRP 227
Cdd:COG3415 191 RLLAPGGRVRRTGASV---------RRGRALLFLALGLALGLRIGLTIDALLAGALLLFLRLLAERALALLLLLLLLLLL 261
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1142027964 228 YRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQ 277
Cdd:COG3415 262 SPSKAVARAAKLLKLELLRLLFLPPSASLLLALEALLRELRERNLLRLAH 311
|
|
| PHA02517 |
PHA02517 |
putative transposase OrfB; Reviewed |
82-284 |
6.31e-11 |
|
putative transposase OrfB; Reviewed
Pssm-ID: 222853 [Multi-domain] Cd Length: 277 Bit Score: 61.80 E-value: 6.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 82 VSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKklgrIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHA 161
Cdd:PHA02517 62 VARCTVGRLMKELGLAGVLRGKKVRTTISRKAVAAPDRVNRQFV----ATRPNQLWVADFTYVSTWQGWVYVAFIIDVFA 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 162 R------VAFTdihPDERFpsAVQFLKDAVAYYQRLGVTIQRllTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGK 235
Cdd:PHA02517 138 RrivgwrVSSS---MDTDF--VLDALEQALWARGRPGGLIHH--SDKGSQYVSLAYTQRLKEAGIRASTGSRGDSYDNAP 210
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1142027964 236 AERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVP 284
Cdd:PHA02517 211 AESINGLYKAEVIHRVSWKNREEVELATLEWVAWYNNRRLHERLGYTPP 259
|
|
| LZ_Tnp_IS481 |
pfam13011 |
leucine-zipper of insertion element IS481; This is the upstream region of the conjoined ORF AB ... |
1-69 |
4.55e-09 |
|
leucine-zipper of insertion element IS481; This is the upstream region of the conjoined ORF AB of insertion element 481. The significance of IS481 in the detection of Bordetella pertussis is discussed in. The B portion of the ORF AB carries the transposase activity in family rve, pfam00665.
Pssm-ID: 289759 [Multi-domain] Cd Length: 85 Bit Score: 52.74 E-value: 4.55e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1142027964 1 MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRK 69
Cdd:pfam13011 17 LVNRVMEDNRPMAHAAQAAGVSLQCAHKWLARFRAEGLDGLLDRSSRPHRSPKACAPEQEEAFAEARAQ 85
|
|
| transpos_ISNCY_2 |
NF033594 |
ISNCY family transposase; The ISNCY insertion sequence family, as defined by ISFinder, encodes ... |
2-238 |
7.40e-09 |
|
ISNCY family transposase; The ISNCY insertion sequence family, as defined by ISFinder, encodes several apparently unrelated families of transposases. Members of this family resemble the transposases of ISNCY family elements such as IS1202, ISTde1, ISKpn21, and ISCARN1.
Pssm-ID: 468103 [Multi-domain] Cd Length: 367 Bit Score: 55.95 E-value: 7.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 2 VQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADAS-SRPtvSPRAIAPAKALAIVELRRKR-----LTQAC 75
Cdd:NF033594 3 IQKVVDGRLTVKEAAELLGLSERQVRRLLKRYREEGAAGLVHGNrGRP--PNNRLPDELRERVLALYRERyydfgPTLAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 76 IAQA----LGVSASTVSRVLARAGLshladLEPAE---PVV---RYEHQAPGDLLHIDikklgriqrpghrvtGNRRDTV 145
Cdd:NF033594 81 EKLRerhgISLSRETVRRWMIEAGL-----WSPRKqrrPKVhqpRERRACFGELIQID---------------GSPHDWF 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 146 EGAGWDF-VFVAIDDharvAFTDIHpDERFPSAvqflKDAVAYYQRLGVTIQR------LLTDNGSAFRSRA-------- 210
Cdd:NF033594 141 EGRGPKCtLLVAIDD----ATGRLM-GLRFVES----ESTFGYFEVTRQYLEKhgkpvaFYSDKHSVFRVNEeelagkgd 211
|
250 260 270
....*....|....*....|....*....|..
gi 1142027964 211 ----FAALCHELGIKHRFTrpYRPQTNGKAER 238
Cdd:NF033594 212 gltqFGRALKELGIEIICA--NSPQAKGRVER 241
|
|
| HTH_32 |
pfam13565 |
Homeodomain-like domain; |
25-91 |
6.47e-07 |
|
Homeodomain-like domain;
Pssm-ID: 463923 [Multi-domain] Cd Length: 73 Bit Score: 46.14 E-value: 6.47e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1142027964 25 TVRKWLGRFLAQGQAGLADASSRPtvSPRAIAPAKALAIVELRRK--RLTQACIAQAL------GVSASTVSRVL 91
Cdd:pfam13565 1 TVYRWRKRYNEEGLEGLEDRPRRG--RPRKLTDEQEARLLALLCEepRWSPRLLAERLeeefgvKVSRSTVRRIL 73
|
|
| PRK09409 |
PRK09409 |
IS2 transposase TnpB; Reviewed |
199-284 |
7.03e-06 |
|
IS2 transposase TnpB; Reviewed
Pssm-ID: 181829 [Multi-domain] Cd Length: 301 Bit Score: 46.63 E-value: 7.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 199 LTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYN-WHrPHQ 277
Cdd:PRK09409 196 LTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNeWH-PHS 274
|
....*..
gi 1142027964 278 GIGRAVP 284
Cdd:PRK09409 275 ALGYRSP 281
|
|
| HTH_28 |
pfam13518 |
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is ... |
4-48 |
7.25e-06 |
|
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.
Pssm-ID: 463908 [Multi-domain] Cd Length: 52 Bit Score: 42.58 E-value: 7.25e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 1142027964 4 QLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRP 48
Cdd:pfam13518 7 LLALEGESIKEAARLFGISRSTVYRWIRRYREGGLEGLLPRRRRP 51
|
|
| PRK14702 |
PRK14702 |
insertion element IS2 transposase InsD; Provisional |
199-284 |
8.06e-06 |
|
insertion element IS2 transposase InsD; Provisional
Pssm-ID: 237792 [Multi-domain] Cd Length: 262 Bit Score: 46.26 E-value: 8.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142027964 199 LTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYN-WHrPHQ 277
Cdd:PRK14702 157 LTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNeWH-PHS 235
|
....*..
gi 1142027964 278 GIGRAVP 284
Cdd:PRK14702 236 ALGYRSP 242
|
|
| COG2512 |
COG2512 |
Predicted transcriptional regulator, contains CW (cell wall-binding) repeats and an HTH domain ... |
59-93 |
1.08e-04 |
|
Predicted transcriptional regulator, contains CW (cell wall-binding) repeats and an HTH domain [General function prediction only];
Pssm-ID: 442002 [Multi-domain] Cd Length: 80 Bit Score: 39.90 E-value: 1.08e-04
10 20 30
....*....|....*....|....*....|....*
gi 1142027964 59 KALAIVELRRKRLTQACIAQALGVSASTVSRVLAR 93
Cdd:COG2512 19 RVLELLRENGGRMTQSEIVKETGWSKSKVSRLLSR 53
|
|
| InsE |
COG2963 |
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; |
1-73 |
4.35e-04 |
|
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442203 [Multi-domain] Cd Length: 93 Bit Score: 38.75 E-value: 4.35e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1142027964 1 MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRaiapakalaIVELRR--KRLTQ 73
Cdd:COG2963 16 AVRLVLEGGASVAEVARELGISPSTLYRWVRQYREGGLGGFPGDGRTTPEQAE---------IRRLRKelRRLEM 81
|
|
| HTH_23 |
pfam13384 |
Homeodomain-like domain; |
4-42 |
6.83e-04 |
|
Homeodomain-like domain;
Pssm-ID: 433164 [Multi-domain] Cd Length: 50 Bit Score: 36.86 E-value: 6.83e-04
10 20 30
....*....|....*....|....*....|....*....
gi 1142027964 4 QLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLA 42
Cdd:pfam13384 12 LLLAEGLSVKEIAELLGVSRRTVYRWLKRYNEEGLEGLL 50
|
|
| HTH_38 |
pfam13936 |
Helix-turn-helix domain; This helix-turn-helix domain is often found in transferases and is ... |
51-93 |
3.77e-03 |
|
Helix-turn-helix domain; This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.
Pssm-ID: 433591 [Multi-domain] Cd Length: 44 Bit Score: 34.80 E-value: 3.77e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1142027964 51 SPRAIAPAKALAIVELRRKRLTQACIAQALGVSASTVSRVLAR 93
Cdd:pfam13936 1 KGKHLSLEEREEIARLLAEGLSLREIARRLGRSPSTISRELRR 43
|
|
| HTH_23 |
pfam13384 |
Homeodomain-like domain; |
61-93 |
5.15e-03 |
|
Homeodomain-like domain;
Pssm-ID: 433164 [Multi-domain] Cd Length: 50 Bit Score: 34.55 E-value: 5.15e-03
10 20 30
....*....|....*....|....*....|...
gi 1142027964 61 LAIVELRRKRLTQACIAQALGVSASTVSRVLAR 93
Cdd:pfam13384 8 ARALLLLAEGLSVKEIAELLGVSRRTVYRWLKR 40
|
|
| PurR |
COG1609 |
DNA-binding transcriptional regulator, LacI/PurR family [Transcription]; |
68-91 |
6.60e-03 |
|
DNA-binding transcriptional regulator, LacI/PurR family [Transcription];
Pssm-ID: 441217 [Multi-domain] Cd Length: 335 Bit Score: 37.49 E-value: 6.60e-03
|
| |
