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Conserved domains on  [gi|1160419548|gb|AQZ26175|]
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NADH dehydrogenase subunit 1, partial (mitochondrion) [Tropidomya abbreviata]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009583)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
3-306 5.51e-129

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177201  Cd Length: 307  Bit Score: 369.97  E-value: 5.51e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548   3 FVGLLSFLWSFVFVLVAVAFFTLLERKGLSYFQTRKGPNKVGVMGLLQPIADAVKLFLKELVFPSLSNKMWFLLAPFVSL 82
Cdd:MTH00143    1 LVSLLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548  83 SVALVMWVLTPFINSISYIEYGILLFLCISSLNVYGLMMAGWTSNSKYALLGSMRGVAQTISYEISMSVILLLCFFLMGS 162
Cdd:MTH00143   81 ILALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGS 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548 163 YMFDEFLIERFSFWK--LMPVMMLMFLVSVMAETNRAPFDFAEGESELVSGFNVEYGGGPFALIFLGEYANIMFMGMMVS 240
Cdd:MTH00143  161 FSFIEISESQFSVWLgfLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTV 240
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1160419548 241 IVWCGGFSVFIFSSKVKFVMEILMFSFVFVWARATLPRFRYDLLMSLTWKSFLPLSLVFLMVVMMM 306
Cdd:MTH00143  241 VLFFGGSSVLFLLGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILVLFVVL 306
 
Name Accession Description Interval E-value
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
3-306 5.51e-129

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 369.97  E-value: 5.51e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548   3 FVGLLSFLWSFVFVLVAVAFFTLLERKGLSYFQTRKGPNKVGVMGLLQPIADAVKLFLKELVFPSLSNKMWFLLAPFVSL 82
Cdd:MTH00143    1 LVSLLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548  83 SVALVMWVLTPFINSISYIEYGILLFLCISSLNVYGLMMAGWTSNSKYALLGSMRGVAQTISYEISMSVILLLCFFLMGS 162
Cdd:MTH00143   81 ILALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGS 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548 163 YMFDEFLIERFSFWK--LMPVMMLMFLVSVMAETNRAPFDFAEGESELVSGFNVEYGGGPFALIFLGEYANIMFMGMMVS 240
Cdd:MTH00143  161 FSFIEISESQFSVWLgfLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTV 240
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1160419548 241 IVWCGGFSVFIFSSKVKFVMEILMFSFVFVWARATLPRFRYDLLMSLTWKSFLPLSLVFLMVVMMM 306
Cdd:MTH00143  241 VLFFGGSSVLFLLGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILVLFVVL 306
NADHdh pfam00146
NADH dehydrogenase;
13-303 3.02e-94

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 281.28  E-value: 3.02e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548  13 FVFVLVAVAFFTLLERKGLSYFQTRKGPNKVGVMGLLQPIADAVKLFLKELVFPSLSNKMWFLLAPFVSLSVALVMWVLT 92
Cdd:pfam00146   6 LVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVI 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548  93 PF--INSISYIEYGILLFLCISSLNVYGLMMAGWTSNSKYALLGSMRGVAQTISYEISMSVILLLCFFLMGSYMFDEFLI 170
Cdd:pfam00146  86 PFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSEIVE 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548 171 ERFSFWK--LMPVMMLMFLVSVMAETNRAPFDFAEGESELVSGFNVEYGGGPFALIFLGEYANIMFMGMMVSIVWCGGFS 248
Cdd:pfam00146 166 AQAGGWFipLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLGGWL 245
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1160419548 249 V-FIFSSKVKFVMEILMFSFVFVWARATLPRFRYDLLMSLTWKSFLPLSLVFLMVV 303
Cdd:pfam00146 246 GpFPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLLT 301
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
2-311 1.32e-92

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 278.17  E-value: 1.32e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548   2 FFVGLLSFLWSFVFVLVAVAFFTLLERKGLSYFQTRKGPNKVGVMGLLQPIADAVKLFLKELVFPSLSNKMWFLLAPFVS 81
Cdd:COG1005     8 LLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILA 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548  82 LSVALVMWVLTPFINS--ISYIEYGILLFLCISSLNVYGLMMAGWTSNSKYALLGSMRGVAQTISYEISMSVILLLCFFL 159
Cdd:COG1005    88 FIPALLAFAVIPFGPGlvLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLL 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548 160 MGSYMFDEFL---IERFSFWKLMPVMMLMFLVSVMAETNRAPFDFAEGESELVSGFNVEYGGGPFALIFLGEYANIMFMG 236
Cdd:COG1005   168 AGSLNLSEIVeaqAGGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVS 247
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548 237 MMVSIVWCGGFSVFIFSSKVK-------FVMEILMFSFVFVWARATLPRFRYDLLMSLTWKSFLPLSLVFLMVVMMMKLL 309
Cdd:COG1005   248 ALATTLFLGGWLGPFPILPLGglpgilwFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVLTAAVVLL 327

                  ..
gi 1160419548 310 LL 311
Cdd:COG1005   328 FG 329
 
Name Accession Description Interval E-value
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
3-306 5.51e-129

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 369.97  E-value: 5.51e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548   3 FVGLLSFLWSFVFVLVAVAFFTLLERKGLSYFQTRKGPNKVGVMGLLQPIADAVKLFLKELVFPSLSNKMWFLLAPFVSL 82
Cdd:MTH00143    1 LVSLLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548  83 SVALVMWVLTPFINSISYIEYGILLFLCISSLNVYGLMMAGWTSNSKYALLGSMRGVAQTISYEISMSVILLLCFFLMGS 162
Cdd:MTH00143   81 ILALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGS 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548 163 YMFDEFLIERFSFWK--LMPVMMLMFLVSVMAETNRAPFDFAEGESELVSGFNVEYGGGPFALIFLGEYANIMFMGMMVS 240
Cdd:MTH00143  161 FSFIEISESQFSVWLgfLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTV 240
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1160419548 241 IVWCGGFSVFIFSSKVKFVMEILMFSFVFVWARATLPRFRYDLLMSLTWKSFLPLSLVFLMVVMMM 306
Cdd:MTH00143  241 VLFFGGSSVLFLLGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILVLFVVL 306
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
6-308 3.41e-108

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 316.98  E-value: 3.41e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548   6 LLSFLWSFVFVLVAVAFFTLLERKGLSYFQTRKGPNKVGVMGLLQPIADAVKLFLKELVFPSLSNKMWFLLAPFVSLSVA 85
Cdd:MTH00225    4 LLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILS 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548  86 LVMWVLTPFINSISYIEYGILLFLCISSLNVYGLMMAGWTSNSKYALLGSMRGVAQTISYEISMSVILLLCFFLMGSYMF 165
Cdd:MTH00225   84 LILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNL 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548 166 DEFLIERFSFWK--LMPVMMLMFLVSVMAETNRAPFDFAEGESELVSGFNVEYGGGPFALIFLGEYANIMFMGMMVSIVW 243
Cdd:MTH00225  164 FDFSYNQKYFWFmfVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSILF 243
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1160419548 244 CGGFSVFIFsskVKFVMEILMFSFVFVWARATLPRFRYDLLMSLTWKSFLPLSLVFLMVVMMMKL 308
Cdd:MTH00225  244 FGGFFVTID---LFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLIILM 305
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
2-310 3.72e-107

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 314.40  E-value: 3.72e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548   2 FFVGLLSFLWSFVFVLVAVAFFTLLERKGLSYFQTRKGPNKVGVMGLLQPIADAVKLFLKELVFPSLSNKMWFLLAPFVS 81
Cdd:MTH00193    1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548  82 LSVALVMWVLTPFINSISYIEYGILLFLCISSLNVYGLMMAGWTSNSKYALLGSMRGVAQTISYEISMSVILLLCFFLMG 161
Cdd:MTH00193   81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548 162 SYMFDEFLIERFSFWK--LMPVMMLMFLVSVMAETNRAPFDFAEGESELVSGFNVEYGGGPFALIFLGEYANIMFMGMMV 239
Cdd:MTH00193  161 SFNLLDFMNYQKYIWFifFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1160419548 240 SIVWCGGFSVFIFsskvkFVMEILMFSFVFVWARATLPRFRYDLLMSLTWKSFLPLSLVFLMVVMMMKLLL 310
Cdd:MTH00193  241 VLMFLGGDLLSLL-----FYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
16-301 1.19e-105

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 311.17  E-value: 1.19e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548  16 VLVAVAFFTLLERKGLSYFQTRKGPNKVGVMGLLQPIADAVKLFLKELVFPSLSNKMWFLLAPFVSLSVALVMWVLTPFI 95
Cdd:MTH00071   18 VLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMALTLALIIWTPLPMP 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548  96 NSISYIEYGILLFLCISSLNVYGLMMAGWTSNSKYALLGSMRGVAQTISYEISMSVILLLCFFLMGSYMFDEFLIERFSF 175
Cdd:MTH00071   98 NNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGGFSLMNFNTTQEFM 177
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548 176 WKLMPV--MMLMFLVSVMAETNRAPFDFAEGESELVSGFNVEYGGGPFALIFLGEYANIMFMGMMVSIVWCGGFSVFIFS 253
Cdd:MTH00071  178 WLIIPAwpMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLSTILFLGSTYNHLQP 257
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1160419548 254 --SKVKFVMEILMFSFVFVWARATLPRFRYDLLMSLTWKSFLPLSLVFLM 301
Cdd:MTH00071  258 elSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTI 307
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
4-310 9.38e-105

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 308.21  E-value: 9.38e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548   4 VGLLSFLWSFVFVLVAVAFFTLLERKGLSYFQTRKGPNKVGVMGLLQPIADAVKLFLKELVFPSLSNKMWFLLAPFVSLS 83
Cdd:MTH00195    3 ISVIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALA 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548  84 VALVMWVLTPFINSISYIEYGILLFLCISSLNVYGLMMAGWTSNSKYALLGSMRGVAQTISYEISMSVILLLCFFLMGSY 163
Cdd:MTH00195   83 LALILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSF 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548 164 MFDEFLIERFSFWK--LMPVMMLMFLVSVMAETNRAPFDFAEGESELVSGFNVEYGGGPFALIFLGEYANIMFMGMMVSI 241
Cdd:MTH00195  163 DFTIMVISQGFSWVilLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTI 242
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1160419548 242 VWCGGFSVFIFSSKVKFvmeilmFSFVFVWARATLPRFRYDLLMSLTWKSFLPLSLVFLMVVMMMKLLL 310
Cdd:MTH00195  243 LFLGGGGTIIVALKSLF------LSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFAL 305
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
6-306 1.82e-103

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 305.67  E-value: 1.82e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548   6 LLSFLWSFVFVLVAVAFFTLLERKGLSYFQTRKGPNKVGVMGLLQPIADAVKLFLKELVFPSLSNKMWFLLAPFVSLSVA 85
Cdd:MTH00111    8 LINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILALLLA 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548  86 LVMWVLTPFINSISYIEYGILLFLCISSLNVYGLMMAGWTSNSKYALLGSMRGVAQTISYEISMSVILLLCFFLMGSYMF 165
Cdd:MTH00111   88 LTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSGGYTL 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548 166 DEFLIERFSFWKLMPV--MMLMFLVSVMAETNRAPFDFAEGESELVSGFNVEYGGGPFALIFLGEYANIMFMGMMVSIvw 243
Cdd:MTH00111  168 QTLATTQEPLWLIFSSwpLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLTTI-- 245
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1160419548 244 cggfsVFIFSSK---------VKFVMEILMFSFVFVWARATLPRFRYDLLMSLTWKSFLPLSLVFLMVVMMM 306
Cdd:MTH00111  246 -----LFLNPSTlnlppelftINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSM 312
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
14-301 4.35e-103

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 304.61  E-value: 4.35e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548  14 VFVLVAVAFFTLLERKGLSYFQTRKGPNKVGVMGLLQPIADAVKLFLKELVFPSLSNKMWFLLAPFVSLSVALVMWVLTP 93
Cdd:MTH00134   17 VPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALTLALTLWAPMP 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548  94 FINSISYIEYGILLFLCISSLNVYGLMMAGWTSNSKYALLGSMRGVAQTISYEISMSVILLLCFFLMGSYMFDEFLIERF 173
Cdd:MTH00134   97 MPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTLQTFNTAQE 176
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548 174 SFWKLMPVMML--MFLVSVMAETNRAPFDFAEGESELVSGFNVEYGGGPFALIFLGEYANIMFMGMMVSIVWCGGFSVFI 251
Cdd:MTH00134  177 SIWLLLPAWPLaaMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFLGASHIPT 256
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1160419548 252 FS--SKVKFVMEILMFSFVFVWARATLPRFRYDLLMSLTWKSFLPLSLVFLM 301
Cdd:MTH00134  257 LPelTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVI 308
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
2-310 9.74e-103

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 303.37  E-value: 9.74e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548   2 FFVGLLSFLWSFVFVLVAVAFFTLLERKGLSYFQTRKGPNKVGVMGLLQPIADAVKLFLKELVFPSLSNKMWFLLAPFVS 81
Cdd:MTH00218    1 MLLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548  82 LSVALVMWVLTPFINSISYIEYGILLFLCISSLNVYGLMMAGWTSNSKYALLGSMRGVAQTISYEISMSVILLLCFFLMG 161
Cdd:MTH00218   81 LTLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548 162 SYMFDEFLIERFSFWKLMP--VMMLMFLVSVMAETNRAPFDFAEGESELVSGFNVEYGGGPFALIFLGEYANIMFMGMMV 239
Cdd:MTH00218  161 GFSLEGFNLTQETIWLLIPewPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLS 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1160419548 240 SIVWCGGFSVFIFsskvkFVMEILMFSFVFVWARATLPRFRYDLLMSLTWKSFLPLSLVFLMVVMMMKLLL 310
Cdd:MTH00218  241 VILFLGTSLTTIN-----LMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSF 306
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
7-311 5.79e-99

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 293.61  E-value: 5.79e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548   7 LSFLWSFVFVLVAVAFFTLLERKGLSYFQTRKGPNKVGVMGLLQPIADAVKLFLKELVFPSLSNKMWFLLAPFVSLSVAL 86
Cdd:MTH00010    7 ISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILAL 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548  87 VMWVLTPFINSISYIEYGILLFLCISSLNVYGLMMAGWTSNSKYALLGSMRGVAQTISYEISMSVILLLCFFLMGSYMFD 166
Cdd:MTH00010   87 LLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFSFS 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548 167 EFLIERFSFWKLM-PVMMLMFLVSVMAETNRAPFDFAEGESELVSGFNVEYGGGPFALIFLGEYANIMFMGMMVSIVWCg 245
Cdd:MTH00010  167 KIIMSQYSWILLMiIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVFFT- 245
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1160419548 246 GFSVFIFSSKVKFVMEILMFSFVFVWARATLPRFRYDLLMSLTWKSFLPLSLVFLMVVMMMKLLLL 311
Cdd:MTH00010  246 SFIPSIFISDLMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLMISIPIMFLLL 311
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
2-310 6.25e-99

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 293.84  E-value: 6.25e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548   2 FFVGLLSFLwsfVFVLVAVAFFTLLERKGLSYFQTRKGPNKVGVMGLLQPIADAVKLFLKELVFPSLSNKMWFLLAPFVS 81
Cdd:MTH00104    2 FMINILLLI---IPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILA 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548  82 LSVALVMWVLTPFINSISYIEYGILLFLCISSLNVYGLMMAGWTSNSKYALLGSMRGVAQTISYEISMSVILLLCFFLMG 161
Cdd:MTH00104   79 LTLALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNG 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548 162 SYMFDEFLIERFSFWKLMPV--MMLMFLVSVMAETNRAPFDFAEGESELVSGFNVEYGGGPFALIFLGEYANIMFMGMMV 239
Cdd:MTH00104  159 SFTLSTLITTQEHLWLIFPSwpLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALT 238
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1160419548 240 SIVWCGGFSVFIFS--SKVKFVMEILMFSFVFVWARATLPRFRYDLLMSLTWKSFLPLSLVFLMVVMMMKLLL 310
Cdd:MTH00104  239 TILFLGAFHNPYMPelYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMT 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
1-300 6.56e-96

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 286.49  E-value: 6.56e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548   1 VFFVGLLSFLwsfVFVLVAVAFFTLLERKGLSYFQTRKGPNKVGVMGLLQPIADAVKLFLKELVFPSLSNKMWFLLAPFV 80
Cdd:MTH00040    5 LFLINLLSFI---VPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVL 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548  81 SLSVALVMWVLTPFINSISYIEYGILLFLCISSLNVYGLMMAGWTSNSKYALLGSMRGVAQTISYEISMSVILLLCFFLM 160
Cdd:MTH00040   82 FLFLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFS 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548 161 GSYMFDEFLIERFSFWKLMPV--MMLMFLVSVMAETNRAPFDFAEGESELVSGFNVEYGGGPFALIFLGEYANIMFMGMM 238
Cdd:MTH00040  162 GSFSLSSISNSQNGSWLLFPClpLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLL 241
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1160419548 239 VSIVWCGGFSVF--IFSSKVKFV-MEILMFSFVFVWARATLPRFRYDLLMSLTWKSFLPLSLVFL 300
Cdd:MTH00040  242 SVILFLGGGSPFneIFPINIIIVgIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLL 306
NADHdh pfam00146
NADH dehydrogenase;
13-303 3.02e-94

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 281.28  E-value: 3.02e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548  13 FVFVLVAVAFFTLLERKGLSYFQTRKGPNKVGVMGLLQPIADAVKLFLKELVFPSLSNKMWFLLAPFVSLSVALVMWVLT 92
Cdd:pfam00146   6 LVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVI 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548  93 PF--INSISYIEYGILLFLCISSLNVYGLMMAGWTSNSKYALLGSMRGVAQTISYEISMSVILLLCFFLMGSYMFDEFLI 170
Cdd:pfam00146  86 PFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSEIVE 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548 171 ERFSFWK--LMPVMMLMFLVSVMAETNRAPFDFAEGESELVSGFNVEYGGGPFALIFLGEYANIMFMGMMVSIVWCGGFS 248
Cdd:pfam00146 166 AQAGGWFipLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLGGWL 245
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1160419548 249 V-FIFSSKVKFVMEILMFSFVFVWARATLPRFRYDLLMSLTWKSFLPLSLVFLMVV 303
Cdd:pfam00146 246 GpFPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLLT 301
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
2-311 1.32e-92

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 278.17  E-value: 1.32e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548   2 FFVGLLSFLWSFVFVLVAVAFFTLLERKGLSYFQTRKGPNKVGVMGLLQPIADAVKLFLKELVFPSLSNKMWFLLAPFVS 81
Cdd:COG1005     8 LLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILA 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548  82 LSVALVMWVLTPFINS--ISYIEYGILLFLCISSLNVYGLMMAGWTSNSKYALLGSMRGVAQTISYEISMSVILLLCFFL 159
Cdd:COG1005    88 FIPALLAFAVIPFGPGlvLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLL 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548 160 MGSYMFDEFL---IERFSFWKLMPVMMLMFLVSVMAETNRAPFDFAEGESELVSGFNVEYGGGPFALIFLGEYANIMFMG 236
Cdd:COG1005   168 AGSLNLSEIVeaqAGGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVS 247
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548 237 MMVSIVWCGGFSVFIFSSKVK-------FVMEILMFSFVFVWARATLPRFRYDLLMSLTWKSFLPLSLVFLMVVMMMKLL 309
Cdd:COG1005   248 ALATTLFLGGWLGPFPILPLGglpgilwFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVLTAAVVLL 327

                  ..
gi 1160419548 310 LL 311
Cdd:COG1005   328 FG 329
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-303 2.00e-85

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 259.74  E-value: 2.00e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548   1 VFFVGLLSFLWSFVFVLVAVAFFTLLERKGLSYFQTRKGPNKVGVMGLLQPIADAVKLFLKELVFPSLSNKMWFLLAPFV 80
Cdd:PRK06076    8 LLLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVI 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548  81 SLSVALVMWVLTPF--INSISYIEYGILLFLCISSLNVYGLMMAGWTSNSKYALLGSMRGVAQTISYEISMSVILLLCFF 158
Cdd:PRK06076   88 AFIPAFLAWAVIPFgpELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVL 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548 159 LMGSYMFDEFLIERFSFWK--LMPVMMLMFLVSVMAETNRAPFDFAEGESELVSGFNVEYGGGPFALIFLGEYANIMFMG 236
Cdd:PRK06076  168 LAGSLNLSDIVEAQFLSWNiiPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVS 247
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1160419548 237 MMVSIVWCGGFSVFIFSSK-----VKFVMEILMFSFVFVWARATLPRFRYDLLMSLTWKSFLPLSLVFLMVV 303
Cdd:PRK06076  248 ALITTLFLGGWLPPFPLGGgipgaIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLLT 319
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
6-303 8.90e-82

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 250.42  E-value: 8.90e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548   6 LLSFLWSFVFVLVAVAFFTLLERKGLSYFQTRKGPNKVGVMGLLQPIADAVKLFLKELVFPSLSNKMWFLLAPFVSLSVA 85
Cdd:MTH00216    9 LIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTLA 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548  86 LVMWVLTPFI--NSISYIEYGILLFLCISSLNVYGLMMAGWTSNSKYALLGSMRGVAQTISYEISMSVILLLCFFLMGSY 163
Cdd:MTH00216   89 LIVWGVIPYErgVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGSL 168
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548 164 MFDEFLIERFS----FWKLMPVMMlMFLVSVMAETNRAPFDFAEGESELVSGFNVEYGGGPFALIFLGEYANIMFMGMMV 239
Cdd:MTH00216  169 SITEIVLAQNNgiwfFFPLFPVAI-MFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSCLT 247
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1160419548 240 SIVWCGGFS---VFIFSSKVKFVMEILMFSFVFVWARATLPRFRYDLLMSLTWKSFLPLSLVFLMVV 303
Cdd:MTH00216  248 TILFLGGWLspiKYFKGGAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFV 314
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
14-303 4.83e-81

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 248.49  E-value: 4.83e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548  14 VFVLVAVAFFTLLERKGLSYFQTRKGPNKVGVMGLLQPIADAVKLFLKELVFPSLSNKMWFLLAPFVSLSVALVMWVLTP 93
Cdd:MTH00054   13 VPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAFIAWGVIP 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548  94 FINSI--SYIEYGILLFLCISSLNVYGLMMAGWTSNSKYALLGSMRGVAQTISYEISMSVILLLCFFLMGSYMFDEFLIE 171
Cdd:MTH00054   93 YGEGVvlSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSLNLTEIVLA 172
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548 172 RFSFWKLMPVM--MLMFLVSVMAETNRAPFDFAEGESELVSGFNVEYGGGPFALIFLGEYANIMFMGMMVSIVWCGGFSV 249
Cdd:MTH00054  173 QKNIWFIFPLFpaAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVILFLGGWLV 252
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1160419548 250 FI-----FSSKVKFVMEILMFSFVFVWARATLPRFRYDLLMSLTWKSFLPLSLVFLMVV 303
Cdd:MTH00054  253 ISgptsyFSNFVWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLV 311
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
13-297 5.18e-70

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 221.04  E-value: 5.18e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548  13 FVFVLVAVAFFTLLERKGLSYFQTRKGPNKVGVMGLLQPIADAVKLFLKELVFPSLSNKMWFLLAPFVSLSVALVMWVLT 92
Cdd:MTH00029   17 FVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAILAWAIV 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548  93 PFINSI--SYIEYGILLFLCISSLNVYGLMMAGWTSNSKYALLGSMRGVAQTISYEISMSVILLLCFFLMGSYMFDEFLI 170
Cdd:MTH00029   97 TMDQGVflSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLNISEIVI 176
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548 171 ERFSFWKLMPVM--MLMFLVSVMAETNRAPFDFAEGESELVSGFNVEYGGGPFALIFLGEYANIMFMGMMVSIVWCGGFS 248
Cdd:MTH00029  177 SQRSVWLIIPLFpaAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIFFLGGWL 256
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1160419548 249 VFIFS------------------SKVKFVMEILMFSFVFVWARATLPRFRYDLLMSLTWKSFLPLSL 297
Cdd:MTH00029  257 SPLDGiptppeafsifeqiasskSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSL 323
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
9-308 2.20e-61

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 196.66  E-value: 2.20e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548   9 FLWSFVFVLVAVAFFTLLERKGLSYFQTRKGPNKVGVMGLLQPIADAVKLFLKELVFPSLSNKMWFLLAPFVSLSVALVM 88
Cdd:MTH00090    2 LLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLE 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548  89 WVLTPFINSISYIEYGILLFLCISSLNVYGLMMAGWTSNSKYALLGSMRGVAQTISYEISMSVILLLCFFLMGSYMFdef 168
Cdd:MTH00090   82 WFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSF--- 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548 169 lieRFSFWKLMPVMMLMFLVSVMAETNRAPFDFAEGESELVSGFNVEYGGGPFALIFLGEYANIMFMGMMVSIVWcggfs 248
Cdd:MTH00090  159 ---VSSFSLSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLF----- 230
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548 249 vFIFSskvkFVMEILMFSfVFVWARATLPRFRYDLLMSLTWKSFLPLSLVFLMVVMMMKL 308
Cdd:MTH00090  231 -FKFS----FLMLFLIFS-LLIFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLGFFVVLFI 284
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
3-303 8.84e-58

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 187.82  E-value: 8.84e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548   3 FVGLLSFLWSFVFVLVAVAFFTLLERKGLSYFQTRKGPNKVGVMGLLQPIADAVKLFLKELVFpSLSNKMWF-LLAPFVS 81
Cdd:MTH00058    1 IFGLVSGLEGLLIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVY-GFQSRSWFsLFGVFLL 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548  82 LSVALVMWVLTPFINSISYIEYGILLFLCISSLNVYGLMMAGWTSNSKYALLGSMRGVAQTISYEISMSVILLLCFFLMG 161
Cdd:MTH00058   80 VLLVVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYG 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548 162 SYMFDEFLIERFSFWKLMPVMMLMFLVSVMAETNRAPFDFAEGESELVSGFNVEYGGGPFALIFLGEYANIMFMGMMVSI 241
Cdd:MTH00058  160 SYSLVDFYYSGWLSVLLFPLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSV 239
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1160419548 242 VWCGGFSVFIFsskvkfvmeILMFSFVFVWARATLPRFRYDLLMSLTWKSFLPLSLVFLMVV 303
Cdd:MTH00058  240 LFFGGGFVSIM---------LLFHLLFFMWARATLPRVRYDYFVNFFWEYCLVLLILSLFVI 292
ndhA CHL00032
NADH dehydrogenase subunit 1
2-311 1.75e-44

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 155.11  E-value: 1.75e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548   2 FFVGLLSFLWSFVFVLVAVAFFTL-------LERKGLSYFQTRKGPNKVGVMGLLQPIADAVKLFLKELVFPSLSNKMWF 74
Cdd:CHL00032   19 SLKEVYGLIWILVPILTLVLGITIgvlvivwLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLF 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548  75 LLAPFVSLSVALVMWVLTPFINSI--SYIEYGILLFLCISSLNVYGLMMAGWTSNSKYALLGSMRGVAQTISYEISMSVI 152
Cdd:CHL00032   99 SIGPSIAVISILLSYLVIPFGYHLvlADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLC 178
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548 153 LLLCFFLMGSYMFDEfLIE---RFSFWKL----MPVMMLMFLVSVMAETNRAPFDFAEGESELVSGFNVEYGGGPFALIF 225
Cdd:CHL00032  179 VLSISLLSNSLSTVD-IVEaqsKYGFWGWnlwrQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFY 257
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548 226 LGEYANIMFMGMMVSIVWCGGFSV---FIF------SSKVKFVMEILM-----------FSFVFVWARATLPRFRYDLLM 285
Cdd:CHL00032  258 VASYLNLLVSSLFVTVLYLGGWNLsipYIFipelfeINKTGGVFGTTIgifitlaktylFLFISITTRWTLPRLRMDQLL 337
                         330       340
                  ....*....|....*....|....*.
gi 1160419548 286 SLTWKSFLPLSLVFLMVVMMMKLLLL 311
Cdd:CHL00032  338 NLGWKFLLPISLGNLLLTTSFQLLSL 363
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
6-304 1.25e-23

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 98.33  E-value: 1.25e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548   6 LLSFLWSFVFVLVAVA---FFTLLERKGLSYFQTRKGPnkvgvmGLLQPIADAVKLFLKELVFPSLSNKMwFLLAPFVSL 82
Cdd:COG0650     1 MMLILLALLQLLLALLlapLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASWL-FRAAPYVAL 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548  83 SVALVMWVLTPFINSISYIEYG--ILLFLCISSLNVYGLMMAGWTSNSKYALLGSMRGVAQTISYEISMSVILLLCFFLM 160
Cdd:COG0650    74 AAMLLAALLVPVLTTGPPLSFSgdLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLA 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548 161 GSYMFDEFL-----IERFSFWKLMPVMMLMFLVSVMAETNRAPFDFAEGESELVSGFNVEYGGGPFALIFLGEY-ANIMF 234
Cdd:COG0650   154 GSTSLSDIVayqaaHGPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAAlKLFVL 233
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419548 235 MGMMVSIVWCGGFSVFIFSSKVKFVMEILMFSFVFVWARATLPRFRYDLLMSLTWKSFLPLSLVFLMVVM 304
Cdd:COG0650   234 LSLFVNLFLPWGIALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLAVL 303
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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