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Conserved domains on  [gi|1160419552|gb|AQZ26179|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Tropidomya abbreviata]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009590)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-159 7.82e-10

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214437  Cd Length: 163  Bit Score: 54.51  E-value: 7.82e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419552   1 MIIFFFTMLVVTLVSFLSMVSNPLNIGVVVLLLSMIFSWMISLSMSSWYGCILFIIYVGGLLVMFSYAVVLASNPV---- 76
Cdd:MTH00152    1 MSLMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIGLTLSSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLfgsn 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419552  77 -AKVISWEVLLLELVVLLVFLVELINQNPKLEFLVDLLKHSMFWdGVMLSVSSGSLSLIGLVIYLFLCLVLVVKISMFLN 155
Cdd:MTH00152   81 fKFVFFSLTLFGFLGLFFFFLYLYSSGGLSLSSLFDGSSGSLSF-GGGLYSSSGWSIFVFLAVLLLIVMVSVVKICYYEE 159


                  ....
gi 1160419552 156 SPFR 159
Cdd:MTH00152  160 GSLR 163
 
Name Accession Description Interval E-value
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-159 7.82e-10

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 54.51  E-value: 7.82e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419552   1 MIIFFFTMLVVTLVSFLSMVSNPLNIGVVVLLLSMIFSWMISLSMSSWYGCILFIIYVGGLLVMFSYAVVLASNPV---- 76
Cdd:MTH00152    1 MSLMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIGLTLSSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLfgsn 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419552  77 -AKVISWEVLLLELVVLLVFLVELINQNPKLEFLVDLLKHSMFWdGVMLSVSSGSLSLIGLVIYLFLCLVLVVKISMFLN 155
Cdd:MTH00152   81 fKFVFFSLTLFGFLGLFFFFLYLYSSGGLSLSSLFDGSSGSLSF-GGGLYSSSGWSIFVFLAVLLLIVMVSVVKICYYEE 159


                  ....
gi 1160419552 156 SPFR 159
Cdd:MTH00152  160 GSLR 163
 
Name Accession Description Interval E-value
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-159 7.82e-10

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 54.51  E-value: 7.82e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419552   1 MIIFFFTMLVVTLVSFLSMVSNPLNIGVVVLLLSMIFSWMISLSMSSWYGCILFIIYVGGLLVMFSYAVVLASNPV---- 76
Cdd:MTH00152    1 MSLMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIGLTLSSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLfgsn 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419552  77 -AKVISWEVLLLELVVLLVFLVELINQNPKLEFLVDLLKHSMFWdGVMLSVSSGSLSLIGLVIYLFLCLVLVVKISMFLN 155
Cdd:MTH00152   81 fKFVFFSLTLFGFLGLFFFFLYLYSSGGLSLSSLFDGSSGSLSF-GGGLYSSSGWSIFVFLAVLLLIVMVSVVKICYYEE 159


                  ....
gi 1160419552 156 SPFR 159
Cdd:MTH00152  160 GSLR 163
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 1-162 2.06e-07

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 47.69  E-value: 2.06e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419552   1 MIIFFFTMLVVTLVSFLSMVSNPLNIGVVVLLLSMIFSWMISLSMSSWYGCILFIIYVGGLLVMFSYAVVLASNPvaKVI 80
Cdd:MTH00212    1 MLLSLLLSLLLLLMLLFPLSAHPLTLGVSLLLSSLLSCLIITMESNSWYGYILFLIYIGGLLVLFGYMVALSPNE--HLF 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419552  81 SWEVLLLELVVLLVFLVELINQNPKLEFLVDLLKHSMFWDGVMLSVSSGSLSLIGLVIYLFLCLVLVVKISMFLNSPFRS 160
Cdd:MTH00212   79 FKKYFKGFGMILISLNLYLLLMTLGSSNFSPMLNLKLELNVSKILSNNNIPILLFLGLILLIALLMVVKICQYYKGPLRP 158


                  ..
gi 1160419552 161 FS 162
Cdd:MTH00212  159 FL 160
ND6 MTH00015
NADH dehydrogenase subunit 6; Validated
 1-162 3.25e-07

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 164590  Cd Length: 155  Bit Score: 47.16  E-value: 3.25e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419552   1 MIIFFFTMLVVTLVSFLSMVSNPLNIGVVVLLLSMIFSWMISLSMSSWYGCILFIIYVGGLLVMFSYAVVLASNPVAKVI 80
Cdd:MTH00015    1 MSLSFFLILMISLTCSLFLATTPITLGINILMMALLLATTMASALSSWFAFLTFLIYVGGMLVMFAYFLALTPNQQLNLG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419552  81 SWEVLLLELVVLLVFLVELINQNPKLEFlvdllkhSMFWDGVMLSVSSGSLSLIGLVIYLFLCLVLVVKISMFLNSPFRS 160
Cdd:MTH00015   81 PMAKYTLITLLTLSTTLKLTNPPSPSFF-------SSTQGNTFLYQPENAPLLIFLALILLLTMVIVVKLTRRSSGPLRP 153


                  ..
gi 1160419552 161 FS 162
Cdd:MTH00015  154 FK 155
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-162 3.16e-06

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 44.41  E-value: 3.16e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419552   3 IFFFTMLVVTLVSFLSMVSNPLNIGVVVLLLSMIFSWMISLSMSS-WYGCILFIIYVGGLLVMFSYAVVLASNPVAKvIS 81
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSfWFSYILFLIFLGGMLVLFIYITSLASNEKFK-FS 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160419552  82 WEVLLLELVVLLVFLVELINQNPKLEFLVDLLKHSMFWDGVMLSVSSGSLSLIGLVIYLFLCLVLVVKISMFLNSPFRSF 161
Cdd:MTH00166   80 LKLLILFLLMLLLMLNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKITNIFKGPLRSK 159


                  .
gi 1160419552 162 S 162
Cdd:MTH00166  160 N 160
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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