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Conserved domains on  [gi|1182039256|gb|ARJ26128|]
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hypothetical protein B7469_00030 (plasmid) [Staphylococcus lugdunensis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3847 super family cl15196
Protein of unknown function (DUF3847); A family of uncharacterized proteins found by ...
 5-62 6.69e-05

Protein of unknown function (DUF3847); A family of uncharacterized proteins found by clustering human gut metagenomic sequences.


The actual alignment was detected with superfamily member pfam12958:

Pssm-ID: 432900  Cd Length: 81  Bit Score: 37.36  E-value: 6.69e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1182039256  5 KNLKKTNAAIEKAELRKNRLKN----LDRKERAHRLIRKGAMLEKYF-ECEHLSPDETEELLK 62
Cdd:pfam12958  7 AEIEKAEKKLRQAQHREKRLENrlkyLERKERTHRLCTRGAMLESIApEPKDLTDEEVYDLLE 69
 
Name Accession Description Interval E-value
DUF3847 pfam12958
Protein of unknown function (DUF3847); A family of uncharacterized proteins found by ...
 5-62 6.69e-05

Protein of unknown function (DUF3847); A family of uncharacterized proteins found by clustering human gut metagenomic sequences.


Pssm-ID: 432900  Cd Length: 81  Bit Score: 37.36  E-value: 6.69e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1182039256  5 KNLKKTNAAIEKAELRKNRLKN----LDRKERAHRLIRKGAMLEKYF-ECEHLSPDETEELLK 62
Cdd:pfam12958  7 AEIEKAEKKLRQAQHREKRLENrlkyLERKERTHRLCTRGAMLESIApEPKDLTDEEVYDLLE 69
 
Name Accession Description Interval E-value
DUF3847 pfam12958
Protein of unknown function (DUF3847); A family of uncharacterized proteins found by ...
 5-62 6.69e-05

Protein of unknown function (DUF3847); A family of uncharacterized proteins found by clustering human gut metagenomic sequences.


Pssm-ID: 432900  Cd Length: 81  Bit Score: 37.36  E-value: 6.69e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1182039256  5 KNLKKTNAAIEKAELRKNRLKN----LDRKERAHRLIRKGAMLEKYF-ECEHLSPDETEELLK 62
Cdd:pfam12958  7 AEIEKAEKKLRQAQHREKRLENrlkyLERKERTHRLCTRGAMLESIApEPKDLTDEEVYDLLE 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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