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Conserved domains on  [gi|1219744285|gb|ASM98328|]
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aerobactin siderophore receptor iutA [Vibrio vulnificus NBRC 15645 = ATCC 27562]

Protein Classification

TonB-dependent receptor( domain architecture ID 10102105)

TonB-dependent receptor may act as a channel to allow import of extracellular nutrients, such as iron-siderophore complexes or non-Fe compounds

Gene Ontology:  GO:0015891|GO:0015267|GO:0055085
PubMed:  12409204

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
ligand_gated_channel cd01347
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ...
 54-718 2.57e-76

TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.


:

Pssm-ID: 238657 [Multi-domain]  Cd Length: 635  Bit Score: 257.76  E-value: 2.57e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285  54 TVWYIESDKIEQeyRGGKTLGDILASaIPSLDVSSGART-NLGQNLRGRKM---LVMIDGVSLQSSRSI-SRHLDSIDPF 128
Cdd:cd01347     1 SVSVITAEDIEK--QPATSLADLLRR-IPGVSVTRGGGGgGSTISIRGFGPdrtLVLVDGLPLASSNYGrGVDLNTIPPE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 129 NVDRIEVLSGSTS-IYGAGASGGVINIITKKARSE-ELEFESYVG-GTSGFNSSEDFDYKVAQsvsGGNEKVQARTSVVY 205
Cdd:cd01347    78 LIERVEVLKGPSSaLYGSGAIGGVVNIITKRPTDEfGGSVTAGYGsDNSGSSGGGGFDVSGAL---ADDGAFGARLYGAY 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 206 TETQGFFDasgtivtpDISQGSLQFNQTVDFLTTVSVDVSETQKLNFLAQYYDSQQDSPYGLYIVGRDFVDVRKGFESD- 284
Cdd:cd01347   155 RDGDGTID--------GDGQADDSDEERYNVAGKLDWRPDDDTRLTLDAGYQDQDADGPGGTLPANGTGSSLGGGPSSNt 226

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 285 --------REHGTKRMMLSASYaDEQFLGQQLIAEASYRKEDQTYTPYYQSSGQQITDVIS------------------- 337
Cdd:cd01347   227 ngdrdwdyRDRYRKRASLGLEH-DLNDTGWTLRANLSYSYTDNDGDPLILNGGNNAAGGDLgrsgysserdttqlgfdag 305

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 338 LKAALAKSFDKLNIVYGIDAYQDKLDSNQAlydstiannsgnlvnktyaqvgrypgvevssvAAFAQVDYAITDDWRVEG 417
Cdd:cd01347   306 LNAPFGTGPVAHTLTLGVEYRREELDEKQT--------------------------------ALYAQDTIELTDDLTLTL 353

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 418 GVRYQYMLNKIDDFVGynqqkkiaagngtsadAVPGGETDYSVALFNLGTIYHLNRDSQVWANFSQGFDLADPAKYYGQG 497
Cdd:cd01347   354 GLRYDHYDQDSKDTIA----------------GGTTAKKSYSHWSPSLGLVYKLTDGLSLYASYSQGFRAPSLGELYGGG 417

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 498 NYTLvgdhwqlndSINVNQSKMSGIKTNSVELGYRLESGDVNLQTAAYYSQSDKNIKYNKSTLLIEEIE------DKKRV 571
Cdd:cd01347   418 SHGG---------TAAVGNPNLKPEKSKQYELGLKYDPGDGLTLSAALFRIDIKNEIVSTPTNTGLGLVtvyvngGKARI 488

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 572 YGLEAMLSYWVHDNIQLGASGHYVVSEVK-GDKGWEDYDAGYASTSKANAWAGWSDADLniKLQSQTMFDYEDASNN--- 647
Cdd:cd01347   489 RGVELEASYDLTDGLGLTGSYTYTDTEVKrTDGATTGNRLPGIPKHTANLGLDYELPDE--GLTAGGGVRYRGKQYAdta 566

                         650       660       670       680       690       700       710
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1219744285 648 ------KLNGYTLFDLVGSYQLPVG-SLGFGIQNLLDKEYTTAWGQRAqliysahyeSAAYDYKGRGRTYTLNYQVKF 718
Cdd:cd01347   567 ngnntvKVPGYTLVDLSASYQFTKNlTLRLGVNNLFDKDYYTSLSVRG---------SGLYGYYGPGRTYYLSVSYKF 635
 
Name Accession Description Interval E-value
ligand_gated_channel cd01347
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ...
 54-718 2.57e-76

TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.


Pssm-ID: 238657 [Multi-domain]  Cd Length: 635  Bit Score: 257.76  E-value: 2.57e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285  54 TVWYIESDKIEQeyRGGKTLGDILASaIPSLDVSSGART-NLGQNLRGRKM---LVMIDGVSLQSSRSI-SRHLDSIDPF 128
Cdd:cd01347     1 SVSVITAEDIEK--QPATSLADLLRR-IPGVSVTRGGGGgGSTISIRGFGPdrtLVLVDGLPLASSNYGrGVDLNTIPPE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 129 NVDRIEVLSGSTS-IYGAGASGGVINIITKKARSE-ELEFESYVG-GTSGFNSSEDFDYKVAQsvsGGNEKVQARTSVVY 205
Cdd:cd01347    78 LIERVEVLKGPSSaLYGSGAIGGVVNIITKRPTDEfGGSVTAGYGsDNSGSSGGGGFDVSGAL---ADDGAFGARLYGAY 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 206 TETQGFFDasgtivtpDISQGSLQFNQTVDFLTTVSVDVSETQKLNFLAQYYDSQQDSPYGLYIVGRDFVDVRKGFESD- 284
Cdd:cd01347   155 RDGDGTID--------GDGQADDSDEERYNVAGKLDWRPDDDTRLTLDAGYQDQDADGPGGTLPANGTGSSLGGGPSSNt 226

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 285 --------REHGTKRMMLSASYaDEQFLGQQLIAEASYRKEDQTYTPYYQSSGQQITDVIS------------------- 337
Cdd:cd01347   227 ngdrdwdyRDRYRKRASLGLEH-DLNDTGWTLRANLSYSYTDNDGDPLILNGGNNAAGGDLgrsgysserdttqlgfdag 305

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 338 LKAALAKSFDKLNIVYGIDAYQDKLDSNQAlydstiannsgnlvnktyaqvgrypgvevssvAAFAQVDYAITDDWRVEG 417
Cdd:cd01347   306 LNAPFGTGPVAHTLTLGVEYRREELDEKQT--------------------------------ALYAQDTIELTDDLTLTL 353

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 418 GVRYQYMLNKIDDFVGynqqkkiaagngtsadAVPGGETDYSVALFNLGTIYHLNRDSQVWANFSQGFDLADPAKYYGQG 497
Cdd:cd01347   354 GLRYDHYDQDSKDTIA----------------GGTTAKKSYSHWSPSLGLVYKLTDGLSLYASYSQGFRAPSLGELYGGG 417

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 498 NYTLvgdhwqlndSINVNQSKMSGIKTNSVELGYRLESGDVNLQTAAYYSQSDKNIKYNKSTLLIEEIE------DKKRV 571
Cdd:cd01347   418 SHGG---------TAAVGNPNLKPEKSKQYELGLKYDPGDGLTLSAALFRIDIKNEIVSTPTNTGLGLVtvyvngGKARI 488

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 572 YGLEAMLSYWVHDNIQLGASGHYVVSEVK-GDKGWEDYDAGYASTSKANAWAGWSDADLniKLQSQTMFDYEDASNN--- 647
Cdd:cd01347   489 RGVELEASYDLTDGLGLTGSYTYTDTEVKrTDGATTGNRLPGIPKHTANLGLDYELPDE--GLTAGGGVRYRGKQYAdta 566

                         650       660       670       680       690       700       710
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1219744285 648 ------KLNGYTLFDLVGSYQLPVG-SLGFGIQNLLDKEYTTAWGQRAqliysahyeSAAYDYKGRGRTYTLNYQVKF 718
Cdd:cd01347   567 ngnntvKVPGYTLVDLSASYQFTKNlTLRLGVNNLFDKDYYTSLSVRG---------SGLYGYYGPGRTYYLSVSYKF 635
CirA COG1629
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
35-688 8.33e-72

Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];


Pssm-ID: 441236 [Multi-domain]  Cd Length: 644  Bit Score: 245.89  E-value: 8.33e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285  35 DKMVVVSSRTPKAISDIPGTVWYIESDKIEQeyRGGKTLGDILASaIPSLDVSSGARTNLGQNLRG-----RKMLVMIDG 109
Cdd:COG1629     2 EEVVVTATRTDESLQDVPGSVSVISREQLED--QPATDLGDLLRR-VPGVSVTSAGGGAGQISIRGfggggNRVLVLVDG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 110 VSLQSSRSISRHLDSIDPFNVDRIEVLSG-STSIYGAGASGGVINIITKKARSeelEFESYVGGTSGFNSsedfDYKVAQ 188
Cdd:COG1629    79 VPLNDPSGGDGGLSYIDPEDIERVEVLRGpSSALYGSGALGGVINIVTKKPKD---GKGGEVSASYGSYG----TYRASL 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 189 SVSGGNEKVQARTSVVYTETQGFFDASGtivtpdisqgslqfNQTVDFLTTVSVDVSETQKLNFLAQYYDSQQDSPYGL- 267
Cdd:COG1629   152 SLSGGNGKLAYRLSASYRDSDGYRDNSD--------------SDRYNLRAKLGYQLGDDTRLTLSASYSDSDQDSPGYLt 217

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 268 --YIVGRDFVDVRKGFESDREHGTKRMMLSASYADEQFL-GQQLIAEASYRKE----DQTYTPYYQSSGQQI-----TDV 335
Cdd:COG1629   218 laALRPRGAMDDGTNPYSNDTDDNTRDRYSLSLEYEHLGdGLKLSASAYYRYDdtdlDSDFTPTPADGGTLEqtdfdNRT 297

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 336 ISLKAALAKSF---DKLNIVYGIDAYQDKLDSNQalydstIANNSGNLVNKTYAQVGRYPGvEVSSVAAFAQVDYAITDD 412
Cdd:COG1629   298 YGLELRLTYDLgfgGKHTLLVGLDYQRQDLDGSG------YPLDLGSGSLPTLTSGADDDG-TTTSLALYAQDTYKLTDK 370

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 413 WRVEGGVRYQYMLNKIDDFVgynqqkkiaagngtSADAVPGGETDYSVALFNLGTIYHLNRDSQVWANFSQGFDLADPAK 492
Cdd:COG1629   371 LTLTAGLRYDYVSYDVDDTV--------------TGTDSASGSRSYSAFSPSLGLTYQLSPNLSLYASYSRGFRAPTFGE 436

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 493 YYGQGNYTLvgdhwqlndsiNVNQSKMSGIKTNSVELGYRLE--SGDVNLQTAAYYSQSDK---NIKYNKSTLLIEEIE- 566
Cdd:COG1629   437 LYANGTDPY-----------SVGNPDLKPETSTNYELGLRYRllDGRLSLSLALFYSDVDNeilSVPLPNDSGFSTYYTn 505

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 567 -DKKRVYGLEAMLSYWVHDNIQLGASGHYVVSEVKGDKGWEDYDAG----YASTSKANAWAGWS-----DADLNIKLQSQ 636
Cdd:COG1629   506 aGKARSYGVELELSYQLTPGLSLNASYSYTDAKFDDDTDGSADLDGnrlpGVPPLTANLGLTYEfpggwSLGLGVRYVGD 585

                         650       660       670       680       690
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1219744285 637 TMFDYEDaSNNKLNGYTLFDLVGSYQLPVG-SLGFGIQNLLDKEYTTAWGQRA 688
Cdd:COG1629   586 RYLDDAN-TQGAPGGYTLVDLGAGYRFGDNlTLSLGVDNLFDKKYATSLSVRA 637
TonB-siderophor TIGR01783
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of ...
 50-718 9.21e-70

TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]


Pssm-ID: 273805 [Multi-domain]  Cd Length: 651  Bit Score: 240.78  E-value: 9.21e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285  50 DIPGTVWYIESDKIEQeyRGGKTLGDILASAIPSLDVSSGARTNLG-QNLRGRKMLVMIDGVSLQSSRSISR-HLDSIDP 127
Cdd:TIGR01783   1 DIPQSVSVITRQELED--QQAGSLSEALQRVPGVVVGGSGGTTQFGnITIRGFGLEVDIDNVYLDGVPLLSRgNLAIVDP 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 128 FNVDRIEVLSGSTS-IYGAGASGGVINIITKKARSeelEFESYVGGTSGFNSSedFDYKVAQSVS-GGNEKVQARTSVVY 205
Cdd:TIGR01783  79 AMVERVEVLRGPASlLYGGSAPGGVINIVTKRPQD---EPKGSVTFGAGTRSG--YRTAFDLGGPlGADGTFRGRLNGAR 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 206 TETQGFFDASGTivtpdisqgslqfnQTVDFLTTVSVDVSETQKLNFLAQYYDSQQDSPYGLYIVGRDfvDVRKGFESDR 285
Cdd:TIGR01783 154 QDGDSFYDGAGE--------------ETRLGATATDWQLDDRTLLRLGAYYQKERDRGGYGGLPASGG--TSGRDLSSDR 217

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 286 EHGT--KRMMLSASYADEQFLGQQLIAEASYRKEDQTYTPYyqssgqQITDVISLKAALAKSFDKLNIVYGIDAYQDK-- 361
Cdd:TIGR01783 218 YLGTssNRNYDDREYLSYGLSLEYQFNDVWTGKQNLRYSYF------DTDSNQVQASGYSSDGGLFGRSLTVVNVKQDrv 291

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 362 -----LDSNQALYDSTIA---NNSGNLVNKTYAQVGRYPGVEVSSVAAFAQVDYAITDDWRVEGGVRYQYMLNkiddfvG 433
Cdd:TIGR01783 292 qidagLDGEFETGPIEHDlllGVSYGQRTTNRFNNTGYPSDNIYSLTATSSARTDIGDSPKDRALSSTTKALN------G 365

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 434 YNQQKKIAAGNGTSADAVPGGETDYSvalFNLGTIYHLNRDSQVWANFSQGFDLADPAKYYGQGNYT-LVGDHWQLNDSI 512
Cdd:TIGR01783 366 VALQRILLADKWTLTLGGRYDSVDVK---SNNGVAGSTGKRDDSQFTPSLGVAYKPTDDWSLYASYAeSFKPGGYYPKGA 442

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 513 NVNQSKMSGIKTNSVELGYRLESGDVNLQTAAYYSQSDKNIKYNKSTLLIEEIE-DKKRVYGLEAMLSYWVHDNIQLGAS 591
Cdd:TIGR01783 443 GNSGDILEPEKGKNYELGVRYDLGDSLLATAALFRITKDNQLVQDPVNGTFSVNaGKTRNRGVELEARGYLTPGLSLSAG 522

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 592 GHYVVSEV--KGDKGWEDYDAGYASTSKANAWAGWS----DADLNIKLQSQTMFDYEDASNN--KLNGYTLFDLVGSYQL 663
Cdd:TIGR01783 523 YTYTDAEFteDTNGDTQGNTVPFVPKHTASLWASYAppvgDNGLTLGGGVQYTGKAYVDGGNtgKVPSYTVVDLSVRYDL 602

                         650       660       670       680       690
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1219744285 664 P---VGSLGFGIQNLLDKEYTTAWGQRAqliysahyeSAAYDYKGRGRTYTLNYQVKF 718
Cdd:TIGR01783 603 TkkkNLTLALNVNNLFDRDYYTSGYRWG---------PSAYIYPGAPRTVGLSVSYDF 651
TonB_dep_Rec pfam00593
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
 235-717 1.33e-27

TonB dependent receptor; This model now only covers the conserved part of the barrel structure.


Pssm-ID: 395474 [Multi-domain]  Cd Length: 475  Bit Score: 117.18  E-value: 1.33e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 235 DFLTTVSVDVSETQKLNFLAQYYDSQQDSPYGLYIVGRDFVDVRKGFESDREHGTKRMMLSASY----ADEQFLGQQLIA 310
Cdd:pfam00593   4 LSLDLLGDDTLLTLGYDYSRYTDGLDLGLTLDGYGNDGGYLGDRPLYYGRDYSDTDRKRLSLGYdydlGDGLSWLSTLRL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 311 EASYRKEDQTYTPYYQS--------SGQQITDVISLKAALAKSFD-KLNIVYGIDAYQDKLDSNQalydstIANNSGNLV 381
Cdd:pfam00593  84 GLRYSSLDGDYTSNSSGlsgagdylSDDRLYGLYGLDGDLELSLDlSHDLLLGVELRTAGLDYRR------LDDDAYDPY 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 382 NKTYAQVGRYPGVEVSSVAAFAQVDYAITDDWRVEGGVRYQYMLNKIDDFVGYNQQKKiaagngtsadavpggeTDYSVA 461
Cdd:pfam00593 158 DPANPSSSSYSDTTTDSYGLYLQDNIKLTDRLTLTLGLRYDHYSTDGDDGNGGGDNFS----------------RSYSAF 221

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 462 LFNLGTIYHLNRDSQVWANFSQGFDLADPAKYYGQGNYTLVGdhwqlndSINVNQSKMSGIKTNSVELGYRLESGDVNLQ 541
Cdd:pfam00593 222 SPRLGLVYKPTDNLSLYASYSRGFRAPSLGELYGSGSGGGGG-------AVAGGNPDLKPETSDNYELGLKYDDGRLSLS 294

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 542 TAAYYS------QSDKNIKYNKSTLLIEEIEDKKRVYGLEAMLSYWVHDNIQLGASGHYVVSEVKGDKGWEDYDAGYAST 615
Cdd:pfam00593 295 LALFYIdiknliTSDPDGPGLGGTVYTYTNVGKARIRGVELELSGRLWGLGLSGGGYTYTDADDDADADDTGNPLPNVPR 374

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 616 SKANAWAGWSDADLNIKL-------QSQTMFDYEDASNNKLNGYTLFDLVGSYQLPVG-SLGFGIQNLLDKEYTTawgqr 687
Cdd:pfam00593 375 HTANLGLTYDFPLGGWGArlgaryvGSGERRYGDAANTFKTPGYTLVDLSAGYRLNKNlTLRLGVNNLFDKYYKR----- 449

                         490       500       510
                  ....*....|....*....|....*....|
gi 1219744285 688 aqliYSAHYESAAYDYKGRGRTYTLNYQVK 717
Cdd:pfam00593 450 ----YYSSGGGNLGGYPGPGRTFYLGLSYK 475
PRK13483 PRK13483
ligand-gated channel protein;
9-162 1.37e-12

ligand-gated channel protein;


Pssm-ID: 184080 [Multi-domain]  Cd Length: 660  Bit Score: 70.96  E-value: 1.37e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285   9 PLSTMALAIIAASTALTAQAQETSTNDKMVVVSSRTPKAISDIPGTVWYIESDKIEQEYRggKTLGDILASaIPSLDVSS 88
Cdd:PRK13483    8 VISALCLLPAVFVTHALAQAAPDKTMETVVVTASGYEQQIRDAPASISVITREDLENRFY--RDLTDALLD-VPGVVVTG 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285  89 GA-RTNLgqNLRG---RKMLVMIDGvSLQSSRSISRHLDS-------IDPFN-VDRIEVLSGS-TSIYGAGASGGVINII 155
Cdd:PRK13483   85 GGdRTDI--SLRGmgsQYTLILVDG-KRQSSRETRPNSDGpgveqawTPPLAaIERIEVIRGPmSSLYGSDAIGGVINII 161


                  ....*..
gi 1219744285 156 TKKARSE 162
Cdd:PRK13483  162 TRKVPNE 168
 
Name Accession Description Interval E-value
ligand_gated_channel cd01347
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ...
 54-718 2.57e-76

TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.


Pssm-ID: 238657 [Multi-domain]  Cd Length: 635  Bit Score: 257.76  E-value: 2.57e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285  54 TVWYIESDKIEQeyRGGKTLGDILASaIPSLDVSSGART-NLGQNLRGRKM---LVMIDGVSLQSSRSI-SRHLDSIDPF 128
Cdd:cd01347     1 SVSVITAEDIEK--QPATSLADLLRR-IPGVSVTRGGGGgGSTISIRGFGPdrtLVLVDGLPLASSNYGrGVDLNTIPPE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 129 NVDRIEVLSGSTS-IYGAGASGGVINIITKKARSE-ELEFESYVG-GTSGFNSSEDFDYKVAQsvsGGNEKVQARTSVVY 205
Cdd:cd01347    78 LIERVEVLKGPSSaLYGSGAIGGVVNIITKRPTDEfGGSVTAGYGsDNSGSSGGGGFDVSGAL---ADDGAFGARLYGAY 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 206 TETQGFFDasgtivtpDISQGSLQFNQTVDFLTTVSVDVSETQKLNFLAQYYDSQQDSPYGLYIVGRDFVDVRKGFESD- 284
Cdd:cd01347   155 RDGDGTID--------GDGQADDSDEERYNVAGKLDWRPDDDTRLTLDAGYQDQDADGPGGTLPANGTGSSLGGGPSSNt 226

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 285 --------REHGTKRMMLSASYaDEQFLGQQLIAEASYRKEDQTYTPYYQSSGQQITDVIS------------------- 337
Cdd:cd01347   227 ngdrdwdyRDRYRKRASLGLEH-DLNDTGWTLRANLSYSYTDNDGDPLILNGGNNAAGGDLgrsgysserdttqlgfdag 305

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 338 LKAALAKSFDKLNIVYGIDAYQDKLDSNQAlydstiannsgnlvnktyaqvgrypgvevssvAAFAQVDYAITDDWRVEG 417
Cdd:cd01347   306 LNAPFGTGPVAHTLTLGVEYRREELDEKQT--------------------------------ALYAQDTIELTDDLTLTL 353

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 418 GVRYQYMLNKIDDFVGynqqkkiaagngtsadAVPGGETDYSVALFNLGTIYHLNRDSQVWANFSQGFDLADPAKYYGQG 497
Cdd:cd01347   354 GLRYDHYDQDSKDTIA----------------GGTTAKKSYSHWSPSLGLVYKLTDGLSLYASYSQGFRAPSLGELYGGG 417

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 498 NYTLvgdhwqlndSINVNQSKMSGIKTNSVELGYRLESGDVNLQTAAYYSQSDKNIKYNKSTLLIEEIE------DKKRV 571
Cdd:cd01347   418 SHGG---------TAAVGNPNLKPEKSKQYELGLKYDPGDGLTLSAALFRIDIKNEIVSTPTNTGLGLVtvyvngGKARI 488

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 572 YGLEAMLSYWVHDNIQLGASGHYVVSEVK-GDKGWEDYDAGYASTSKANAWAGWSDADLniKLQSQTMFDYEDASNN--- 647
Cdd:cd01347   489 RGVELEASYDLTDGLGLTGSYTYTDTEVKrTDGATTGNRLPGIPKHTANLGLDYELPDE--GLTAGGGVRYRGKQYAdta 566

                         650       660       670       680       690       700       710
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1219744285 648 ------KLNGYTLFDLVGSYQLPVG-SLGFGIQNLLDKEYTTAWGQRAqliysahyeSAAYDYKGRGRTYTLNYQVKF 718
Cdd:cd01347   567 ngnntvKVPGYTLVDLSASYQFTKNlTLRLGVNNLFDKDYYTSLSVRG---------SGLYGYYGPGRTYYLSVSYKF 635
CirA COG1629
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
35-688 8.33e-72

Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];


Pssm-ID: 441236 [Multi-domain]  Cd Length: 644  Bit Score: 245.89  E-value: 8.33e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285  35 DKMVVVSSRTPKAISDIPGTVWYIESDKIEQeyRGGKTLGDILASaIPSLDVSSGARTNLGQNLRG-----RKMLVMIDG 109
Cdd:COG1629     2 EEVVVTATRTDESLQDVPGSVSVISREQLED--QPATDLGDLLRR-VPGVSVTSAGGGAGQISIRGfggggNRVLVLVDG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 110 VSLQSSRSISRHLDSIDPFNVDRIEVLSG-STSIYGAGASGGVINIITKKARSeelEFESYVGGTSGFNSsedfDYKVAQ 188
Cdd:COG1629    79 VPLNDPSGGDGGLSYIDPEDIERVEVLRGpSSALYGSGALGGVINIVTKKPKD---GKGGEVSASYGSYG----TYRASL 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 189 SVSGGNEKVQARTSVVYTETQGFFDASGtivtpdisqgslqfNQTVDFLTTVSVDVSETQKLNFLAQYYDSQQDSPYGL- 267
Cdd:COG1629   152 SLSGGNGKLAYRLSASYRDSDGYRDNSD--------------SDRYNLRAKLGYQLGDDTRLTLSASYSDSDQDSPGYLt 217

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 268 --YIVGRDFVDVRKGFESDREHGTKRMMLSASYADEQFL-GQQLIAEASYRKE----DQTYTPYYQSSGQQI-----TDV 335
Cdd:COG1629   218 laALRPRGAMDDGTNPYSNDTDDNTRDRYSLSLEYEHLGdGLKLSASAYYRYDdtdlDSDFTPTPADGGTLEqtdfdNRT 297

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 336 ISLKAALAKSF---DKLNIVYGIDAYQDKLDSNQalydstIANNSGNLVNKTYAQVGRYPGvEVSSVAAFAQVDYAITDD 412
Cdd:COG1629   298 YGLELRLTYDLgfgGKHTLLVGLDYQRQDLDGSG------YPLDLGSGSLPTLTSGADDDG-TTTSLALYAQDTYKLTDK 370

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 413 WRVEGGVRYQYMLNKIDDFVgynqqkkiaagngtSADAVPGGETDYSVALFNLGTIYHLNRDSQVWANFSQGFDLADPAK 492
Cdd:COG1629   371 LTLTAGLRYDYVSYDVDDTV--------------TGTDSASGSRSYSAFSPSLGLTYQLSPNLSLYASYSRGFRAPTFGE 436

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 493 YYGQGNYTLvgdhwqlndsiNVNQSKMSGIKTNSVELGYRLE--SGDVNLQTAAYYSQSDK---NIKYNKSTLLIEEIE- 566
Cdd:COG1629   437 LYANGTDPY-----------SVGNPDLKPETSTNYELGLRYRllDGRLSLSLALFYSDVDNeilSVPLPNDSGFSTYYTn 505

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 567 -DKKRVYGLEAMLSYWVHDNIQLGASGHYVVSEVKGDKGWEDYDAG----YASTSKANAWAGWS-----DADLNIKLQSQ 636
Cdd:COG1629   506 aGKARSYGVELELSYQLTPGLSLNASYSYTDAKFDDDTDGSADLDGnrlpGVPPLTANLGLTYEfpggwSLGLGVRYVGD 585

                         650       660       670       680       690
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1219744285 637 TMFDYEDaSNNKLNGYTLFDLVGSYQLPVG-SLGFGIQNLLDKEYTTAWGQRA 688
Cdd:COG1629   586 RYLDDAN-TQGAPGGYTLVDLGAGYRFGDNlTLSLGVDNLFDKKYATSLSVRA 637
TonB-siderophor TIGR01783
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of ...
 50-718 9.21e-70

TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]


Pssm-ID: 273805 [Multi-domain]  Cd Length: 651  Bit Score: 240.78  E-value: 9.21e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285  50 DIPGTVWYIESDKIEQeyRGGKTLGDILASAIPSLDVSSGARTNLG-QNLRGRKMLVMIDGVSLQSSRSISR-HLDSIDP 127
Cdd:TIGR01783   1 DIPQSVSVITRQELED--QQAGSLSEALQRVPGVVVGGSGGTTQFGnITIRGFGLEVDIDNVYLDGVPLLSRgNLAIVDP 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 128 FNVDRIEVLSGSTS-IYGAGASGGVINIITKKARSeelEFESYVGGTSGFNSSedFDYKVAQSVS-GGNEKVQARTSVVY 205
Cdd:TIGR01783  79 AMVERVEVLRGPASlLYGGSAPGGVINIVTKRPQD---EPKGSVTFGAGTRSG--YRTAFDLGGPlGADGTFRGRLNGAR 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 206 TETQGFFDASGTivtpdisqgslqfnQTVDFLTTVSVDVSETQKLNFLAQYYDSQQDSPYGLYIVGRDfvDVRKGFESDR 285
Cdd:TIGR01783 154 QDGDSFYDGAGE--------------ETRLGATATDWQLDDRTLLRLGAYYQKERDRGGYGGLPASGG--TSGRDLSSDR 217

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 286 EHGT--KRMMLSASYADEQFLGQQLIAEASYRKEDQTYTPYyqssgqQITDVISLKAALAKSFDKLNIVYGIDAYQDK-- 361
Cdd:TIGR01783 218 YLGTssNRNYDDREYLSYGLSLEYQFNDVWTGKQNLRYSYF------DTDSNQVQASGYSSDGGLFGRSLTVVNVKQDrv 291

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 362 -----LDSNQALYDSTIA---NNSGNLVNKTYAQVGRYPGVEVSSVAAFAQVDYAITDDWRVEGGVRYQYMLNkiddfvG 433
Cdd:TIGR01783 292 qidagLDGEFETGPIEHDlllGVSYGQRTTNRFNNTGYPSDNIYSLTATSSARTDIGDSPKDRALSSTTKALN------G 365

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 434 YNQQKKIAAGNGTSADAVPGGETDYSvalFNLGTIYHLNRDSQVWANFSQGFDLADPAKYYGQGNYT-LVGDHWQLNDSI 512
Cdd:TIGR01783 366 VALQRILLADKWTLTLGGRYDSVDVK---SNNGVAGSTGKRDDSQFTPSLGVAYKPTDDWSLYASYAeSFKPGGYYPKGA 442

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 513 NVNQSKMSGIKTNSVELGYRLESGDVNLQTAAYYSQSDKNIKYNKSTLLIEEIE-DKKRVYGLEAMLSYWVHDNIQLGAS 591
Cdd:TIGR01783 443 GNSGDILEPEKGKNYELGVRYDLGDSLLATAALFRITKDNQLVQDPVNGTFSVNaGKTRNRGVELEARGYLTPGLSLSAG 522

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 592 GHYVVSEV--KGDKGWEDYDAGYASTSKANAWAGWS----DADLNIKLQSQTMFDYEDASNN--KLNGYTLFDLVGSYQL 663
Cdd:TIGR01783 523 YTYTDAEFteDTNGDTQGNTVPFVPKHTASLWASYAppvgDNGLTLGGGVQYTGKAYVDGGNtgKVPSYTVVDLSVRYDL 602

                         650       660       670       680       690
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1219744285 664 P---VGSLGFGIQNLLDKEYTTAWGQRAqliysahyeSAAYDYKGRGRTYTLNYQVKF 718
Cdd:TIGR01783 603 TkkkNLTLALNVNNLFDRDYYTSGYRWG---------PSAYIYPGAPRTVGLSVSYDF 651
FepA COG4771
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and ...
 7-663 3.84e-51

Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism];


Pssm-ID: 443803 [Multi-domain]  Cd Length: 612  Bit Score: 188.14  E-value: 3.84e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285   7 KFPLSTMALAIIAASTALTAQAQETSTnDKMVVVSSRTPKAISDIPGTVWYIESDKIEQeyRGGKTLGDILaSAIPSLDV 86
Cdd:COG4771     1 LLLASLLLLLALAAQAADALAEDATEL-EEVVVTATRTEQSLSDAPASVSVITAEEIEK--LGATDLADAL-RLLPGVSV 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285  87 S--SGARTNLGQNLRG---RKMLVMIDGVSLQSSRSISR-HLDSIDPFNVDRIEVLSGSTS-IYGAGASGGVINIITKKA 159
Cdd:COG4771    77 TrsGGRGGSSGISIRGlggDRVLVLIDGVPVNNPALGGGgDLSYIPPDDIERIEVIRGPASaLYGSDAIGGVINIITKKP 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 160 RSeelEFESYVGGTSGFNSSEDFDYKVaqSVSGGNEKVQARTSVVYTETQGFFDASGTIVTPDISQGSLQFNQTVDFltt 239
Cdd:COG4771   157 TD---ELEGSVSLGYGSNGNGTYSGSL--SLGGPGDKLSFLLSGSYRDRDGYLDYRNGGFVGNSGYERYNLNAKLGY--- 228

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 240 vsvDVSETQKLNFLAQYYDSQQDSPYGLYIVGRDFVDVRkgfeSDREHGTKRMMLSASYADEqfLGQQLIAEASYRKEDQ 319
Cdd:COG4771   229 ---RLSDNHRLSLSGGYSRQDRDGGPPTLGDTEISSDNA----GDRDTTTDRGNYSLRYNGD--LGDNLDLSLYYSRTDR 299

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 320 TYTPYYQSSGQQITD-----VISLKAALAKSF-DKLNIVYGIDAYQDKLDSNQALYDSTiannsgnlvnktyaqvgrypg 393
Cdd:COG4771   300 DSTNGSLGGSTGSFSdsddtTYGLELDLTYPLgGNHTLTLGAEYRYDDLDSSSFLGGAD--------------------- 358

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 394 VEVSSVAAFAQVDYAITDDWRVEGGVRYQYmlnkIDDFvgynqqkkiaagngtsadavpgGETDYSVALFNLGTIYHLNR 473
Cdd:COG4771   359 ASRDTYGLFAQDEWKLTDKLTLTAGLRYDY----YSTF----------------------GASNYTAFSPRLGLRYDLSD 412

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 474 DSQVWANFSQGFDLADPAKYYGQGNYTLVGDhWQLNDSINVNQSkmsgiktNSVELG--YRLESGDVNLQTAAYYSQSDK 551
Cdd:COG4771   413 NLTLRASYGRGFRAPSLAELYGSGTGTPGRY-VLGNPDLKPETS-------DNYELGleYRLGNGGLSLSLTGFYTDIKD 484

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 552 NIKYNKSTLLIEEIE-----DKKRVYGLEAMLSYWVHDNIQLGASGHYVVSEVkgDKGWEDYDAGYASTSKANAWAGWSD 626
Cdd:COG4771   485 LIVLVPVGPGPGDVLqyenvGKARTYGLELELKYRLGKGLTLTASYTYLDSKI--DDGDTGEPLPNVPPHKANLGLDYRL 562

                         650       660       670       680
                  ....*....|....*....|....*....|....*....|...
gi 1219744285 627 ADLNIKL------QSQTMFDYEDASNNKLNGYTLFDLVGSYQL 663
Cdd:COG4771   563 PKWWLLLlltryyGGRYVTPPSGRLEGYTPGYTLLDLRASYKL 605
FecA COG4772
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism];
13-718 1.49e-42

Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism];


Pssm-ID: 443804 [Multi-domain]  Cd Length: 681  Bit Score: 164.33  E-value: 1.49e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285  13 MALAIIAASTALTAQAQETSTN-DKMVVVSSRT-PKAISDIPGTVWYIESDKIEQeyRGGKTLGDILASaIPSLDVSS-- 88
Cdd:COG4772     1 MRRALAAALLLAAAAAAEAATTlETVVVTGSRAaEARLKDVPGSVSVVDREELEN--QAATSLREVLRR-VPGVNVQEed 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285  89 --GARTNLGqnLRG------RKMLVMIDGVSLQSSRSI--SRHLDSiDPFNVDRIEVLSGSTSI-YGAGASGGVINIITK 157
Cdd:COG4772    78 gfGLRPNIG--IRGlgprrsRGITLLEDGIPIAPAPYGdpAAYYFP-DLERMERIEVLRGAAALrYGPQTVGGAINFVTR 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 158 KARsEELEFESYVGGTSgfnssedFDYKVAQ-SVSGGNEKVQARTSVVYTETQGFFDASGTivtpdisqgslqfnQTVDF 236
Cdd:COG4772   155 TIP-TAFGGELRVTGGS-------FGYRRTHaSVGGTVGNFGYLVEYSRKRGDGFRDNSGF--------------DINDF 212

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 237 LTTVSVDVSETQKLNFLAQYYDSQQDSPYGL------------------YIVGRDFVDVRKGFESDrEHGTKRMMLSASY 298
Cdd:COG4772   213 NAKLGYRLSDRQELTLKFQYYDEDANTPGGLtdaqfdadprqsyrpadqFDTRRTQLSLRYEHQLS-DNTTLTTTAYYND 291

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 299 AD-EQFLGQQLIAEASYRKEDQTYTPYYQSSGQQITdvISLKAALAKSfdKLNIVYGIDAYQDKLDSNQaLYDSTIANNS 377
Cdd:COG4772   292 FSrNWYIRQNTADPNTPGLGLRGNPRGYRSYGIEPR--LTHRFELGGV--PHTLEVGLRYHREEEDRKQ-YVNTYGQGRS 366

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 378 GNLVNKTYAQvgrypgvEVSSVAAFAQVDYAITDDWRVEGGVRYQYMLNKIDDFVGYnqqkkiAAGNGTSadavpgGETD 457
Cdd:COG4772   367 GAGLRRDRRF-------SADALAAYAQNRFELTGRLTLTPGLRYEHIRRDRTDRYST------RTGGDDS------GSNS 427

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 458 YSVALFNLGTIYHLNRDSQVWANFSQGFDLADpakyYGQGNYTlVGDHWQLNDSINVNqskmsgiktnsVELGYRLESGD 537
Cdd:COG4772   428 YSEFLPGLGLLYQLTDNLQLYANVSRGFEPPT----FGDLAYG-NGGNPDLKPEKSWN-----------YELGTRGRIGN 491

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 538 -VNLQTAAYYSQ-SDKNIKYNKSTLLIEEIE--DKKRVYGLEAMLSY----WVHDNIQLGASGHYVVSEVKGDKG--WED 607
Cdd:COG4772   492 gLSAEVALFYIDyDNELGSCSAAGGDRSTFTnaGETRHQGLELALDYdllkGGGLGLPLFAAYTYTDAEFTSDFGpvFAG 571

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 608 YDAGYASTSKANAWAGWS----DADLNIKLQSQTmfdYEDASNNKLNG-------YTLFDLVGSYQLPVG-SLGFGIQNL 675
Cdd:COG4772   572 NRLPYVPRHQLTAGLGYEhggwTANLNGRYVSEQ---FTDAANTVADGsfgkipsYTVLDLSASYDFGKNlSLFAGVNNL 648

                         730       740       750       760
                  ....*....|....*....|....*....|....*....|....
gi 1219744285 676 LDKEYttawgqraqliYSAHYESAAYDYK-GRGRTYTLNYQVKF 718
Cdd:COG4772   649 FDKRY-----------IASRAPNYAAGIRpGPPRTVYAGLRLKF 681
FhuE COG4773
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion ...
 10-718 1.62e-35

Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism];


Pssm-ID: 443805 [Multi-domain]  Cd Length: 692  Bit Score: 143.50  E-value: 1.62e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285  10 LSTMALAIIAAST---ALTAQAQETSTNDKMVV----------------VSSRTPKAISDIPGTVWYIESDKIEQeyRGG 70
Cdd:COG4773     5 LAGSGLAAAAAGAlaqAAAAAAAEATTLPEVTVtgtaegtggytaksssTATKLDTPLRETPQSVSVVTRQLIED--QGA 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285  71 KTLGDIL--ASAIPSLDVSSGARTNLgqNLRG-RKMLVMIDGVSLQSSRSISrhldsIDPFNVDRIEVLSGSTSI-YGAG 146
Cdd:COG4773    83 TTLDDALrnVPGVTVSSYDGGGRDSF--SIRGfSIDNYLRDGLPLGGFGGGQ-----PDTANLERVEVLKGPAGLlYGAG 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 147 ASGGVINIITKKARSeelEFESYVGGTSGfnsSEDFdYKVAQSVSG---GNEKVQARTSVVYTETQGFFDAsgtivtpdi 223
Cdd:COG4773   156 SPGGLVNLVTKRPTA---EPQGEVSLSAG---SWDT-YRATADVGGplnEDGTLRYRLNAAYEDGDSFRDG--------- 219

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 224 sqgslQFNQTVDFLTTVSVDVSETQKLNFLAQYYDSQQDSPYGLYIVGRDFVDVRKGF----ESDREHGTKRMM------ 293
Cdd:COG4773   220 -----VDNRRTLIAPSLDWDLTDDTTLTLGAEYQDDDSTGDRGFLPLDGTLLDLPRSTnlgePWDYYDTETTTLfaeleh 294

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 294 ---------LSASYADEQFLGQQLIAEASYRKEDQTYTPYYQSSGQQiTDVISLKAALAKSFD----KLNIVYGIDAYQD 360
Cdd:COG4773   295 rfnddwslrANARYSDSDRDGRSAYAYGAPDAATGTLTRYASARDGD-SRSDSLDANLNGKFEtgglEHTLLVGADYSRY 373

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 361 KLDSNQALYDSTiannsgNLVNKTYAQV------GRYPGVEVSSVAAFAQVDYAITDDWRVEGGVRYQYmlnkiddfvgY 434
Cdd:COG4773   374 DSDSDSATAGTI------NIYNPVYGNLpepdfdASDTDTTTRQTGLYAQDQISLTDRLSLLLGGRYDW----------Y 437

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 435 NQqkkiaagNGTSADAVPGGETDYSVALFNLGTIYHLNRDSQVWANFSQGFdladpakyygqgnytlvgdhwQLNDSINV 514
Cdd:COG4773   438 ET-------DSTNRLGGSTTSYDDSAFTPRAGLVYDLTPGLSLYASYSESF---------------------EPQSGADN 489

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 515 NQSKMSGIKTNSVELGYRLESGDVNLQ-TAAYYSQSDKNIKYNKSTLLIEEIEDKK-RVYGLEAMLSYWVHDNIQLGASG 592
Cdd:COG4773   490 NGNPLDPETGKQYEAGVKGELFDGRLNaTLAVFDITQKNVATTDPDNPNFYVQVGEvRSRGVELELSGELTPGLNLIAGY 569

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 593 HYVVSEVKGDkgwEDYDAG----YASTSKANAWA----------GWSdADLNIKLQSQTMFDyeDASNNKLNGYTLFDLV 658
Cdd:COG4773   570 TYTDAKITKD---ADALEGkrltNVPRHTASLWTtyrfpsgalkGLG-LGGGVRYVGERYGD--AANTFTLPSYTLVDAG 643

                         730       740       750       760       770       780
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1219744285 659 GSYQLPVG-SLGFGIQNLLDKEYTTAWGQRAQLIYsahyesaaydykGRGRTYTLNYQVKF 718
Cdd:COG4773   644 ARYDLGKNwTLQLNVNNLFDKKYYASSGSRGYVYY------------GAPRNVRLSLSYKF 692
Fiu COG4774
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism];
43-718 9.20e-35

Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism];


Pssm-ID: 443806 [Multi-domain]  Cd Length: 639  Bit Score: 140.78  E-value: 9.20e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285  43 RTPKAISDIPGTVWYIESDKIEQeyRGGKTLGDILASaIPSLDVSSGARTNLGQ-NLRG--RKMLVMIDGVSLQSSRSIs 119
Cdd:COG4774     1 KTDTPLLDTPQSVTVVTRELIED--QGATSLADALRN-VPGVTFGAGEGGNGDSfSIRGfsASGDIYVDGLRDPGQYRR- 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 120 rhldsiDPFNVDRIEVLSGSTS-IYGAGASGGVINIITKKARseeLEFESYVGGTSGfnsseDFDYKVAQSVSGG--NEK 196
Cdd:COG4774    77 ------DTFNLERVEVLKGPASvLYGRGSPGGVINLVTKRPT---DEPFTEVTLTYG-----SDGQRRATLDVNGplGDD 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 197 VQARTSVVYTETQGFFDAsgtivtpdisqgslQFNQTVDFLTTVSVDVSETQKLNFLAQYYDSQQDSPYGL-YIVGRDFV 275
Cdd:COG4774   143 LAYRLNGMYRDSDSYRDG--------------VDNDRWGIAPSLTWRLGDRTRLTLDYEYQDDDRTPDYGVpAVANGRPV 208

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 276 DVRK----GFESDREHG-TKRMMLSASYA-DEQF-LGQQLIAEASYRKEDQTYTPYYQSSG---------QQITDVISLK 339
Cdd:COG4774   209 DVDRstfyGQPDDYSDSeTDSATLRLEHDfNDNWtLRNALRYSDYDRDYRNTYPTGGNATGtvtrsayrrDQDNDTLSNQ 288

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 340 AALAKSFD----KLNIVYGIDAYQDklDSNQALYDSTIANNSGNLVNKTY-------AQVGRYPGVEVSSVAAFAQVDYA 408
Cdd:COG4774   289 TDLTGKFDtggvKHTLLAGVEYSRE--DSDNARYSGGGTAPTVNLYNPVYgapvtgpTLGGADNDSRTDTTGLYLQDTIS 366

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 409 ITDDWRVEGGVRYQYMLNKIDDFvgynqqkkiAAGNGTSadavpggETDYSVALFNLGTIYHLNRDSQVWANFSQGFDla 488
Cdd:COG4774   367 LTDRWSLLAGLRYDRFDTDYTDR---------TTGATTS-------SYDDSAFSPRAGLVYKPTPNLSLYASYSTSFN-- 428

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 489 dPakyyGQGNYTLvgdhwqlndsiNVNQSKMSGIKTNSVELGYRLESGDVNLQ-TAAYYSQSDKNIK-YNKSTLLIEEIE 566
Cdd:COG4774   429 -P----GGGAPSL-----------SNAGQALDPEKSRQYEVGVKWDLLDGRLSlTAALFRIEKTNVRtTDPANPGVYVQT 492

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 567 DKKRVYGLEAMLSYWVHDNIQLGASGHYVVSEVkgDKGWEDYDAGY--ASTSK--ANAWA-------GWSdADLNIKLQS 635
Cdd:COG4774   493 GEQRSRGVELEATGELTPGWSVLAGYTYLDAEI--TKSANAANVGNrlPNVPRhsASLWTtydlplpGLT-LGGGVRYVG 569

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 636 QTmfdYEDASNN-KLNGYTLFDLVGSYQL--PVgSLGFGIQNLLDKEYTTAWGQRAQLIYsahyesaaydykGRGRTYTL 712
Cdd:COG4774   570 SR---YADAANTvKLPSYTRFDAGASYRLnkNL-TLRLNVNNLTDKRYYASAYGSGYVTP------------GAPRTVLL 633


                  ....*.
gi 1219744285 713 NYQVKF 718
Cdd:COG4774   634 SASYRF 639
BtuB COG4206
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism];
37-278 1.14e-27

Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism];


Pssm-ID: 443355 [Multi-domain]  Cd Length: 276  Bit Score: 113.04  E-value: 1.14e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285  37 MVVVSSRTPKAISDIPGTVWYIESDKIEQeyRGGKTLGDILASaIPSLDVSS----GARTNLgqNLRG---RKMLVMIDG 109
Cdd:COG4206     1 VVVTATRLEQSKSDLTGSVTVIDAEELER--SGATSLADALRR-VPGVQVSSsggpGSAASI--SIRGlgsNQTLVLIDG 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 110 VSLQSSRSISRHLDSIDPFNVDRIEVLSGSTS-IYGAGASGGVINIITKKARSeelEFESYVGGTSGFNSSedfdYKVAQ 188
Cdd:COG4206    76 VPLNDPSLGGVDLSLIPPDDIERIEVLKGAASaLYGSDAIGGVINITTKKGKK---GFKGSVSASYGSFGT----RRLSA 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 189 SVSGGNEKVQARTSVVYTETQGFFDASGTIVTPDisqgslQFNQTVdFLTTVSVDVSETQKLNFLAQYYDSQQDSPYGLY 268
Cdd:COG4206   149 SLSGGAGKFSYSLSASYRRSDGYRYNDPDLRNND------GYENTS-LNARLGYKLGDNGSLSLSGGYSDSERGYPGAVG 221

                         250
                  ....*....|
gi 1219744285 269 IVGRDFVDVR 278
Cdd:COG4206   222 SDRNLRLSLS 231
TonB_dep_Rec pfam00593
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
 235-717 1.33e-27

TonB dependent receptor; This model now only covers the conserved part of the barrel structure.


Pssm-ID: 395474 [Multi-domain]  Cd Length: 475  Bit Score: 117.18  E-value: 1.33e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 235 DFLTTVSVDVSETQKLNFLAQYYDSQQDSPYGLYIVGRDFVDVRKGFESDREHGTKRMMLSASY----ADEQFLGQQLIA 310
Cdd:pfam00593   4 LSLDLLGDDTLLTLGYDYSRYTDGLDLGLTLDGYGNDGGYLGDRPLYYGRDYSDTDRKRLSLGYdydlGDGLSWLSTLRL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 311 EASYRKEDQTYTPYYQS--------SGQQITDVISLKAALAKSFD-KLNIVYGIDAYQDKLDSNQalydstIANNSGNLV 381
Cdd:pfam00593  84 GLRYSSLDGDYTSNSSGlsgagdylSDDRLYGLYGLDGDLELSLDlSHDLLLGVELRTAGLDYRR------LDDDAYDPY 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 382 NKTYAQVGRYPGVEVSSVAAFAQVDYAITDDWRVEGGVRYQYMLNKIDDFVGYNQQKKiaagngtsadavpggeTDYSVA 461
Cdd:pfam00593 158 DPANPSSSSYSDTTTDSYGLYLQDNIKLTDRLTLTLGLRYDHYSTDGDDGNGGGDNFS----------------RSYSAF 221

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 462 LFNLGTIYHLNRDSQVWANFSQGFDLADPAKYYGQGNYTLVGdhwqlndSINVNQSKMSGIKTNSVELGYRLESGDVNLQ 541
Cdd:pfam00593 222 SPRLGLVYKPTDNLSLYASYSRGFRAPSLGELYGSGSGGGGG-------AVAGGNPDLKPETSDNYELGLKYDDGRLSLS 294

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 542 TAAYYS------QSDKNIKYNKSTLLIEEIEDKKRVYGLEAMLSYWVHDNIQLGASGHYVVSEVKGDKGWEDYDAGYAST 615
Cdd:pfam00593 295 LALFYIdiknliTSDPDGPGLGGTVYTYTNVGKARIRGVELELSGRLWGLGLSGGGYTYTDADDDADADDTGNPLPNVPR 374

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 616 SKANAWAGWSDADLNIKL-------QSQTMFDYEDASNNKLNGYTLFDLVGSYQLPVG-SLGFGIQNLLDKEYTTawgqr 687
Cdd:pfam00593 375 HTANLGLTYDFPLGGWGArlgaryvGSGERRYGDAANTFKTPGYTLVDLSAGYRLNKNlTLRLGVNNLFDKYYKR----- 449

                         490       500       510
                  ....*....|....*....|....*....|
gi 1219744285 688 aqliYSAHYESAAYDYKGRGRTYTLNYQVK 717
Cdd:pfam00593 450 ----YYSSGGGNLGGYPGPGRTFYLGLSYK 475
TonB-hemin TIGR01785
TonB-dependent heme/hemoglobin receptor family protein; This model represents the ...
 35-718 5.66e-24

TonB-dependent heme/hemoglobin receptor family protein; This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]


Pssm-ID: 273807 [Multi-domain]  Cd Length: 665  Bit Score: 107.48  E-value: 5.66e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285  35 DKMVVVSSRTPKAISDIPGTVWYIESDKIEQeyRGGKTLGDILASaIPSLDVSSGARTNlGQ--NLRGRK---MLVMIDG 109
Cdd:TIGR01785   2 DTVTVTATRTRQVLSEAPASVSVISGEQIES--KQANNLADALNT-VPGVDVTGGGRPP-GQsiNIRGLQdnrVLVVVDG 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 110 VSLQSSRSISRH-LDSIDPFNVDRIEVLSGSTS-IYGAGASGGVINIITKKARSEELEFESYVGGTSGFNSSEDFDYKVA 187
Cdd:TIGR01785  78 ARQNYQRGGAHNgSLFVDPELLKRIEIVKGPSSsLYGSGALGGVVAFRTKDAADLLRPGQLFGGLAKLSYGSNNNSFGGS 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 188 QSVSGGN-EKVQARTSVVYTETQGFFDASGTIVTPDIsqgslqfNQTVDFLTTVSVDVSETQKLNFLAQYYDSQQDSPYG 266
Cdd:TIGR01785 158 VAVAGRLdDNLDALVAATYRDGGNYRNGNKEEATNSA-------YVQKNLLAKLGWQLDDAQRLEFSYFTTEGSLDEAQN 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 267 LYIvGRDFVDVRKGFESDREHGTKRMMLSASYADEQFLGQQLIAEASYRKEDQTYTPYYQSSGQQITDVISLKAALA--- 343
Cdd:TIGR01785 231 SGP-GTEYVLGSSSTLLASSTRDRSATLTYNWTPEDNPWLDATASLYYNRTENDNDRSARGVGREEGYQYTTYGATLqnt 309

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 344 KSFD---KLNIVYGIDAYQDKldsnqalydsTIANNSGNlvNKTYAQVGRYPGVEVSSVAAFAQVDYAITDD-WRVEGGV 419
Cdd:TIGR01785 310 SRFDvasWSTLTYGVDWMKDK----------RRTESFDP--NSVTTIVPNPPSAKEYFFGLFLQDNIPLLDDrLTLSAGL 377

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 420 RYQYMLNKIDDFVGYNQQKKiaagngtsadavpggetDYSVALFNLGTIYHLNRDSQVWANFSQGFDLADPAKYYGQGNY 499
Cdd:TIGR01785 378 RYDHYKLSPKTTADTEAVDR-----------------SYSRWSPSLGLSYKPVDWLTLYASYSQGFRAPSIDELYGTGDH 440

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 500 TLVGDHwqlndSINVNQSKMSGIKTNSVELGYRLESGDVNLQT-------AAYYSQSDKNI-----KYNKSTLLIEEIE- 566
Cdd:TIGR01785 441 PGTPGG-----YTFAPNPNLKPETSKTWELGANLSFDNLLLDNdqlqfkvAYFYNDVKDFIdltigVTDNVTAGMNNITq 515

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 567 ----DKKRVYGLEAMLSYWVhDNIQLGASGHYVVSEVKGDKGWED--------YDAGYAsTSKANAWAGWSDADLNIKLQ 634
Cdd:TIGR01785 516 yvniDGARIRGIEASASYDA-GLWATGLSYGYTIGKDQNTNQWLSnipplklvVTVGYR-FPDRRLDLGAKAAYYERQSE 593

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 635 SQTMFDYEDASNNKLNGYTLFDLVGSYQ---LPVGSLGFGIQNLLDKEYTTAWGqraqliysahyesaaYDYKGRGRTYT 711
Cdd:TIGR01785 594 SPTTEDVAANGLLTTPGYTVVDLYATYQpnaVKGLTVRFGVNNLTDRKYTPAQS---------------VPGAGPGRNFK 658


                  ....*..
gi 1219744285 712 LNYQVKF 718
Cdd:TIGR01785 659 GSVKYQF 665
Plug pfam07715
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently ...
 47-151 6.82e-18

TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors. It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens the channel.


Pssm-ID: 462243 [Multi-domain]  Cd Length: 107  Bit Score: 79.62  E-value: 6.82e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285  47 AISDIPGTVWYIESDKIEQeyRGGKTLGDILASaIPSLDVSSGARTNLGQ-NLRG---RKMLVMIDGVSLQSSRSISRHL 122
Cdd:pfam07715   1 DLRDTPGSVSVVTAEDIED--QGATNLADALRG-VPGVSVSSGGGGGGSSiSIRGfgsNRVLVLVDGVPLNSGGGGSVDL 77

                          90       100       110
                  ....*....|....*....|....*....|
gi 1219744285 123 DSIDPFNVDRIEVLSGSTS-IYGAGASGGV 151
Cdd:pfam07715  78 NSIDPEDIERVEVLKGPASaLYGSGAIGGV 107
PRK13483 PRK13483
ligand-gated channel protein;
9-162 1.37e-12

ligand-gated channel protein;


Pssm-ID: 184080 [Multi-domain]  Cd Length: 660  Bit Score: 70.96  E-value: 1.37e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285   9 PLSTMALAIIAASTALTAQAQETSTNDKMVVVSSRTPKAISDIPGTVWYIESDKIEQEYRggKTLGDILASaIPSLDVSS 88
Cdd:PRK13483    8 VISALCLLPAVFVTHALAQAAPDKTMETVVVTASGYEQQIRDAPASISVITREDLENRFY--RDLTDALLD-VPGVVVTG 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285  89 GA-RTNLgqNLRG---RKMLVMIDGvSLQSSRSISRHLDS-------IDPFN-VDRIEVLSGS-TSIYGAGASGGVINII 155
Cdd:PRK13483   85 GGdRTDI--SLRGmgsQYTLILVDG-KRQSSRETRPNSDGpgveqawTPPLAaIERIEVIRGPmSSLYGSDAIGGVINII 161


                  ....*..
gi 1219744285 156 TKKARSE 162
Cdd:PRK13483  162 TRKVPNE 168
PRK10064 PRK10064
catecholate siderophore receptor CirA; Provisional
 9-158 1.42e-12

catecholate siderophore receptor CirA; Provisional


Pssm-ID: 236646 [Multi-domain]  Cd Length: 663  Bit Score: 71.07  E-value: 1.42e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285   9 PLSTMALAIIAASTALTAQAQETStNDKMVVVSSRTPKAISDIPGTVWYIESDKIEQeyRGGKTLGDILASaIPSLDVSS 88
Cdd:PRK10064    6 PFVRVGLCASAISCAWPVLAVDDD-GETMVVTASAVEQNLKDAPASISVITQEDLQR--KPVQNLKDVLKE-VPGVQLTN 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1219744285  89 GARTNLGQNLRG---RKMLVMIDGVSLQSSRSISRH----LDSIDPFNVDRIEVLSGS-TSIYGAGASGGVINIITKK 158
Cdd:PRK10064   82 EGDNRKGVSIRGldsSYTLILIDGKRVNSRNAVFRHndfdLNWIPVDAIERIEVVRGPmSSLYGSDALGGVVNIITKK 159
btuB PRK10641
TonB-dependent vitamin B12 receptor BtuB;
22-159 1.52e-10

TonB-dependent vitamin B12 receptor BtuB;


Pssm-ID: 236730 [Multi-domain]  Cd Length: 614  Bit Score: 64.24  E-value: 1.52e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285  22 TALTAQAQETStNDKMVVVSSRTPKAISDI--PGTVwyIESDKIE--QeyrgGKTLGDILaSAIPSLDVS-SGArtnLGQ 96
Cdd:PRK10641   14 TAFSGWAQDTS-PDTLVVTANRFQQPVSTVlaPTTV--VTRDDIDrwQ----SKSVNDVL-RRLPGVDIAqNGG---LGQ 82

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1219744285  97 N----LRG---RKMLVMIDGVSL-QSSRSISRHLDSIDPFNVDRIEVLSGSTS-IYGAGASGGVINIITKKA 159
Cdd:PRK10641   83 LsslfIRGtnsSHVLVLIDGVRLnQAGISGSADLSQIPISLVQRIEYIRGPRSaVYGSDAIGGVVNIITTRD 154
PRK13528 PRK13528
outer membrane receptor FepA; Provisional
 9-158 5.53e-10

outer membrane receptor FepA; Provisional


Pssm-ID: 237413 [Multi-domain]  Cd Length: 727  Bit Score: 62.85  E-value: 5.53e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285   9 PLSTMALAIIAASTALTAQAQETSTNDKMVVVSSRTPKAISDIPGtVWYIESDKIEqeyrggKT-----LGDILASaIPS 83
Cdd:PRK13528    8 ILWLLTVLLVGLNSPVSAAESSDDDNGETMVVEATAEQELKQQPG-VSIITAEDIK------KRppvndLSDIIRK-MPG 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285  84 LDV----SSGARTNLGQ-NLRG---RKMLVMIDGVSLQSSRSI---------SRHlDS--IDPFNVDRIEVLSG-STSIY 143
Cdd:PRK13528   80 VNLtgnsASGTRGNNRQiDIRGmgpENTLILIDGVPVTSRNSVryswrgerdTRG-DTnwVPPEMVERIEVIRGpAAARY 158

                         170
                  ....*....|....*
gi 1219744285 144 GAGASGGVINIITKK 158
Cdd:PRK13528  159 GSGAAGGVVNIITKR 173
PRK13513 PRK13513
ligand-gated channel protein;
15-162 2.30e-09

ligand-gated channel protein;


Pssm-ID: 184104 [Multi-domain]  Cd Length: 659  Bit Score: 60.55  E-value: 2.30e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285  15 LAIIAASTALTAQAQETSTNDKMVVVSSRTPKAISDIPGTVWYIESDKIEQE-YRggkTLGDILASaIPSLDVSSGARTN 93
Cdd:PRK13513   16 AAAISSQAYAAEKTNTATPTDTMVVTASGFQQRIQDAPASISVVTREQLENKaYR---DVTDALKD-VPGVVVTGGGSTS 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285  94 lGQNLRG---RKMLVMIDG--VSLQSSRSISRH----------LDSIDpfnvdRIEVLSGS-TSIYGAGASGGVINIITK 157
Cdd:PRK13513   92 -DISIRGmaaKYTLILVDGkrVDTRSTRPNSDGsgieqgwlppLAAIE-----RIEVVRGPmSSLYGSDAMGGVINIITR 165


                  ....*
gi 1219744285 158 KARSE 162
Cdd:PRK13513  166 KVQKE 170
PRK09840 PRK09840
catecholate siderophore receptor Fiu; Provisional
 2-683 6.14e-09

catecholate siderophore receptor Fiu; Provisional


Pssm-ID: 182105 [Multi-domain]  Cd Length: 761  Bit Score: 59.43  E-value: 6.14e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285   2 TASKGKFP-LSTMALAIIAASTALTAQAQETSTN-DKMVVVSSRTPKAIS--------------DIPGTVWYIESDKIEQ 65
Cdd:PRK09840    6 NFPARQFHsLAFFAGLCIGITPVAQALAAEGQTNaDDTLVVEASTPSLYApdqsadpkfsqplaDTTQTITVISEQVIKD 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285  66 EyrGGKTLGDIL--ASAIPSLDVSSGARTNLGQN--LRG--RKMLVMIDGVslQSSRSISRhldsiDPFNVDRIEVLSG- 138
Cdd:PRK09840   86 Q--GATNLTEALrnVPGVGTFFAGENGNTTTGDAiyMRGfdTSNSIYVDGI--RDIGSISR-----DTFNTEQVEVIKGp 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 139 STSIYGAGASGGVINIITKKAR-------SEELEFESYVGGTSGFNSSEDFDYKVAQSVSGGNEKVQARTSV-------- 203
Cdd:PRK09840  157 SGTDYGRSAPTGSINMISKQPRndsgidaSASIGSAWFRRGTLDVNQVIGDTTAVRLNVMGEKTHDAGRDKVknerygva 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 204 ------VYTETQGFFDAS------------GTIVTPDISQGSlqfnQTVDFLTTVS-VDVSetqklNFLAQYYDSQQdsp 264
Cdd:PRK09840  237 psvafgLGTANRLYLNYLhvtqnntpdggiPTIGLPGYSAPS----AGRAALNHAGkVDTH-----NFYGTDSDYDD--- 304

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 265 yglyiVGRDFVDVRkgFESDREHGTK-RMMLSASYADEQFLGQQLIAEASY-----RKEDQTYT-----PYYQSSGQQIT 333
Cdd:PRK09840  305 -----STTDTATMR--FEHDINDNTTlRNTTRWSRVKQDYLLTAIMGGASNittptPSDVNTWTwsrtaNTKDVSNKILT 377

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 334 DVISLKAALAKSFDKLNIVYGIDAYQDKLD----SNQALYDSTIANNSGNLVNKTYAQVGRYPGVEVSSVAAFAQVDYAI 409
Cdd:PRK09840  378 NQTNLTSTFYTGSIGHDVSTGVEFTRETQTnygvNPVTLPAVNLYHPDSSIHPGGLTRNGANANGQTDTFAIYAFDTLQL 457

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 410 TDDWRVEGGVRYQYMLNKIDDF-VGYNQQKKIAAGNGTSADAVPGGETDYSVA--LFN--LGTIYHLNRDSQVWANF--- 481
Cdd:PRK09840  458 TRDWELNGGIRLDNYHTEYDSAtACGGSGRGAITCPAGVAKGSPVTTVDTAKSgnLVNwkAGALYKLTENGNVYINYavs 537

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 482 -----SQGFDLADPAKyygqGNytlvgdhwqlndsiNVNQSKMSGIKTNSVELGYRLESGDVNLQ-TAAYYSQSDKNiky 555
Cdd:PRK09840  538 qqppgGSNFALAQSGS----GN--------------SANRTDFKPQKANTSEIGTKWQVLDKRLLlTAALFRTDIEN--- 596

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 556 nkstllieEIED----------KKRVYGLEAMLSYWVHDNIQLGASGHYVVSEVK-GDKGWEDYDAGYASTSKaNAWAGW 624
Cdd:PRK09840  597 --------EVEQnddgtysqygKKRVEGYELSVAGNITPAWQVIAGYTQQKATVKnGKDVAQDGSSSLPYTPE-HAFTLW 667

                         730       740       750       760       770       780       790
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 625 SDADLNIKLQSQTMFDYEDA----------SNNKLNGYTLFDLVGSYQLPVG-SLGFGIQNLLDKEYTTA 683
Cdd:PRK09840  668 SQYQATDDLSVGGGARYIGSmhrgsdgavgTPAFTEGYWVADAKLGYRVNRNlDLQLNVYNLFDTDYVAS 737
PRK13484 PRK13484
IreA family TonB-dependent siderophore receptor;
15-173 1.63e-08

IreA family TonB-dependent siderophore receptor;


Pssm-ID: 139605 [Multi-domain]  Cd Length: 682  Bit Score: 58.09  E-value: 1.63e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285  15 LAIIAASTALTAQAQETSTNDKMVVVSSRTPKAISDIPGTVWYIESDKIEQeyrggKTLGDiLASAIPSLDvssGARTNL 94
Cdd:PRK13484   11 IAVMCSAVISSGYASSDKKEDTLVVTASGFTQQLRNAPASVSVITSEQLQK-----KPVSD-LVDAVKDVE---GISITG 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285  95 GQN--------LRGRKMLVMIDGvSLQSSRSiSRHLDS-------IDPFN-VDRIEVLSGS-TSIYGAGASGGVINIITK 157
Cdd:PRK13484   82 GNEkpdisirgLSGDYTLILVDG-RRQSGRE-SRPNGSggfeagfIPPVEaIERIEVIRGPmSSLYGSDAIGGVINIITK 159

                         170
                  ....*....|....*.
gi 1219744285 158 KARSEELEFESYVGGT 173
Cdd:PRK13484  160 PVNNQTWDGVLGLGGI 175
PRK13486 PRK13486
TonB-dependent receptor;
9-158 3.05e-08

TonB-dependent receptor;


Pssm-ID: 139606 [Multi-domain]  Cd Length: 696  Bit Score: 56.95  E-value: 3.05e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285   9 PLSTMALAIIAASTALTAQAQetstnDKMVVVSSRTPKAISDIPGTVWYIEsdkiEQEYRGGK--TLGDILASaIPSLDV 86
Cdd:PRK13486    5 TLASVVIPCLGFSASSIAAAE-----DVMIVSASGYEKKLTNAAASVSVIS----QEELQSSQyhDLAEALRS-VEGVDV 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285  87 SSGARTNLGQNLRGRKM-----LVMIDGVSLQSSRSISRHLDS------IDPFN-VDRIEVLSGSTS-IYGAGASGGVIN 153
Cdd:PRK13486   75 ESGTGKTGGLEISIRGMpasytLILIDGVRQGGSSDVTPNGFSamntgfMPPLAaIERIEVIRGPMStLYGSDAMGGVVN 154


                  ....*
gi 1219744285 154 IITKK 158
Cdd:PRK13486  155 IITRK 159
PRK13524 PRK13524
FepA family TonB-dependent siderophore receptor;
9-162 6.66e-08

FepA family TonB-dependent siderophore receptor;


Pssm-ID: 237410 [Multi-domain]  Cd Length: 744  Bit Score: 56.19  E-value: 6.66e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285   9 PLSTMALAIIAASTALTAQAQETSTNDKMVVVSSRTPKaisDIPGtVWYIESDKIEQeyrggktlgdilasAIPSLDVSS 88
Cdd:PRK13524   13 NLGIYGVAQAAEAEDAKTDDTPASHEDTIVVTAAEQNL---QAPG-VSTITAEDIRK--------------RPPANDVSE 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285  89 GARTNLGQNLRG---------------RKM-----LVMIDGVSLQSSRSI---------SRHlDS--IDPFNVDRIEVLS 137
Cdd:PRK13524   75 IIRTMPGVNLTGnstsgqrgnnrqidiRGMgpentLILIDGKPVSSRNSVrygwrgerdTRG-DTnwVPPEMIERIEVLR 153

                         170       180
                  ....*....|....*....|....*.
gi 1219744285 138 G-STSIYGAGASGGVINIITKKARSE 162
Cdd:PRK13524  154 GpAAARYGNGAAGGVVNIITKKPTGE 179
PRK14050 PRK14050
TonB-dependent siderophore receptor;
125-194 2.26e-05

TonB-dependent siderophore receptor;


Pssm-ID: 237595 [Multi-domain]  Cd Length: 728  Bit Score: 47.87  E-value: 2.26e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 125 IDPFNVDRIEVLSGSTSI-YGAGASGGVINIITKKARSE-----ELEFESYVGGTSGF------NSSEDFDYKVAQSVSG 192
Cdd:PRK14050  153 IDPFMLERVEVLKGPASVlYGGSNPGGIVNMVSKRPLDEplyytEIGINSYGNAFTGFdvgdklSDDGTVRYRVTGKVAG 232


                  ..
gi 1219744285 193 GN 194
Cdd:PRK14050  233 GD 234
OMP_RagA_SusC TIGR04056
TonB-linked outer membrane protein, SusC/RagA family; This model describes a distinctive clade ...
 104-161 1.80e-04

TonB-linked outer membrane protein, SusC/RagA family; This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate]


Pssm-ID: 274948 [Multi-domain]  Cd Length: 981  Bit Score: 44.89  E-value: 1.80e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219744285 104 LVMIDGVSlqssrsISRHLDSIDPFNVDRIEVLSG--STSIYGAGASGGVINIITKKARS 161
Cdd:TIGR04056 155 LYVIDGVP------RDNGLSDLNPEDIESISVLKDasATAIYGSRGANGVILITTKRGKE 208
PRK10044 PRK10044
ferrichrome outer membrane transporter; Provisional
 124-182 3.40e-03

ferrichrome outer membrane transporter; Provisional


Pssm-ID: 236643 [Multi-domain]  Cd Length: 727  Bit Score: 40.90  E-value: 3.40e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1219744285 124 SIDPFNVDRIEVLSGSTSI-YGAGASGGVINIITKKARSEEL-EFESYVGGTSGFNSSEDF 182
Cdd:PRK10044  153 VIDPYMLERAELMRGPVSVlYGKSNPGGLLNMVSKRPTTEPLkEVQFKMGTDNLFQTGFDF 213
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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