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Conserved domains on  [gi|1227444771|gb|ASR36000|]
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hypothetical protein BAY61_14430 [Prauserella marina]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF6194 pfam19694
Family of unknown function (DUF6194); This entry represents a member of a biosynthetic gene ...
 8-159 2.50e-60

Family of unknown function (DUF6194); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001597) is described by MIBiG as an example of the following biosynthetic class, polyketide. It includes a member from the fluvirucin B2 biosynthetic gene cluster from Actinomadura fulva subsp. indica. This family appears to be predominantly found in bacteria.


:

Pssm-ID: 466148  Cd Length: 156  Bit Score: 183.97  E-value: 2.50e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227444771   8 PDAARRYIAaTLPGV-VAENGEGD-----SAGDTFFSFCPDGVLrKDRWTPFATIVTGD-TYDSVSGLSEEGAYRLNIGL 80
Cdd:pfam19694   3 PDEIIAYIR-GLDGVlVLRPGPGDgspeiAWGDTFFFYAPDGVL-PTRGQPFATIVTKDyPGDEASRLDRPGVFRLNIGV 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1227444771  81 PKAVYTGRFGAPPAERDAEGVLdtgWDYSVRDAVMPHPHYASQYWVCVVNPGPETWADIRELLDEAYRFAERKHANTVA 159
Cdd:pfam19694  81 GKATFRELFGEPPARPAAGGVV---HDFTALDTLMPHPVYGAQGWVCVVNPGPRTFATVRPLLREAHALARRRHERRAA 156
 
Name Accession Description Interval E-value
DUF6194 pfam19694
Family of unknown function (DUF6194); This entry represents a member of a biosynthetic gene ...
 8-159 2.50e-60

Family of unknown function (DUF6194); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001597) is described by MIBiG as an example of the following biosynthetic class, polyketide. It includes a member from the fluvirucin B2 biosynthetic gene cluster from Actinomadura fulva subsp. indica. This family appears to be predominantly found in bacteria.


Pssm-ID: 466148  Cd Length: 156  Bit Score: 183.97  E-value: 2.50e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227444771   8 PDAARRYIAaTLPGV-VAENGEGD-----SAGDTFFSFCPDGVLrKDRWTPFATIVTGD-TYDSVSGLSEEGAYRLNIGL 80
Cdd:pfam19694   3 PDEIIAYIR-GLDGVlVLRPGPGDgspeiAWGDTFFFYAPDGVL-PTRGQPFATIVTKDyPGDEASRLDRPGVFRLNIGV 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1227444771  81 PKAVYTGRFGAPPAERDAEGVLdtgWDYSVRDAVMPHPHYASQYWVCVVNPGPETWADIRELLDEAYRFAERKHANTVA 159
Cdd:pfam19694  81 GKATFRELFGEPPARPAAGGVV---HDFTALDTLMPHPVYGAQGWVCVVNPGPRTFATVRPLLREAHALARRRHERRAA 156
MmcQ COG2315
Predicted DNA-binding protein with #double-wing# structural motif, MmcQ/YjbR family ...
 112-148 9.63e-03

Predicted DNA-binding protein with #double-wing# structural motif, MmcQ/YjbR family [Transcription];


Pssm-ID: 441889  Cd Length: 115  Bit Score: 34.39  E-value: 9.63e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1227444771 112 DAVMPHPHYASQYWVCVVNPGPETWADIRELLDEAYR 148
Cdd:COG2315    65 PGITPGYHMNKKHWNTVYLDGSLPDDELRELIDHSYD 101
 
Name Accession Description Interval E-value
DUF6194 pfam19694
Family of unknown function (DUF6194); This entry represents a member of a biosynthetic gene ...
 8-159 2.50e-60

Family of unknown function (DUF6194); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001597) is described by MIBiG as an example of the following biosynthetic class, polyketide. It includes a member from the fluvirucin B2 biosynthetic gene cluster from Actinomadura fulva subsp. indica. This family appears to be predominantly found in bacteria.


Pssm-ID: 466148  Cd Length: 156  Bit Score: 183.97  E-value: 2.50e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227444771   8 PDAARRYIAaTLPGV-VAENGEGD-----SAGDTFFSFCPDGVLrKDRWTPFATIVTGD-TYDSVSGLSEEGAYRLNIGL 80
Cdd:pfam19694   3 PDEIIAYIR-GLDGVlVLRPGPGDgspeiAWGDTFFFYAPDGVL-PTRGQPFATIVTKDyPGDEASRLDRPGVFRLNIGV 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1227444771  81 PKAVYTGRFGAPPAERDAEGVLdtgWDYSVRDAVMPHPHYASQYWVCVVNPGPETWADIRELLDEAYRFAERKHANTVA 159
Cdd:pfam19694  81 GKATFRELFGEPPARPAAGGVV---HDFTALDTLMPHPVYGAQGWVCVVNPGPRTFATVRPLLREAHALARRRHERRAA 156
MmcQ COG2315
Predicted DNA-binding protein with #double-wing# structural motif, MmcQ/YjbR family ...
 112-148 9.63e-03

Predicted DNA-binding protein with #double-wing# structural motif, MmcQ/YjbR family [Transcription];


Pssm-ID: 441889  Cd Length: 115  Bit Score: 34.39  E-value: 9.63e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1227444771 112 DAVMPHPHYASQYWVCVVNPGPETWADIRELLDEAYR 148
Cdd:COG2315    65 PGITPGYHMNKKHWNTVYLDGSLPDDELRELIDHSYD 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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