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Conserved domains on  [gi|1278335561|gb|ATV99772|]
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50S ribosomal protein L32 [Synechococcus sp. A15-127]

Protein Classification

bL32 family ribosomal protein( domain architecture ID 917)

bL32 family ribosomal protein such as Drosophila melanogaster mitochondrial 39S ribosomal protein L32, a component of the mitochondrial large ribosomal subunit, and bacterial 50S ribosomal protein L32

Gene Ontology:  GO:0003735
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L32p super family cl09115
Ribosomal L32p protein family;
1-52 1.22e-07

Ribosomal L32p protein family;


The actual alignment was detected with superfamily member CHL00152:

Pssm-ID: 471853  Cd Length: 53  Bit Score: 42.71  E-value: 1.22e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 1278335561  1 MAVPKKKTSKAKRNQRHATWKAKAAVAAQRAMSIGKSVLSGRAQGFVYPVRD 52
Cdd:CHL00152   1 MAVPKKRTSKSKKRIRKNIWKRKAYKAALKAFSLAKSLSTGKSKSFFYQQTN 52
 
Name Accession Description Interval E-value
rpl32 CHL00152
ribosomal protein L32; Validated
 1-52 1.22e-07

ribosomal protein L32; Validated


Pssm-ID: 214377  Cd Length: 53  Bit Score: 42.71  E-value: 1.22e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 1278335561  1 MAVPKKKTSKAKRNQRHATWKAKAAVAAQRAMSIGKSVLSGRAQGFVYPVRD 52
Cdd:CHL00152   1 MAVPKKRTSKSKKRIRKNIWKRKAYKAALKAFSLAKSLSTGKSKSFFYQQTN 52
Ribosomal_L32p pfam01783
Ribosomal L32p protein family;
2-17 1.82e-03

Ribosomal L32p protein family;


Pssm-ID: 426430  Cd Length: 56  Bit Score: 32.18  E-value: 1.82e-03
                         10
                 ....*....|....*.
gi 1278335561  2 AVPKKKTSKAKRNQRH 17
Cdd:pfam01783  1 AVPKRKTSKSRRRKRR 16
RpmF COG0333
Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L32 ...
 2-17 2.61e-03

Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L32 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440102  Cd Length: 56  Bit Score: 32.00  E-value: 2.61e-03
                         10
                 ....*....|....*.
gi 1278335561  2 AVPKKKTSKAKRNQRH 17
Cdd:COG0333    1 AVPKRKTSKSRRRKRR 16
 
Name Accession Description Interval E-value
rpl32 CHL00152
ribosomal protein L32; Validated
 1-52 1.22e-07

ribosomal protein L32; Validated


Pssm-ID: 214377  Cd Length: 53  Bit Score: 42.71  E-value: 1.22e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 1278335561  1 MAVPKKKTSKAKRNQRHATWKAKAAVAAQRAMSIGKSVLSGRAQGFVYPVRD 52
Cdd:CHL00152   1 MAVPKKRTSKSKKRIRKNIWKRKAYKAALKAFSLAKSLSTGKSKSFFYQQTN 52
Ribosomal_L32p pfam01783
Ribosomal L32p protein family;
2-17 1.82e-03

Ribosomal L32p protein family;


Pssm-ID: 426430  Cd Length: 56  Bit Score: 32.18  E-value: 1.82e-03
                         10
                 ....*....|....*.
gi 1278335561  2 AVPKKKTSKAKRNQRH 17
Cdd:pfam01783  1 AVPKRKTSKSRRRKRR 16
RpmF COG0333
Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L32 ...
 2-17 2.61e-03

Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L32 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440102  Cd Length: 56  Bit Score: 32.00  E-value: 2.61e-03
                         10
                 ....*....|....*.
gi 1278335561  2 AVPKKKTSKAKRNQRH 17
Cdd:COG0333    1 AVPKRKTSKSRRRKRR 16
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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