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Conserved domains on  [gi|1314858937|gb|AUG15751|]
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heat-shock protein HspQ [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

heat shock protein HspQ( domain architecture ID 10014588)

heat shock protein HspQ is involved in the degradation of certain denaturated proteins, including DnaA, during heat shock stress

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK14129 PRK14129
heat shock protein HspQ; Provisional
1-105 4.09e-79

heat shock protein HspQ; Provisional


:

Pssm-ID: 184526  Cd Length: 105  Bit Score: 226.90  E-value: 4.09e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1314858937   1 MIASKFGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELRAAPWYHVVMEDDNGLPVHTYLAEAQLSSELQDE 80
Cdd:PRK14129    1 MIASKFGIGQQVRHSLLGYLGVVVDIDPEYSLEEPSPDELAVNDELRAAPWYHVVMEDDDGQPVHTYLAEAQLSSELQDE 80
                          90       100
                  ....*....|....*....|....*
gi 1314858937  81 HPEQPSMDELAQTIRKQLQAPRLRN 105
Cdd:PRK14129   81 HPEQPSMDELAESIRKQLQAPRLRN 105
 
Name Accession Description Interval E-value
PRK14129 PRK14129
heat shock protein HspQ; Provisional
1-105 4.09e-79

heat shock protein HspQ; Provisional


Pssm-ID: 184526  Cd Length: 105  Bit Score: 226.90  E-value: 4.09e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1314858937   1 MIASKFGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELRAAPWYHVVMEDDNGLPVHTYLAEAQLSSELQDE 80
Cdd:PRK14129    1 MIASKFGIGQQVRHSLLGYLGVVVDIDPEYSLEEPSPDELAVNDELRAAPWYHVVMEDDDGQPVHTYLAEAQLSSELQDE 80
                          90       100
                  ....*....|....*....|....*
gi 1314858937  81 HPEQPSMDELAQTIRKQLQAPRLRN 105
Cdd:PRK14129   81 HPEQPSMDELAESIRKQLQAPRLRN 105
HspQ COG3785
Heat shock protein HspQ [Posttranslational modification, protein turnover, chaperones];
1-104 1.54e-52

Heat shock protein HspQ [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442999  Cd Length: 107  Bit Score: 159.95  E-value: 1.54e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1314858937   1 MIASKFGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELRAAPWYHVVMEDDNGlPVHTYLAEAQLSSELQDE 80
Cdd:COG3785     3 MIAAKFGIGQVVRHRLFGFRGVIFDVDPEFSNTEEWYEAIPEDRPLKDQPWYHLLAENEES-PYHAYVSEQNLVPDESGE 81
                          90       100
                  ....*....|....*....|....
gi 1314858937  81 HPEQPSMDELAQTIRKQLQAPRLR 104
Cdd:COG3785    82 PVEHPQLDELFESIRDGLYAPRLR 105
yccV TIGR02097
hemimethylated DNA binding domain; This model describes the small protein from E. coli YccV ...
3-102 4.40e-46

hemimethylated DNA binding domain; This model describes the small protein from E. coli YccV and its homologs in other Proteobacteria. YccV is now described as a hemimethylated DNA binding protein. The model also describes a domain in longer eukaryotic proteins.


Pssm-ID: 131152  Cd Length: 101  Bit Score: 143.28  E-value: 4.40e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1314858937   3 ASKFGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVN-DELRAAPWYHVVMEDDNGLPVHTYLAEAQLSSELQDEH 81
Cdd:TIGR02097   1 AAKFRIGQVVRHKLFGYRGVVIDVDPEYSNTEEWLDAIPVEiRPLRDQPFYHVLAEDDEGLPYVAYVAEQNLLYDDSDEP 80
                          90       100
                  ....*....|....*....|.
gi 1314858937  82 PEQPSMDELAQTIRKQLQAPR 102
Cdd:TIGR02097  81 IEHPQVDELFDGFDEGLQKPR 101
YccV-like smart00992
Hemimethylated DNA-binding protein YccV like; YccV is a hemimethylated DNA binding protein ...
4-100 2.17e-32

Hemimethylated DNA-binding protein YccV like; YccV is a hemimethylated DNA binding protein which has been shown to regulate dnaA gene expression. The structure of one of the hypothetical proteins in this family has been solved and it forms a beta sheet structure with a terminating alpha helix.


Pssm-ID: 214961  Cd Length: 98  Bit Score: 108.86  E-value: 2.17e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1314858937    4 SKFGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDEL-RAAPWYHVVMEDDnGLPVHTYLAEAQLSSELQDEHP 82
Cdd:smart00992   2 AKFRIGQVVRHKLFGYRGVVFDWDPEFANTEEWYDEIPEDSRPpRDQPFYHVLVEND-DSSYVAYVSEQNLEPDTSGEPI 80
                           90
                   ....*....|....*...
gi 1314858937   83 EQPSMDELAQTIRKQLQA 100
Cdd:smart00992  81 DHPLLDELFDEFDGGRYV 98
YccV-like pfam08755
Hemimethylated DNA-binding protein YccV like; YccV is a hemimethylated DNA binding protein ...
4-97 2.80e-29

Hemimethylated DNA-binding protein YccV like; YccV is a hemimethylated DNA binding protein which has been shown to regulate dnaA gene expression. The structure of one of the hypothetical proteins in this family has been solved and it forms a beta sheet structure with a terminating alpha helix.


Pssm-ID: 430193  Cd Length: 96  Bit Score: 100.75  E-value: 2.80e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1314858937   4 SKFGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELRAAPWYHVVMEDDNGLPVHT-YLAEAQLSSELQDEHP 82
Cdd:pfam08755   1 VKFRIGQVVRHRRYGYRGVIVGWDPECAASEEWIEQMGVDSLGRDQPFYHVLVDNEDGSYVSVrYVAEENLEPDESGEPI 80
                          90
                  ....*....|....*
gi 1314858937  83 EQPSMDELAQTIRKQ 97
Cdd:pfam08755  81 DHPEIGKYFKRFDGG 95
 
Name Accession Description Interval E-value
PRK14129 PRK14129
heat shock protein HspQ; Provisional
1-105 4.09e-79

heat shock protein HspQ; Provisional


Pssm-ID: 184526  Cd Length: 105  Bit Score: 226.90  E-value: 4.09e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1314858937   1 MIASKFGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELRAAPWYHVVMEDDNGLPVHTYLAEAQLSSELQDE 80
Cdd:PRK14129    1 MIASKFGIGQQVRHSLLGYLGVVVDIDPEYSLEEPSPDELAVNDELRAAPWYHVVMEDDDGQPVHTYLAEAQLSSELQDE 80
                          90       100
                  ....*....|....*....|....*
gi 1314858937  81 HPEQPSMDELAQTIRKQLQAPRLRN 105
Cdd:PRK14129   81 HPEQPSMDELAESIRKQLQAPRLRN 105
HspQ COG3785
Heat shock protein HspQ [Posttranslational modification, protein turnover, chaperones];
1-104 1.54e-52

Heat shock protein HspQ [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442999  Cd Length: 107  Bit Score: 159.95  E-value: 1.54e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1314858937   1 MIASKFGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELRAAPWYHVVMEDDNGlPVHTYLAEAQLSSELQDE 80
Cdd:COG3785     3 MIAAKFGIGQVVRHRLFGFRGVIFDVDPEFSNTEEWYEAIPEDRPLKDQPWYHLLAENEES-PYHAYVSEQNLVPDESGE 81
                          90       100
                  ....*....|....*....|....
gi 1314858937  81 HPEQPSMDELAQTIRKQLQAPRLR 104
Cdd:COG3785    82 PVEHPQLDELFESIRDGLYAPRLR 105
yccV TIGR02097
hemimethylated DNA binding domain; This model describes the small protein from E. coli YccV ...
3-102 4.40e-46

hemimethylated DNA binding domain; This model describes the small protein from E. coli YccV and its homologs in other Proteobacteria. YccV is now described as a hemimethylated DNA binding protein. The model also describes a domain in longer eukaryotic proteins.


Pssm-ID: 131152  Cd Length: 101  Bit Score: 143.28  E-value: 4.40e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1314858937   3 ASKFGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVN-DELRAAPWYHVVMEDDNGLPVHTYLAEAQLSSELQDEH 81
Cdd:TIGR02097   1 AAKFRIGQVVRHKLFGYRGVVIDVDPEYSNTEEWLDAIPVEiRPLRDQPFYHVLAEDDEGLPYVAYVAEQNLLYDDSDEP 80
                          90       100
                  ....*....|....*....|.
gi 1314858937  82 PEQPSMDELAQTIRKQLQAPR 102
Cdd:TIGR02097  81 IEHPQVDELFDGFDEGLQKPR 101
YccV-like smart00992
Hemimethylated DNA-binding protein YccV like; YccV is a hemimethylated DNA binding protein ...
4-100 2.17e-32

Hemimethylated DNA-binding protein YccV like; YccV is a hemimethylated DNA binding protein which has been shown to regulate dnaA gene expression. The structure of one of the hypothetical proteins in this family has been solved and it forms a beta sheet structure with a terminating alpha helix.


Pssm-ID: 214961  Cd Length: 98  Bit Score: 108.86  E-value: 2.17e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1314858937    4 SKFGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDEL-RAAPWYHVVMEDDnGLPVHTYLAEAQLSSELQDEHP 82
Cdd:smart00992   2 AKFRIGQVVRHKLFGYRGVVFDWDPEFANTEEWYDEIPEDSRPpRDQPFYHVLVEND-DSSYVAYVSEQNLEPDTSGEPI 80
                           90
                   ....*....|....*...
gi 1314858937   83 EQPSMDELAQTIRKQLQA 100
Cdd:smart00992  81 DHPLLDELFDEFDGGRYV 98
YccV-like pfam08755
Hemimethylated DNA-binding protein YccV like; YccV is a hemimethylated DNA binding protein ...
4-97 2.80e-29

Hemimethylated DNA-binding protein YccV like; YccV is a hemimethylated DNA binding protein which has been shown to regulate dnaA gene expression. The structure of one of the hypothetical proteins in this family has been solved and it forms a beta sheet structure with a terminating alpha helix.


Pssm-ID: 430193  Cd Length: 96  Bit Score: 100.75  E-value: 2.80e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1314858937   4 SKFGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELRAAPWYHVVMEDDNGLPVHT-YLAEAQLSSELQDEHP 82
Cdd:pfam08755   1 VKFRIGQVVRHRRYGYRGVIVGWDPECAASEEWIEQMGVDSLGRDQPFYHVLVDNEDGSYVSVrYVAEENLEPDESGEPI 80
                          90
                  ....*....|....*
gi 1314858937  83 EQPSMDELAQTIRKQ 97
Cdd:pfam08755  81 DHPEIGKYFKRFDGG 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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