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Conserved domains on  [gi|1314858973|gb|AUG15787|]
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hypothetical protein CXP41_05565 [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

YccJ family protein( domain architecture ID 10013447)

YccJ family protein similar to Escherichia coli uncharacterized protein YccJ

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10174 PRK10174
hypothetical protein; Provisional
 1-75 5.87e-46

hypothetical protein; Provisional


:

Pssm-ID: 182285  Cd Length: 75  Bit Score: 141.18  E-value: 5.87e-46
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1314858973  1 MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV 75
Cdd:PRK10174   1 MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKLAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV 75
 
Name Accession Description Interval E-value
PRK10174 PRK10174
hypothetical protein; Provisional
 1-75 5.87e-46

hypothetical protein; Provisional


Pssm-ID: 182285  Cd Length: 75  Bit Score: 141.18  E-value: 5.87e-46
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1314858973  1 MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV 75
Cdd:PRK10174   1 MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKLAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV 75
YccJ pfam13993
YccJ-like protein; The YccJ-like family of proteins includes the E. coli YccJ protein which is ...
 9-75 3.03e-34

YccJ-like protein; The YccJ-like family of proteins includes the E. coli YccJ protein which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 80 amino acids in length.


Pssm-ID: 433632  Cd Length: 67  Bit Score: 111.15  E-value: 3.03e-34
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1314858973  9 HHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV 75
Cdd:pfam13993  1 HHVGEWASLRHTSPEIAEAIFEVANYDERLAEKIWEEGSDEVLPIAFAKTDKDVLFWDEETVERKNV 67
 
Name Accession Description Interval E-value
PRK10174 PRK10174
hypothetical protein; Provisional
 1-75 5.87e-46

hypothetical protein; Provisional


Pssm-ID: 182285  Cd Length: 75  Bit Score: 141.18  E-value: 5.87e-46
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1314858973  1 MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV 75
Cdd:PRK10174   1 MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKLAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV 75
YccJ pfam13993
YccJ-like protein; The YccJ-like family of proteins includes the E. coli YccJ protein which is ...
 9-75 3.03e-34

YccJ-like protein; The YccJ-like family of proteins includes the E. coli YccJ protein which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 80 amino acids in length.


Pssm-ID: 433632  Cd Length: 67  Bit Score: 111.15  E-value: 3.03e-34
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1314858973  9 HHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV 75
Cdd:pfam13993  1 HHVGEWASLRHTSPEIAEAIFEVANYDERLAEKIWEEGSDEVLPIAFAKTDKDVLFWDEETVERKNV 67
aspS PRK00476
aspartyl-tRNA synthetase; Validated
 16-41 3.80e-03

aspartyl-tRNA synthetase; Validated


Pssm-ID: 234775 [Multi-domain]  Cd Length: 588  Bit Score: 33.89  E-value: 3.80e-03
                          10        20
                  ....*....|....*....|....*.
gi 1314858973  16 SLRNTSPEIAEAIFEVAGYDEKMAEK 41
Cdd:PRK00476  488 SIRIHRPEIQEKVFEILGISEEEAEE 513
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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