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Conserved domains on  [gi|1336546994|gb|AUV76259|]
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hypothetical protein C2843_02930 [Helicobacter pylori]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RHH_7 super family cl25104
Transcriptional regulator, RHH-like, CopG; RHH_7 is a ribbon-helix-helix protein family ...
 9-65 7.06e-19

Transcriptional regulator, RHH-like, CopG; RHH_7 is a ribbon-helix-helix protein family expressed by Helicobacter species. These proteins bind to specific DNA sequences with high affinity and usually act as repressors. Many are putatively named CopG.


The actual alignment was detected with superfamily member pfam16777:

Pssm-ID: 435578  Cd Length: 73  Bit Score: 72.91  E-value: 7.06e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 1336546994  9 KPGRKRVAvDELKRNFSVTFYLSKDEHDVLRRLADEEVESVNSFVKRHILKTIIYKK 65
Cdd:pfam16777 18 KLGRKPKA-DANKKTRAVSFYFSDDEHDKLEKLADEEEESVGSFIKRHILKAIIKIE 73
 
Name Accession Description Interval E-value
RHH_7 pfam16777
Transcriptional regulator, RHH-like, CopG; RHH_7 is a ribbon-helix-helix protein family ...
 9-65 7.06e-19

Transcriptional regulator, RHH-like, CopG; RHH_7 is a ribbon-helix-helix protein family expressed by Helicobacter species. These proteins bind to specific DNA sequences with high affinity and usually act as repressors. Many are putatively named CopG.


Pssm-ID: 435578  Cd Length: 73  Bit Score: 72.91  E-value: 7.06e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 1336546994  9 KPGRKRVAvDELKRNFSVTFYLSKDEHDVLRRLADEEVESVNSFVKRHILKTIIYKK 65
Cdd:pfam16777 18 KLGRKPKA-DANKKTRAVSFYFSDDEHDKLEKLADEEEESVGSFIKRHILKAIIKIE 73
 
Name Accession Description Interval E-value
RHH_7 pfam16777
Transcriptional regulator, RHH-like, CopG; RHH_7 is a ribbon-helix-helix protein family ...
 9-65 7.06e-19

Transcriptional regulator, RHH-like, CopG; RHH_7 is a ribbon-helix-helix protein family expressed by Helicobacter species. These proteins bind to specific DNA sequences with high affinity and usually act as repressors. Many are putatively named CopG.


Pssm-ID: 435578  Cd Length: 73  Bit Score: 72.91  E-value: 7.06e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 1336546994  9 KPGRKRVAvDELKRNFSVTFYLSKDEHDVLRRLADEEVESVNSFVKRHILKTIIYKK 65
Cdd:pfam16777 18 KLGRKPKA-DANKKTRAVSFYFSDDEHDKLEKLADEEEESVGSFIKRHILKAIIKIE 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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