|
Name |
Accession |
Description |
Interval |
E-value |
| rho |
TIGR00767 |
transcription termination factor Rho; This RNA helicase, the transcription termination factor ... |
23-437 |
0e+00 |
|
transcription termination factor Rho; This RNA helicase, the transcription termination factor Rho, occurs in nearly all bacteria but is missing from the Cyanobacteria, the Mollicutes (Mycoplasmas), and various Lactobacillales including Streptococcus. It is also missing, of course, from the Archaea, which also lack Nus factors. Members of this family from Micrococcus luteus, Mycobacterium tuberculosis, and related species have a related but highly variable long, highly charged insert near the amino end. Members of this family differ in the specificity of RNA binding. [Transcription, Transcription factors]
Pssm-ID: 162030 [Multi-domain] Cd Length: 415 Bit Score: 774.63 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 23 YHIEDLRTYPTEKLLEIANKLKVENPQEFKRQDLMFEILKTQVTQGEYILFTGILEIMPDGYGFLRGFDGSFSDGHNDTY 102
Cdd:TIGR00767 1 YNIEELKNMPLEELRKLAEQLGVENTSSLKKQELIFAILKAHAEQGGLIFGEGVLEILPDGFGFLRSPDSSYLPGPDDIY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 103 VSPSQIRRFALRNGDIVTGQVRSPKDQEKYYALLKIEAINYSPSDEIRNRPLFDNLTPLFPDEQIKLEYEPTKVTGRMLD 182
Cdd:TIGR00767 81 VSPSQIRRFNLRTGDTIEGQIRSPKEGERYFALLKVESVNGDDPEKAKNRVLFENLTPLYPNERLRLETSTEDLSTRVLD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 183 LFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDMQRSVKGQVFSSTFDLPANNHIRIA 262
Cdd:TIGR00767 161 LFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 263 ELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIET 342
Cdd:TIGR00767 241 EMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVTPASGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIDT 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 343 GSRMDEVIFEEFKGTGNSEIVLARNIADRRIYPAFDILKSGTRKDNILLGKDRLTKVWVLRNVMQQMDDIEALSFVYSKM 422
Cdd:TIGR00767 321 GSRMDEVIFEEFKGTGNMELHLDRKLADRRIFPAIDIKKSGTRKEELLLTPEELQKIWVLRKIISPMDSIEAMEFLISKL 400
|
410
....*....|....*
gi 1339790512 423 QQTKDNEEFLNLMNE 437
Cdd:TIGR00767 401 KKTKTNEEFLESMKR 415
|
|
| rho |
PRK09376 |
transcription termination factor Rho; Provisional |
23-437 |
0e+00 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 236490 [Multi-domain] Cd Length: 416 Bit Score: 773.16 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 23 YHIEDLRTYPTEKLLEIANKLKVENPQEFKRQDLMFEILKTQVTQGEYILFTGILEIMPDGYGFLRGFDGSFSDGHNDTY 102
Cdd:PRK09376 1 MNLSELKNKSLSELLELAEELGIENASRLRKQELIFAILKAQAEKGGDIFGEGVLEILPDGFGFLRSPDANYLPGPDDIY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 103 VSPSQIRRFALRNGDIVTGQVRSPKDQEKYYALLKIEAINYSPSDEIRNRPLFDNLTPLFPDEQIKLEY-EPTKVTGRML 181
Cdd:PRK09376 81 VSPSQIRRFNLRTGDTVEGKIRPPKEGERYFALLKVETVNGEDPEKARNRPLFENLTPLYPNERLRLETgNPEDLSTRII 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 182 DLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDMQRSVKGQVFSSTFDLPANNHIRI 261
Cdd:PRK09376 161 DLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 262 AELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIE 341
Cdd:PRK09376 241 AEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALID 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 342 TGSRMDEVIFEEFKGTGNSEIVLARNIADRRIYPAFDILKSGTRKDNILLGKDRLTKVWVLRNVMQQMDDIEALSFVYSK 421
Cdd:PRK09376 321 TGSRMDEVIFEEFKGTGNMELHLDRKLAEKRIFPAIDINRSGTRKEELLLSPEELQKVWILRKILSPMDEVEAMEFLLDK 400
|
410
....*....|....*.
gi 1339790512 422 MQQTKDNEEFLNLMNE 437
Cdd:PRK09376 401 LKKTKTNEEFFDSMNR 416
|
|
| Rho |
COG1158 |
Transcription termination factor Rho [Transcription]; |
67-438 |
0e+00 |
|
Transcription termination factor Rho [Transcription];
Pssm-ID: 440772 [Multi-domain] Cd Length: 373 Bit Score: 735.68 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 67 QGEYILFTGILEIMPDGYGFLRGFdgSFSDGHNDTYVSPSQIRRFALRNGDIVTGQVRSPKDQEKYYALLKIEAINYSPS 146
Cdd:COG1158 3 DDGLIPVEGVLEILPDGYGFLRSS--NYLPGPDDIYVSPSQIRRFGLRTGDAVTGQVRPPKEGEKYFALLRVESVNGEDP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 147 DEIRNRPLFDNLTPLFPDEQIKLEYEPTKVTGRMLDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVELIIL 226
Cdd:COG1158 81 EEARKRPDFDNLTPLYPDERLRLETTPDDLSTRVIDLVAPIGKGQRGLIVAPPKAGKTTLLQDIANAITANHPEVHLIVL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 227 LVDERPEEVTDMQRSVKGQVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSSGKVLSG 306
Cdd:COG1158 161 LIDERPEEVTDMQRSVKGEVIASTFDEPAERHVQVAELVIERAKRLVELGKDVVILLDSITRLARAYNLVVPASGRTLSG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 307 GVDANALHRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNSEIVLARNIADRRIYPAFDILKSGTRK 386
Cdd:COG1158 241 GVDANALYKPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMELHLDRKLAEKRIFPAIDINKSGTRR 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 1339790512 387 DNILLGKDRLTKVWVLRNVMQQMDDIEALSFVYSKMQQTKDNEEFLNLMNEK 438
Cdd:COG1158 321 EELLLSPEELEKVWILRRALSGMDPVEAMEFLLDRLKKTKSNAEFLESMNKT 372
|
|
| rho_factor_C |
cd01128 |
C-terminal ATP binding domain of transcription termination factor rho; Transcription ... |
176-423 |
5.70e-176 |
|
C-terminal ATP binding domain of transcription termination factor rho; Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal oligonucleotide/oligosaccharide binding fold (OB-fold) domain which binds cysteine-rich nucleotides, and a C-terminal ATP binding domain. This alignment is of the C-terminal ATP binding domain.
Pssm-ID: 410872 [Multi-domain] Cd Length: 249 Bit Score: 491.72 E-value: 5.70e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 176 VTGRMLDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDMQRSVKGQVFSSTFDLPA 255
Cdd:cd01128 2 LSTRVIDLIAPIGKGQRGLIVAPPKAGKTTLLQNIANAIAKNHPEVELIVLLIDERPEEVTDMRRSVKGEVVASTFDEPP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 256 NNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTII 335
Cdd:cd01128 82 ERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKTLSGGVDANALHKPKRFFGAARNIEEGGSLTII 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 336 ATALIETGSRMDEVIFEEFKGTGNSEIVLARNIADRRIYPAFDILKSGTRKDNILLGKDRLTKVWVLRNVMQQMDDIEAL 415
Cdd:cd01128 162 ATALVDTGSRMDEVIFEEFKGTGNMELVLDRKLAEKRIFPAIDILKSGTRKEELLLTPEELQKIWLLRRILSPMDPIEAM 241
|
....*...
gi 1339790512 416 SFVYSKMQ 423
Cdd:cd01128 242 EFLLKKLK 249
|
|
| Rho_RNA_bind |
pfam07497 |
Rho termination factor, RNA-binding domain; The Rho termination factor disengages newly ... |
74-143 |
8.44e-36 |
|
Rho termination factor, RNA-binding domain; The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers.
Pssm-ID: 462182 [Multi-domain] Cd Length: 72 Bit Score: 126.33 E-value: 8.44e-36
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 74 TGILEIMPDGYGFLRGfdGSFSDGHNDTYVSPSQIRRFALRNGDIVTGQVRSPKDQEKYYALLKIEAINY 143
Cdd:pfam07497 1 EGILEILPDGYGFLRS--SNYLPGPDDIYVSPSQIRRFGLRTGDIVEGQVRPPKEGEKYFALLRVESVNG 68
|
|
| CSP |
smart00357 |
Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria ... |
74-140 |
1.30e-14 |
|
Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor.
Pssm-ID: 214633 [Multi-domain] Cd Length: 64 Bit Score: 68.01 E-value: 1.30e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1339790512 74 TGILEIMPDGYGFLRGfdgsfSDGHNDTYVSPSQI--RRFALRNGDIVTGQVRSPKDQEKYYALLKIEA 140
Cdd:smart00357 1 TGVVKWFNKGFGFIRP-----DDGGKDVFVHPSQIqgGLKSLREGDEVEFKVVSPEGGEKPEAENVVKL 64
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| rho |
TIGR00767 |
transcription termination factor Rho; This RNA helicase, the transcription termination factor ... |
23-437 |
0e+00 |
|
transcription termination factor Rho; This RNA helicase, the transcription termination factor Rho, occurs in nearly all bacteria but is missing from the Cyanobacteria, the Mollicutes (Mycoplasmas), and various Lactobacillales including Streptococcus. It is also missing, of course, from the Archaea, which also lack Nus factors. Members of this family from Micrococcus luteus, Mycobacterium tuberculosis, and related species have a related but highly variable long, highly charged insert near the amino end. Members of this family differ in the specificity of RNA binding. [Transcription, Transcription factors]
Pssm-ID: 162030 [Multi-domain] Cd Length: 415 Bit Score: 774.63 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 23 YHIEDLRTYPTEKLLEIANKLKVENPQEFKRQDLMFEILKTQVTQGEYILFTGILEIMPDGYGFLRGFDGSFSDGHNDTY 102
Cdd:TIGR00767 1 YNIEELKNMPLEELRKLAEQLGVENTSSLKKQELIFAILKAHAEQGGLIFGEGVLEILPDGFGFLRSPDSSYLPGPDDIY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 103 VSPSQIRRFALRNGDIVTGQVRSPKDQEKYYALLKIEAINYSPSDEIRNRPLFDNLTPLFPDEQIKLEYEPTKVTGRMLD 182
Cdd:TIGR00767 81 VSPSQIRRFNLRTGDTIEGQIRSPKEGERYFALLKVESVNGDDPEKAKNRVLFENLTPLYPNERLRLETSTEDLSTRVLD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 183 LFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDMQRSVKGQVFSSTFDLPANNHIRIA 262
Cdd:TIGR00767 161 LFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 263 ELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIET 342
Cdd:TIGR00767 241 EMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVTPASGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIDT 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 343 GSRMDEVIFEEFKGTGNSEIVLARNIADRRIYPAFDILKSGTRKDNILLGKDRLTKVWVLRNVMQQMDDIEALSFVYSKM 422
Cdd:TIGR00767 321 GSRMDEVIFEEFKGTGNMELHLDRKLADRRIFPAIDIKKSGTRKEELLLTPEELQKIWVLRKIISPMDSIEAMEFLISKL 400
|
410
....*....|....*
gi 1339790512 423 QQTKDNEEFLNLMNE 437
Cdd:TIGR00767 401 KKTKTNEEFLESMKR 415
|
|
| rho |
PRK09376 |
transcription termination factor Rho; Provisional |
23-437 |
0e+00 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 236490 [Multi-domain] Cd Length: 416 Bit Score: 773.16 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 23 YHIEDLRTYPTEKLLEIANKLKVENPQEFKRQDLMFEILKTQVTQGEYILFTGILEIMPDGYGFLRGFDGSFSDGHNDTY 102
Cdd:PRK09376 1 MNLSELKNKSLSELLELAEELGIENASRLRKQELIFAILKAQAEKGGDIFGEGVLEILPDGFGFLRSPDANYLPGPDDIY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 103 VSPSQIRRFALRNGDIVTGQVRSPKDQEKYYALLKIEAINYSPSDEIRNRPLFDNLTPLFPDEQIKLEY-EPTKVTGRML 181
Cdd:PRK09376 81 VSPSQIRRFNLRTGDTVEGKIRPPKEGERYFALLKVETVNGEDPEKARNRPLFENLTPLYPNERLRLETgNPEDLSTRII 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 182 DLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDMQRSVKGQVFSSTFDLPANNHIRI 261
Cdd:PRK09376 161 DLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 262 AELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIE 341
Cdd:PRK09376 241 AEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALID 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 342 TGSRMDEVIFEEFKGTGNSEIVLARNIADRRIYPAFDILKSGTRKDNILLGKDRLTKVWVLRNVMQQMDDIEALSFVYSK 421
Cdd:PRK09376 321 TGSRMDEVIFEEFKGTGNMELHLDRKLAEKRIFPAIDINRSGTRKEELLLSPEELQKVWILRKILSPMDEVEAMEFLLDK 400
|
410
....*....|....*.
gi 1339790512 422 MQQTKDNEEFLNLMNE 437
Cdd:PRK09376 401 LKKTKTNEEFFDSMNR 416
|
|
| Rho |
COG1158 |
Transcription termination factor Rho [Transcription]; |
67-438 |
0e+00 |
|
Transcription termination factor Rho [Transcription];
Pssm-ID: 440772 [Multi-domain] Cd Length: 373 Bit Score: 735.68 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 67 QGEYILFTGILEIMPDGYGFLRGFdgSFSDGHNDTYVSPSQIRRFALRNGDIVTGQVRSPKDQEKYYALLKIEAINYSPS 146
Cdd:COG1158 3 DDGLIPVEGVLEILPDGYGFLRSS--NYLPGPDDIYVSPSQIRRFGLRTGDAVTGQVRPPKEGEKYFALLRVESVNGEDP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 147 DEIRNRPLFDNLTPLFPDEQIKLEYEPTKVTGRMLDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVELIIL 226
Cdd:COG1158 81 EEARKRPDFDNLTPLYPDERLRLETTPDDLSTRVIDLVAPIGKGQRGLIVAPPKAGKTTLLQDIANAITANHPEVHLIVL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 227 LVDERPEEVTDMQRSVKGQVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSSGKVLSG 306
Cdd:COG1158 161 LIDERPEEVTDMQRSVKGEVIASTFDEPAERHVQVAELVIERAKRLVELGKDVVILLDSITRLARAYNLVVPASGRTLSG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 307 GVDANALHRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNSEIVLARNIADRRIYPAFDILKSGTRK 386
Cdd:COG1158 241 GVDANALYKPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMELHLDRKLAEKRIFPAIDINKSGTRR 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 1339790512 387 DNILLGKDRLTKVWVLRNVMQQMDDIEALSFVYSKMQQTKDNEEFLNLMNEK 438
Cdd:COG1158 321 EELLLSPEELEKVWILRRALSGMDPVEAMEFLLDRLKKTKSNAEFLESMNKT 372
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
75-432 |
0e+00 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 562.60 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 75 GILEIMpDGYGFLRgfDGSFSDGHNDTYVSPSQIRRFALRNGDIVTGQVRSPKDQE------KYYALLKIEAINYSPSDE 148
Cdd:PRK12678 298 GILDVL-DNYAFVR--TSGYLPGPNDVYVSMNQVRKNGLRKGDAVTGAVRAPREGEqgnqrqKFNPLVRLDSVNGMSPEE 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 149 IRNRPLFDNLTPLFPDEQIKLEYEPTKVTGRMLDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVELIILLV 228
Cdd:PRK12678 375 AKKRPEFGKLTPLYPNERLRLETEPKKLTTRVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLV 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 229 DERPEEVTDMQRSVKGQVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSSGKVLSGGV 308
Cdd:PRK12678 455 DERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRLVELGKDVVVLLDSITRLGRAYNLAAPASGRILSGGV 534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 309 DANALHRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNSEIVLARNIADRRIYPAFDILKSGTRKDN 388
Cdd:PRK12678 535 DSTALYPPKRFFGAARNIENGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELKLDRKLADKRIFPAVDVNASGTRKEE 614
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1339790512 389 ILLGKDRLTKVWVLRNVMQQMDDIEALSFVYSKMQQTKDNEEFL 432
Cdd:PRK12678 615 LLLSPDELAIVHKLRRVLSGLDSQQAIDLLISRLKKTKSNYEFL 658
|
|
| PRK12608 |
PRK12608 |
transcription termination factor Rho; Provisional |
73-436 |
0e+00 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237150 [Multi-domain] Cd Length: 380 Bit Score: 544.30 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 73 FTGILEIMPDGYGFLRGFDGSFSDGHNDTYVSPSQIRRFALRNGDIVTGQVRSpkdQEKYYALLKIEAINYSPSDEIRNR 152
Cdd:PRK12608 19 VLGVLEILGDGFGFLRSARRNYLPSPDDVFVPPALIRRFNLRTGDVVEGVARP---RERYRVLVRVDSVNGTDPEKLARR 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 153 PLFDNLTPLFPDEQIKLEYEPTKVTGRMLDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVELIILLVDERP 232
Cdd:PRK12608 96 PHFDDLTPLHPRERLRLETGSDDLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERP 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 233 EEVTDMQRSVKGQVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSSGKVLSGGVDANA 312
Cdd:PRK12608 176 EEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRLARAYNNEVESSGRTLSGGVDARA 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 313 LHRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNSEIVLARNIADRRIYPAFDILKSGTRKDNILLG 392
Cdd:PRK12608 256 LQRPKRLFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMEIVLDRELADKRVFPAIDIAKSGTRREELLLD 335
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1339790512 393 KDRLTKVWVLRNVMQQMDDIEALSFVYSKMQQTKDNEEFLNLMN 436
Cdd:PRK12608 336 SKELEKVRRLRRALASRKPVEAMEALLEKLRETPDNAEFLNSVQ 379
|
|
| rho_factor_C |
cd01128 |
C-terminal ATP binding domain of transcription termination factor rho; Transcription ... |
176-423 |
5.70e-176 |
|
C-terminal ATP binding domain of transcription termination factor rho; Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal oligonucleotide/oligosaccharide binding fold (OB-fold) domain which binds cysteine-rich nucleotides, and a C-terminal ATP binding domain. This alignment is of the C-terminal ATP binding domain.
Pssm-ID: 410872 [Multi-domain] Cd Length: 249 Bit Score: 491.72 E-value: 5.70e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 176 VTGRMLDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDMQRSVKGQVFSSTFDLPA 255
Cdd:cd01128 2 LSTRVIDLIAPIGKGQRGLIVAPPKAGKTTLLQNIANAIAKNHPEVELIVLLIDERPEEVTDMRRSVKGEVVASTFDEPP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 256 NNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTII 335
Cdd:cd01128 82 ERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKTLSGGVDANALHKPKRFFGAARNIEEGGSLTII 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 336 ATALIETGSRMDEVIFEEFKGTGNSEIVLARNIADRRIYPAFDILKSGTRKDNILLGKDRLTKVWVLRNVMQQMDDIEAL 415
Cdd:cd01128 162 ATALVDTGSRMDEVIFEEFKGTGNMELVLDRKLAEKRIFPAIDILKSGTRKEELLLTPEELQKIWLLRRILSPMDPIEAM 241
|
....*...
gi 1339790512 416 SFVYSKMQ 423
Cdd:cd01128 242 EFLLKKLK 249
|
|
| Rho_RNA_bind |
pfam07497 |
Rho termination factor, RNA-binding domain; The Rho termination factor disengages newly ... |
74-143 |
8.44e-36 |
|
Rho termination factor, RNA-binding domain; The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers.
Pssm-ID: 462182 [Multi-domain] Cd Length: 72 Bit Score: 126.33 E-value: 8.44e-36
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 74 TGILEIMPDGYGFLRGfdGSFSDGHNDTYVSPSQIRRFALRNGDIVTGQVRSPKDQEKYYALLKIEAINY 143
Cdd:pfam07497 1 EGILEILPDGYGFLRS--SNYLPGPDDIYVSPSQIRRFGLRTGDIVEGQVRPPKEGEKYFALLRVESVNG 68
|
|
| Rho_CSD |
cd04459 |
Rho_CSD: Rho protein cold-shock domain (CSD). Rho protein is a transcription termination ... |
73-140 |
4.64e-35 |
|
Rho_CSD: Rho protein cold-shock domain (CSD). Rho protein is a transcription termination factor in most bacteria. In bacteria, there are two distinct mechanisms for mRNA transcription termination. In intrinsic termination, RNA polymerase and nascent mRNA are released from DNA template by an mRNA stem loop structure, which resembles the transcription termination mechanism used by eukaryotic pol III. The second mechanism is mediated by Rho factor. Rho factor terminates transcription by using energy from ATP hydrolysis to forcibly dissociate the transcripts from RNA polymerase. Rho protein contains an N-terminal S1-like domain, which binds single-stranded RNA. Rho has a C-terminal ATPase domain which hydrolyzes ATP to provide energy to strip RNA polymerase and mRNA from the DNA template. Rho functions as a homohexamer.
Pssm-ID: 239906 [Multi-domain] Cd Length: 68 Bit Score: 124.27 E-value: 4.64e-35
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1339790512 73 FTGILEIMPDGYGFLRGFDGSFSDGHNDTYVSPSQIRRFALRNGDIVTGQVRSPKDQEKYYALLKIEA 140
Cdd:cd04459 1 GSGVLEILPDGFGFLRSSGYNYLPGPDDIYVSPSQIRRFNLRTGDTVVGQIRPPKEGERYFALLKVEA 68
|
|
| ATP-synt_ab |
pfam00006 |
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP ... |
179-382 |
2.30e-26 |
|
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Pssm-ID: 425417 [Multi-domain] Cd Length: 212 Bit Score: 105.52 E-value: 2.30e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 179 RMLDLFSPVGKGQRALIVAPPRTGKTELMkelaqGITSNHPEVELIIL-LVDERPEEVTD----------MQRSVkgqVF 247
Cdd:pfam00006 3 RAIDGLLPIGRGQRIGIFGGSGVGKTVLA-----GMIARQASADVVVYaLIGERGREVREfieellgsgaLKRTV---VV 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 248 SSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSSGKVLS-----GGVD---ANALHRpkrf 319
Cdd:pfam00006 75 VATSDEPPLARYRAPYTALTIAEYFRDQGKDVLLIMDSLTRFAEALREISLALGEPPGregypPSVFsllARLLER---- 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1339790512 320 fgAARNIEEGGSLTIIATALIEtGSRMDEVIFEEFKGTGNSEIVLARNIADRRIYPAFDILKS 382
Cdd:pfam00006 151 --AGRVKGKGGSITALPTVLVP-GDDITDPIPDNTRSILDGQIVLSRDLAEKGHYPAIDVLAS 210
|
|
| ATPase_flagellum-secretory_path_III |
cd01136 |
Flagellum-specific ATPase/type III secretory pathway virulence-related protein; ... |
173-385 |
1.09e-23 |
|
Flagellum-specific ATPase/type III secretory pathway virulence-related protein; Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton-driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Pssm-ID: 410880 [Multi-domain] Cd Length: 265 Bit Score: 99.56 E-value: 1.09e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 173 PTKVtgRMLDLFSPVGKGQRALIVAPPRTGKTELMkelaqGITSNHPEVELIIL-LVDERPEEVTD----------MQRS 241
Cdd:cd01136 52 PTGV--RAIDGLLTCGEGQRIGIFAGSGVGKSTLL-----GMIARNTDADVNVIaLIGERGREVREfiekdlgeegLKRS 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 242 VkgqVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSSGKVL-SGGVDANALHRPKRFF 320
Cdd:cd01136 125 V---LVVATSDESPLLRVRAAYTATAIAEYFRDQGKKVLLLMDSLTRFAMAQREVGLAAGEPPtRRGYPPSVFALLPRLL 201
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1339790512 321 GAARNIEEGgSLTIIATALIEtGSRMDEVIFEEFKGTGNSEIVLARNIADRRIYPAFDILKSGTR 385
Cdd:cd01136 202 ERAGNGEKG-SITAFYTVLVE-GDDFNDPIADEVRSILDGHIVLSRRLAERGHYPAIDVLASISR 264
|
|
| RecA-like_ion-translocating_ATPases |
cd19476 |
RecA-like domain of ion-translocating ATPases; RecA-like NTPases. This family includes the ... |
176-385 |
3.66e-22 |
|
RecA-like domain of ion-translocating ATPases; RecA-like NTPases. This family includes the NTP-binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410884 [Multi-domain] Cd Length: 270 Bit Score: 95.60 E-value: 3.66e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 176 VTG-RMLDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVeLIILLVDERPEEVTD----------MQRSVkg 244
Cdd:cd19476 52 QTGiKVIDLLAPYGRGQKIGIFGGSGVGKTVLAMQLARNQAKAHAGV-VVFAGIGERGREVNDlyeeftksgaMERTV-- 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 245 qVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSSGKVLSG-GVDANALHRPKRFFG-A 322
Cdd:cd19476 129 -VVANTANDPPGARMRVPYTGLTIAEYFRDNGQHVLLIIDDISRYAEALREMSALLGEPPGReGYPPYLFTKLATLYErA 207
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1339790512 323 ARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTgNSEIVLARNIADRRIYPAFDILKSGTR 385
Cdd:cd19476 208 GKVKDGGGSITAIPAVSTPGDDLTDPIPDNTFAIL-DGQIVLSRELARKGIYPAINVLDSTSR 269
|
|
| PRK07594 |
PRK07594 |
EscN/YscN/HrcN family type III secretion system ATPase; |
176-415 |
3.33e-20 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 136438 [Multi-domain] Cd Length: 433 Bit Score: 92.32 E-value: 3.33e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 176 VTG-RMLDLFSPVGKGQRALIVAPPRTGKTELMKELaqgitSNHPEVELIIL-LVDERPEEVTDM----------QRSVk 243
Cdd:PRK07594 140 MTGiRAIDSVATCGEGQRVGIFSAPGVGKSTLLAML-----CNAPDADSNVLvLIGERGREVREFidftlseetrKRCV- 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 244 gqVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSSGKVLSGGVdanalHRPKRFFGAA 323
Cdd:PRK07594 214 --IVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE-----YPPGVFSALP 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 324 RNIE-----EGGSLTIIATALIEtGSRMDEVIFEEFKGTGNSEIVLARNIADRRIYPAFDILKSGTRKDNILLGKDRLTK 398
Cdd:PRK07594 287 RLLErtgmgEKGSITAFYTVLVE-GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQL 365
|
250
....*....|....*..
gi 1339790512 399 VWVLRNVMQQMDDIEAL 415
Cdd:PRK07594 366 AAILRRCLALYQEVELL 382
|
|
| PRK06820 |
PRK06820 |
EscN/YscN/HrcN family type III secretion system ATPase; |
179-429 |
1.52e-17 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 180712 [Multi-domain] Cd Length: 440 Bit Score: 84.48 E-value: 1.52e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 179 RMLDLFSPVGKGQRALIVAPPRTGKTELMkelaqGITSNHPEVELIIL-LVDERPEEVTDM----------QRSVkgqVF 247
Cdd:PRK06820 152 RAIDGILSCGEGQRIGIFAAAGVGKSTLL-----GMLCADSAADVMVLaLIGERGREVREFleqvltpearARTV---VV 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 248 SSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSSGKV-LSGGVDANALHRPKRFFGAARNI 326
Cdd:PRK06820 224 VATSDRPALERLKGLSTATTIAEYFRDRGKKVLLMADSLTRYARAAREIGLAAGEPpAAGSFPPSVFANLPRLLERTGNS 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 327 EEGgSLTIIATALIEtGSRMDEVIFEEFKGTGNSEIVLARNIADRRIYPAFDILKSGTRKDNILLGKDRLTKVWVLRNVM 406
Cdd:PRK06820 304 DRG-SITAFYTVLVE-GDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSAGQLAMAQKLRRML 381
|
250 260
....*....|....*....|....*
gi 1339790512 407 QQMDDIEALSFV--YSKMQQTKDNE 429
Cdd:PRK06820 382 ACYQEIELLVRVgeYQAGEDLQADE 406
|
|
| fliI |
PRK07721 |
flagellar protein export ATPase FliI; |
172-415 |
6.76e-17 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181092 [Multi-domain] Cd Length: 438 Bit Score: 82.46 E-value: 6.76e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 172 EPTKVTGRMLDLFSPVGKGQRALIVAPPRTGKTELMkelaqGITSNHPEVEL-IILLVDERPEEVTD----------MQR 240
Cdd:PRK07721 140 EPMEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTLM-----GMIARNTSADLnVIALIGERGREVREfierdlgpegLKR 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 241 SVkgqVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAV-------------TPSSGKVLsgg 307
Cdd:PRK07721 215 SI---VVVATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIglavgeppttkgyTPSVFAIL--- 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 308 vdanalhrPKRFFGAARNieEGGSLTIIATALIEtGSRMDEVIFEEFKGTGNSEIVLARNIADRRIYPAFDILKSGTRKD 387
Cdd:PRK07721 289 --------PKLLERTGTN--ASGSITAFYTVLVD-GDDMNEPIADTVRGILDGHFVLDRQLANKGQYPAINVLKSVSRVM 357
|
250 260
....*....|....*....|....*...
gi 1339790512 388 NILLGKDRLTKVWVLRNVMQQMDDIEAL 415
Cdd:PRK07721 358 NHIVSPEHKEAANRFRELLSTYQNSEDL 385
|
|
| PRK06936 |
PRK06936 |
EscN/YscN/HrcN family type III secretion system ATPase; |
168-415 |
1.89e-16 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 180762 [Multi-domain] Cd Length: 439 Bit Score: 80.95 E-value: 1.89e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 168 KLEYEPTKVTGRMLDLFSPVGKGQRALIVAPPRTGKTELMKELAQGitsnhPEVELIIL-LVDERPEEVTD--------- 237
Cdd:PRK06936 140 RLIETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRS-----AEVDVTVLaLIGERGREVREfiesdlgee 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 238 -MQRSVkgqVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTpssgkvLSGGVDANALHRP 316
Cdd:PRK06936 215 gLRKAV---LVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQREIG------LAAGEPPTRRGYP 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 317 KRFFGAARNIEE------GGSLTIIATALIEtGSRMDEVIFEEFKGTGNSEIVLARNIADRRIYPAFDILKSGTRKDNIL 390
Cdd:PRK06936 286 PSVFAALPRLMEragqsdKGSITALYTVLVE-GDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQI 364
|
250 260
....*....|....*....|....*
gi 1339790512 391 LGKDRLTKVWVLRNVMQQMDDIEAL 415
Cdd:PRK06936 365 VSKEHKTWAGRLRELLAKYEEVELL 389
|
|
| PRK08149 |
PRK08149 |
FliI/YscN family ATPase; |
176-385 |
7.09e-16 |
|
FliI/YscN family ATPase;
Pssm-ID: 236166 [Multi-domain] Cd Length: 428 Bit Score: 79.27 E-value: 7.09e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 176 VTG-RMLDLFSPVGKGQRALIVAPPRTGKTELMKELAqgitsNHPEVEL-IILLVDERPEEVTD----MQRSVKGQ---V 246
Cdd:PRK08149 136 ITGvRAIDGLLTCGVGQRMGIFASAGCGKTSLMNMLI-----EHSEADVfVIGLIGERGREVTEfvesLRASSRREkcvL 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 247 FSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSSGKV-LSGGVDANA-------LHRPKR 318
Cdd:PRK08149 211 VYATSDFSSVDRCNAALVATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAAGELpARRGYPASVfdslprlLERPGA 290
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1339790512 319 FfgaarnieEGGSLTIIATALIETGSRMDeVIFEEFKGTGNSEIVLARNIADRRIYPAFDILKSGTR 385
Cdd:PRK08149 291 T--------LAGSITAFYTVLLESEEEPD-PIGDEIRSILDGHIYLSRKLAAKGHYPAIDVLKSVSR 348
|
|
| PRK09099 |
PRK09099 |
type III secretion system ATPase; Provisional |
173-415 |
6.79e-15 |
|
type III secretion system ATPase; Provisional
Pssm-ID: 169656 [Multi-domain] Cd Length: 441 Bit Score: 76.35 E-value: 6.79e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 173 PTKVtgRMLDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPevelIILLVDERPEEVTD----------MQRSV 242
Cdd:PRK09099 148 PTGV--RIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVN----VIALIGERGREVREfielilgedgMARSV 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 243 kgqVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSSGKVlsggvDANALHRPKRFFGA 322
Cdd:PRK09099 222 ---VVCATSDRSSIERAKAAYVATAIAEYFRDRGLRVLLMMDSLTRFARAQREIGLAAGEP-----PARRGFPPSVFAEL 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 323 ARNIE-----EGGSLTIIATALIETGSRMDEVIfEEFKGTGNSEIVLARNIADRRIYPAFDILKSGTRKDNILLGKDRLT 397
Cdd:PRK09099 294 PRLLEragmgETGSITALYTVLAEDESGSDPIA-EEVRGILDGHMILSREIAARNQYPAIDVLGSLSRVMPQVVPREHVQ 372
|
250
....*....|....*...
gi 1339790512 398 KVWVLRNVMQQMDDIEAL 415
Cdd:PRK09099 373 AAGRLRQLLAKHREVETL 390
|
|
| CSP |
smart00357 |
Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria ... |
74-140 |
1.30e-14 |
|
Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor.
Pssm-ID: 214633 [Multi-domain] Cd Length: 64 Bit Score: 68.01 E-value: 1.30e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1339790512 74 TGILEIMPDGYGFLRGfdgsfSDGHNDTYVSPSQI--RRFALRNGDIVTGQVRSPKDQEKYYALLKIEA 140
Cdd:smart00357 1 TGVVKWFNKGFGFIRP-----DDGGKDVFVHPSQIqgGLKSLREGDEVEFKVVSPEGGEKPEAENVVKL 64
|
|
| FliI |
COG1157 |
Flagellar biosynthesis/type III secretory pathway ATPase FliI [Cell motility, Intracellular ... |
152-382 |
4.00e-14 |
|
Flagellar biosynthesis/type III secretory pathway ATPase FliI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440771 [Multi-domain] Cd Length: 433 Bit Score: 73.91 E-value: 4.00e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 152 RPLfDNLTPLFPDEQIKLEYEP---------TKV--TG-RMLDLFSPVGKGQRALIVAPPRTGKTELMKELAQgitsnHP 219
Cdd:COG1157 108 RPL-DGKGPLPGEERRPLDAPPpnplerariTEPldTGvRAIDGLLTVGRGQRIGIFAGSGVGKSTLLGMIAR-----NT 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 220 EVELIIL-LVDERPEEVTD----------MQRSVkgqVFSSTFDLPAnnhiriaelvLERAK------------RrvEMG 276
Cdd:COG1157 182 EADVNVIaLIGERGREVREfieddlgeegLARSV---VVVATSDEPP----------LMRLRaaytataiaeyfR--DQG 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 277 KDVVVLLDSITRLARA----------------YnavTPSsgkVLSggvdanALhrpkrffgaARNIE-----EGGSLTII 335
Cdd:COG1157 247 KNVLLLMDSLTRFAMAqreiglaageppatrgY---PPS---VFA------LL---------PRLLEragngGKGSITAF 305
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1339790512 336 ATALIEtGSRMDEVIFEEFKGT--GNseIVLARNIADRRIYPAFDILKS 382
Cdd:COG1157 306 YTVLVE-GDDMNDPIADAVRGIldGH--IVLSRKLAERGHYPAIDVLAS 351
|
|
| fliI |
PRK08927 |
flagellar protein export ATPase FliI; |
179-385 |
7.49e-14 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 236351 [Multi-domain] Cd Length: 442 Bit Score: 73.09 E-value: 7.49e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 179 RMLDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNhpevELIILLVDERPEEVTD----------MQRSVkgqVFS 248
Cdd:PRK08927 147 RALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNADAD----VSVIGLIGERGREVQEflqddlgpegLARSV---VVV 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 249 STFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSSG-----KVLSGGVDANAlhrPKRFFGAA 323
Cdd:PRK08927 220 ATSDEPALMRRQAAYLTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIGLSAGeppttKGYTPTVFAEL---PRLLERAG 296
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1339790512 324 RNIEEGGSLTIIATALIEtGSRMDEVIFEEFKGTGNSEIVLARNIADRRIYPAFDILKSGTR 385
Cdd:PRK08927 297 PGPIGEGTITGLFTVLVD-GDDHNEPVADAVRGILDGHIVMERAIAERGRYPAINVLKSVSR 357
|
|
| fliI |
PRK07196 |
flagellar protein export ATPase FliI; |
153-415 |
8.80e-14 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 180875 [Multi-domain] Cd Length: 434 Bit Score: 72.62 E-value: 8.80e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 153 PLFDNLTPLFPDEQIKLEyEPTKVTGRMLDLFSPVGKGQRALIVAPPRTGKTELMkelaqGITSNHPEVELIIL-LVDER 231
Cdd:PRK07196 119 PLQQQLPQIHPLQRRAVD-TPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLL-----GMITRYTQADVVVVgLIGER 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 232 PEEV---TDMQRSVKGQVFSSTFDLPANN----HIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSSGKV- 303
Cdd:PRK07196 193 GREVkefIEHSLQAAGMAKSVVVAAPADEsplmRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIALSLGEPp 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 304 LSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIfEEFKGTGNSEIVLARNIADRRIYPAFDILKSG 383
Cdd:PRK07196 273 ATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIV-DCARAVLDGHIVLSRKLAEAGHYPAIDISQSI 351
|
250 260 270
....*....|....*....|....*....|..
gi 1339790512 384 TRKDNILLGKDRLTKVWVLRNVMQQMDDIEAL 415
Cdd:PRK07196 352 SRCMSQVIGSQQAKAASLLKQCYADYMAIKPL 383
|
|
| fliI |
PRK06002 |
flagellar protein export ATPase FliI; |
177-385 |
4.17e-13 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 235666 [Multi-domain] Cd Length: 450 Bit Score: 70.80 E-value: 4.17e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 177 TG-RMLDLFSPVGKGQRALIVAPPRTGKTELMKELAQgitSNHPEvELIILLVDERPEEVTD---------MQRSVkgqV 246
Cdd:PRK06002 151 TGvRVIDIFTPLCAGQRIGIFAGSGVGKSTLLAMLAR---ADAFD-TVVIALVGERGREVREfledtladnLKKAV---A 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 247 FSSTFD-------LPANNHIRIAELVLERakrrvemGKDVVVLLDSITRLARAYNAVTPSSGKvlsggvDANALHRPKRF 319
Cdd:PRK06002 224 VVATSDespmmrrLAPLTATAIAEYFRDR-------GENVLLIVDSVTRFAHAAREVALAAGE------PPVARGYPPSV 290
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1339790512 320 FG--------AARNIEEGGSLTIIATALIEtGSRMDEVIFEEFKGTGNSEIVLARNIADRRIYPAFDILKSGTR 385
Cdd:PRK06002 291 FSelprllerAGPGAEGGGSITGIFSVLVD-GDDHNDPVADSIRGTLDGHIVLDRAIAEQGRYPAVDPLASISR 363
|
|
| fliI |
PRK06793 |
flagellar protein export ATPase FliI; |
144-430 |
6.77e-13 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 180696 [Multi-domain] Cd Length: 432 Bit Score: 70.01 E-value: 6.77e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 144 SPSDEIRNRPlfdnlTPLFPDEQIKLEYEP---------TKV--TG-RMLDLFSPVGKGQRALIVAPPRTGKTELMkela 211
Cdd:PRK06793 103 SANGEVLNEE-----AENIPLQKIKLDAPPihafereeiTDVfeTGiKSIDSMLTIGIGQKIGIFAGSGVGKSTLL---- 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 212 qGITSNHPEVEL-IILLVDERPEEVTDMQRSVKGQ-------VFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLL 283
Cdd:PRK06793 174 -GMIAKNAKADInVISLVGERGREVKDFIRKELGEegmrksvVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMM 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 284 DSITRLARAYNAVTPSSGKVLSGGVDANALHRPKRFFGAARNIEEgGSLTIIATALIEtGSRMDEVIFEEFKGTGNSEIV 363
Cdd:PRK06793 253 DSVTRFADARRSVDIAVKELPIGGKTLLMESYMKKLLERSGKTQK-GSITGIYTVLVD-GDDLNGPVPDLARGILDGHIV 330
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1339790512 364 LARNIADRRIYPAFDILKSGTRKDNILLGKDRltkvWVLRNVMQQMDDIEALSFVYSKMQQTKDNEE 430
Cdd:PRK06793 331 LKRELATLSHYPAISVLDSVSRIMEEIVSPNH----WQLANEMRKILSIYKENELYFKLGTIQENAE 393
|
|
| fliI |
PRK05688 |
flagellar protein export ATPase FliI; |
172-427 |
1.32e-11 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 168181 [Multi-domain] Cd Length: 451 Bit Score: 65.91 E-value: 1.32e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 172 EPTKVTGRMLDLFSPVGKGQRALIVAPPRTGKTELMkelaqGITSNHPEVELIIL-LVDERPEEVTD----------MQR 240
Cdd:PRK05688 150 EPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLL-----GMMTRFTEADIIVVgLIGERGREVKEfiehilgeegLKR 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 241 SVkgqVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSSGKV-LSGGVDANALHRPKRF 319
Cdd:PRK05688 225 SV---VVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPpATKGYPPSVFAKLPKL 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 320 FGAARNIEEG-GSLTIIATALIEtGSRMDEVIFEEFKGTGNSEIVLARNIADRRIYPAFDILKSGTRkdnillgkdrltk 398
Cdd:PRK05688 302 VERAGNAEPGgGSITAFYTVLSE-GDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISR------------- 367
|
250 260 270
....*....|....*....|....*....|....*
gi 1339790512 399 vwvlrnVMQQMDDIEALS----F--VYSKMQQTKD 427
Cdd:PRK05688 368 ------VMPQVVDPEHLRraqrFkqLWSRYQQSRD 396
|
|
| Rho_N |
pfam07498 |
Rho termination factor, N-terminal domain; The Rho termination factor disengages newly ... |
27-69 |
3.01e-11 |
|
Rho termination factor, N-terminal domain; The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers. This domain is found to the N-terminus of the RNA binding domain (pfam07497).
Pssm-ID: 429493 [Multi-domain] Cd Length: 43 Bit Score: 57.77 E-value: 3.01e-11
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1339790512 27 DLRTYPTEKLLEIANKLKVENPQEFKRQDLMFEILKTQVTQGE 69
Cdd:pfam07498 1 ELKEKTLSELREIAKELGIENYSRLRKQELIFAILKAQAEKGG 43
|
|
| fliI |
PRK08972 |
flagellar protein export ATPase FliI; |
152-427 |
1.08e-10 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181599 [Multi-domain] Cd Length: 444 Bit Score: 63.18 E-value: 1.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 152 RPLfDNLTPLFPDEQIKLE------------YEPTKVTGRMLDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNhp 219
Cdd:PRK08972 113 NPL-DGLGPIYTDQRASRHsppinplsrrpiTEPLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD-- 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 220 evELIILLVDERPEEVTDM----------QRSVkgqVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRL 289
Cdd:PRK08972 190 --VIVVGLVGERGREVKEFieeilgeegrARSV---VVAAPADTSPLMRLKGCETATTIAEYFRDQGLNVLLLMDSLTRY 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 290 ARAYNAVTPSSGKV-LSGGVDANALHRPKRFFGAARNIEEG-GSLTIIATALIEtGSRMDEVIFEEFKGTGNSEIVLARN 367
Cdd:PRK08972 265 AQAQREIALAVGEPpATKGYPPSVFAKLPALVERAGNGGPGqGSITAFYTVLTE-GDDLQDPIADASRAILDGHIVLSRE 343
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1339790512 368 IADRRIYPAFDILKSGTRkdnillgkdrltkvwvlrnVMQQ------MDDIEALSFVYSKMQQTKD 427
Cdd:PRK08972 344 LADSGHYPAIDIEASISR-------------------VMPMviseehLEAMRRVKQVYSLYQQNRD 390
|
|
| Rho_N |
smart00959 |
Rho termination factor, N-terminal domain; The Rho termination factor disengages newly ... |
27-69 |
4.86e-10 |
|
Rho termination factor, N-terminal domain; The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers. This domain is found to the N-terminus of the RNA binding domain.
Pssm-ID: 198027 [Multi-domain] Cd Length: 43 Bit Score: 54.69 E-value: 4.86e-10
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1339790512 27 DLRTYPTEKLLEIANKLKVENPQEFKRQDLMFEILKTQVTQGE 69
Cdd:smart00959 1 ELKKKTLSELLEIAKELGIENASRLRKQELIFAILKAQAKKGG 43
|
|
| fliI |
PRK07960 |
flagellum-specific ATP synthase FliI; |
187-399 |
1.86e-08 |
|
flagellum-specific ATP synthase FliI;
Pssm-ID: 181182 [Multi-domain] Cd Length: 455 Bit Score: 56.33 E-value: 1.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 187 VGKGQRALIVAPPRTGKTELMkelaqGITSNHPEVELIIL-LVDERPEEVTD----------MQRSVkgqVFSSTFDLP- 254
Cdd:PRK07960 172 VGRGQRMGLFAGSGVGKSVLL-----GMMARYTQADVIVVgLIGERGREVKDfienilgaegRARSV---VIAAPADVSp 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 255 ------ANNHIRIAELVLERakrrvemGKDVVVLLDSITRLARAYNAVT-----PSSGKVLSGGVDANAlhrPKRFFGAA 323
Cdd:PRK07960 244 llrmqgAAYATRIAEDFRDR-------GQHVLLIMDSLTRYAMAQREIAlaigePPATKGYPPSVFAKL---PALVERAG 313
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1339790512 324 RNIEEGGSLTIIATALIETGSRMDEvIFEEFKGTGNSEIVLARNIADRRIYPAFDILKSGTRKDNILLGKDRLTKV 399
Cdd:PRK07960 314 NGISGGGSITAFYTVLTEGDDQQDP-IADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALIDEQHYARV 388
|
|
| fliI |
PRK08472 |
flagellar protein export ATPase FliI; |
188-385 |
7.36e-08 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181439 [Multi-domain] Cd Length: 434 Bit Score: 54.31 E-value: 7.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 188 GKGQRALIVAPPRTGKTELMKELAQGitSNHPEVelIILLVDERPEEVTD-MQRSVKGQ------VFSSTFDLP------ 254
Cdd:PRK08472 155 GKGQKLGIFAGSGVGKSTLMGMIVKG--CLAPIK--VVALIGERGREIPEfIEKNLGGDlentviVVATSDDSPlmrkyg 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 255 ANNHIRIAELVLERakrrvemGKDVVVLLDSITRLARAYNAVTPSSGK-VLSGGVDANALHRPKRFFGAARNIEEGGSLT 333
Cdd:PRK08472 231 AFCAMSVAEYFKNQ-------GLDVLFIMDSVTRFAMAQREIGLALGEpPTSKGYPPSVLSLLPQLMERAGKEEGKGSIT 303
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1339790512 334 IIATALIEtGSRMDEVIFEEFKGTGNSEIVLARNIADRRIYPAFDILKSGTR 385
Cdd:PRK08472 304 AFFTVLVE-GDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINILNSASR 354
|
|
| PRK05922 |
PRK05922 |
type III secretion system ATPase; Validated |
157-333 |
4.17e-07 |
|
type III secretion system ATPase; Validated
Pssm-ID: 102061 [Multi-domain] Cd Length: 434 Bit Score: 51.83 E-value: 4.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 157 NLTPLFPDEQIKLEYEPTK---VTG-RMLDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPevelIILLVDERP 232
Cdd:PRK05922 120 HLKPLFSSPPSPMSRQPIQeifPTGiKAIDAFLTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTIN----VIALIGERG 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 233 EEVTD-MQRSVKGQVFSSTFDLPANNHIRIAELVLE-RAKRRV-----EMGKDVVVLLDSITRLARAYNAVTPSSGKVLS 305
Cdd:PRK05922 196 REVREyIEQHKEGLAAQRTIIIASPAHETAPTKVIAgRAAMTIaeyfrDQGHRVLFIMDSLSRWIAALQEVALARGETLS 275
|
170 180
....*....|....*....|....*....
gi 1339790512 306 G-GVDANALHRPKRFFGAARNiEEGGSLT 333
Cdd:PRK05922 276 AhHYAASVFHHVSEFTERAGN-NDKGSIT 303
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
189-342 |
1.21e-06 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 48.14 E-value: 1.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 189 KGQRALIVAPPRTGKTELMKELAQGITSNHPEVeliILLVDERPEEVTDMQRSVKGqvfsSTFDLPANNHIRIAELVLER 268
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGV---IYIDGEDILEEVLDQLLLII----VGGKKASGSGELRLRLALAL 73
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1339790512 269 AKRRvemgKDVVVLLDSITRLARAynavtpssgkvlsggvDANALHRPKRFFGAARNIEEGGSLTIIATALIET 342
Cdd:smart00382 74 ARKL----KPDVLILDEITSLLDA----------------EQEALLLLLEELRLLLLLKSEKNLTVILTTNDEK 127
|
|
| RecA-like_superfamily |
cd01120 |
RecA-like_NTPases; RecA-like NTPases. This superfamily includes the NTP binding domain of F1 ... |
194-349 |
1.43e-03 |
|
RecA-like_NTPases; RecA-like NTPases. This superfamily includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410865 [Multi-domain] Cd Length: 119 Bit Score: 38.25 E-value: 1.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1339790512 194 LIVAPPRTGKTELMKELAQGITSNhpeVELIILlvderpeevtdmqrsvkgqvfsstfdlpannhIRIAELVLERAKRRV 273
Cdd:cd01120 2 LITGPPGSGKTTLLLQFAEQALLS---DEPVIF--------------------------------ISFLDTILEAIEDLI 46
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1339790512 274 EMGKDVVVLLDSITRLARAYnavtpssgkvlSGGVDANALHRPKRFFGAARNieegGSLTIIATALIETGSRMDEV 349
Cdd:cd01120 47 EEKKLDIIIIDSLSSLARAS-----------QGDRSSELLEDLAKLLRAARN----TGITVIATIHSDKFDIDRGG 107
|
|
| PRK07165 |
PRK07165 |
ATP F0F1 synthase subunit alpha; |
180-204 |
1.80e-03 |
|
ATP F0F1 synthase subunit alpha;
Pssm-ID: 235951 [Multi-domain] Cd Length: 507 Bit Score: 40.73 E-value: 1.80e-03
10 20
....*....|....*....|....*
gi 1339790512 180 MLDLFSPVGKGQRALIVAPPRTGKT 204
Cdd:PRK07165 133 AIDLLIPIGKGQRELIIGDRQTGKT 157
|
|
| |
