NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1344861968|gb|AVE77533|]
View 

phenylacetic acid degradation operon negative regulatory protein PaaX [Klebsiella oxytoca]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
PaaX_C super family cl27888
PaaX-like protein C-terminal domain; This family contains proteins that are similar to the ...
24-307 3.10e-126

PaaX-like protein C-terminal domain; This family contains proteins that are similar to the product of the paaX gene of Escherichia coli. This protein is involved in the regulation of expression of a group of proteins known to participate in the metabolism of phenylacetic acid.


The actual alignment was detected with superfamily member TIGR02277:

Pssm-ID: 452792 [Multi-domain]  Cd Length: 280  Bit Score: 361.82  E-value: 3.10e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1344861968  24 SLIASLYGDALLQRGGEVWLGSVAALLEGLGFGERFVRTALFRLNKEEWLNVVRIGRRSFYRLSDKGLRLTRRAEHKIYR 103
Cdd:TIGR02277   1 SLIVTLYGDAIRPRGGAIWLGSLIEFLAGLGINERLVRTAVSRLVAQGWLQSERKGRRSFYSLTDKGRRRFAAAAQRIYD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1344861968 104 ASAPEWDGTWLLLLSEGLEKSTLAEVKKQLLWQGFGALAPSLLASPSQKLADVQSLLHEagvAENVICFEAHSPLALSRA 183
Cdd:TIGR02277  81 PPAPAWDGKWRLLLLSGPEESLRDELRKELVWSGFGLLAPSLWVTPSPLPEQVETLLEK---YDISPAVHFRCEDAAGMG 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1344861968 184 ALRARVEECWHLTEQNSMYDAFISLFRPLLPLLRDCEPaELTPERCFQIQLLLIHFYRRVVLKDPLLPEELLPAHWAGQT 263
Cdd:TIGR02277 158 ELKALAEKCWDLDEIADAYLAFIQKFGPLYVLLKNKAG-ELSPAAAFVARLLLVHEYRRVVLRDPLLPEELLPADWPGDA 236
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1344861968 264 ARQLCINIYQRVAPGALAFVGEKGESSVGELPAPGPLYFQRFGG 307
Cdd:TIGR02277 237 ARHLCARIYRTLAPPAERFLDSVGATENGPLPKAKELNFLRFGG 280
 
Name Accession Description Interval E-value
PaaX_trns_reg TIGR02277
phenylacetic acid degradation operon negative regulatory protein PaaX; This transcriptional ...
24-307 3.10e-126

phenylacetic acid degradation operon negative regulatory protein PaaX; This transcriptional regulator is always found in association with operons believed to be involved in the degradation of phenylacetic acid. The gene product has been shown to bind to the promoter sites and repress their transcription. [Regulatory functions, DNA interactions]


Pssm-ID: 274064 [Multi-domain]  Cd Length: 280  Bit Score: 361.82  E-value: 3.10e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1344861968  24 SLIASLYGDALLQRGGEVWLGSVAALLEGLGFGERFVRTALFRLNKEEWLNVVRIGRRSFYRLSDKGLRLTRRAEHKIYR 103
Cdd:TIGR02277   1 SLIVTLYGDAIRPRGGAIWLGSLIEFLAGLGINERLVRTAVSRLVAQGWLQSERKGRRSFYSLTDKGRRRFAAAAQRIYD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1344861968 104 ASAPEWDGTWLLLLSEGLEKSTLAEVKKQLLWQGFGALAPSLLASPSQKLADVQSLLHEagvAENVICFEAHSPLALSRA 183
Cdd:TIGR02277  81 PPAPAWDGKWRLLLLSGPEESLRDELRKELVWSGFGLLAPSLWVTPSPLPEQVETLLEK---YDISPAVHFRCEDAAGMG 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1344861968 184 ALRARVEECWHLTEQNSMYDAFISLFRPLLPLLRDCEPaELTPERCFQIQLLLIHFYRRVVLKDPLLPEELLPAHWAGQT 263
Cdd:TIGR02277 158 ELKALAEKCWDLDEIADAYLAFIQKFGPLYVLLKNKAG-ELSPAAAFVARLLLVHEYRRVVLRDPLLPEELLPADWPGDA 236
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1344861968 264 ARQLCINIYQRVAPGALAFVGEKGESSVGELPAPGPLYFQRFGG 307
Cdd:TIGR02277 237 ARHLCARIYRTLAPPAERFLDSVGATENGPLPKAKELNFLRFGG 280
PaaX COG3327
DNA-binding transcriptional regulator PaaX (phenylacetic acid degradation) [Transcription];
9-285 1.34e-99

DNA-binding transcriptional regulator PaaX (phenylacetic acid degradation) [Transcription];


Pssm-ID: 442556 [Multi-domain]  Cd Length: 281  Bit Score: 294.12  E-value: 1.34e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1344861968   9 TFIQQAVAAMPISGTSLIASLYGDALLQRGGEVWLGSVAALLEGLGFGERFVRTALFRLNKEEWLNVVRIGRRSFYRLSD 88
Cdd:COG3327     3 PAVDDDLDQRPMRARSLLFTLYGDYLRPRGGWIWLGSLVRLLEPLGVSERAVRTALSRLVKRGWLESERRGRRSGYRLTP 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1344861968  89 KGLRLTRRAEHKIYRASAPEWDGTWLLLLSE--GLEKSTLAEVKKQLLWQGFGALAPSLLASPSQKLADVQSLLHEAGVA 166
Cdd:COG3327    83 RGRRRLEEGDRRIYAFRPPTWDGRWTLVVFSvpESERELRHRLRRELTWLGFGTLAPGVWIAPGPLAEAVRELLAELGLA 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1344861968 167 ENVICFEAHsplALSRAALRARVEECWHLTEQNSMYDAFISlfrPLLPLLRDCEPAELTPERCFQIQLLLIHFYRRVVLK 246
Cdd:COG3327   163 DYVTVFRAE---HLGPGDLAELVARAWDLDELAARYREFLA---RFRPLLEALRAGALDPEEAFALRTLLVHEWRRFLFR 236
                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1344861968 247 DPLLPEELLPAHWAGQTARQLCINIYQRVAPGALAFVGE 285
Cdd:COG3327   237 DPGLPAELLPADWPGARARELFRELYARLAPPAERHVDE 275
PaaX_C pfam08223
PaaX-like protein C-terminal domain; This family contains proteins that are similar to the ...
185-283 1.36e-30

PaaX-like protein C-terminal domain; This family contains proteins that are similar to the product of the paaX gene of Escherichia coli. This protein is involved in the regulation of expression of a group of proteins known to participate in the metabolism of phenylacetic acid.


Pssm-ID: 429872 [Multi-domain]  Cd Length: 99  Bit Score: 110.87  E-value: 1.36e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1344861968 185 LRARVEECWHLTEQNSMYDAFISLFRPLLPLLRDCEPaeLTPERCFQIQLLLIHFYRRVVLKDPLLPEELLPAHWAGQTA 264
Cdd:pfam08223   1 LRALVRRCWDLDELAAAYREFLAEFRPLLLALLAREP--LTPEEAFLLRTLLVHEYRRFLFRDPGLPEELLPPDWPGAAA 78
                          90
                  ....*....|....*....
gi 1344861968 265 RQLCINIYQRVAPGALAFV 283
Cdd:pfam08223  79 RALFRNLYERLRPAAERFL 97
 
Name Accession Description Interval E-value
PaaX_trns_reg TIGR02277
phenylacetic acid degradation operon negative regulatory protein PaaX; This transcriptional ...
24-307 3.10e-126

phenylacetic acid degradation operon negative regulatory protein PaaX; This transcriptional regulator is always found in association with operons believed to be involved in the degradation of phenylacetic acid. The gene product has been shown to bind to the promoter sites and repress their transcription. [Regulatory functions, DNA interactions]


Pssm-ID: 274064 [Multi-domain]  Cd Length: 280  Bit Score: 361.82  E-value: 3.10e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1344861968  24 SLIASLYGDALLQRGGEVWLGSVAALLEGLGFGERFVRTALFRLNKEEWLNVVRIGRRSFYRLSDKGLRLTRRAEHKIYR 103
Cdd:TIGR02277   1 SLIVTLYGDAIRPRGGAIWLGSLIEFLAGLGINERLVRTAVSRLVAQGWLQSERKGRRSFYSLTDKGRRRFAAAAQRIYD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1344861968 104 ASAPEWDGTWLLLLSEGLEKSTLAEVKKQLLWQGFGALAPSLLASPSQKLADVQSLLHEagvAENVICFEAHSPLALSRA 183
Cdd:TIGR02277  81 PPAPAWDGKWRLLLLSGPEESLRDELRKELVWSGFGLLAPSLWVTPSPLPEQVETLLEK---YDISPAVHFRCEDAAGMG 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1344861968 184 ALRARVEECWHLTEQNSMYDAFISLFRPLLPLLRDCEPaELTPERCFQIQLLLIHFYRRVVLKDPLLPEELLPAHWAGQT 263
Cdd:TIGR02277 158 ELKALAEKCWDLDEIADAYLAFIQKFGPLYVLLKNKAG-ELSPAAAFVARLLLVHEYRRVVLRDPLLPEELLPADWPGDA 236
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1344861968 264 ARQLCINIYQRVAPGALAFVGEKGESSVGELPAPGPLYFQRFGG 307
Cdd:TIGR02277 237 ARHLCARIYRTLAPPAERFLDSVGATENGPLPKAKELNFLRFGG 280
PaaX COG3327
DNA-binding transcriptional regulator PaaX (phenylacetic acid degradation) [Transcription];
9-285 1.34e-99

DNA-binding transcriptional regulator PaaX (phenylacetic acid degradation) [Transcription];


Pssm-ID: 442556 [Multi-domain]  Cd Length: 281  Bit Score: 294.12  E-value: 1.34e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1344861968   9 TFIQQAVAAMPISGTSLIASLYGDALLQRGGEVWLGSVAALLEGLGFGERFVRTALFRLNKEEWLNVVRIGRRSFYRLSD 88
Cdd:COG3327     3 PAVDDDLDQRPMRARSLLFTLYGDYLRPRGGWIWLGSLVRLLEPLGVSERAVRTALSRLVKRGWLESERRGRRSGYRLTP 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1344861968  89 KGLRLTRRAEHKIYRASAPEWDGTWLLLLSE--GLEKSTLAEVKKQLLWQGFGALAPSLLASPSQKLADVQSLLHEAGVA 166
Cdd:COG3327    83 RGRRRLEEGDRRIYAFRPPTWDGRWTLVVFSvpESERELRHRLRRELTWLGFGTLAPGVWIAPGPLAEAVRELLAELGLA 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1344861968 167 ENVICFEAHsplALSRAALRARVEECWHLTEQNSMYDAFISlfrPLLPLLRDCEPAELTPERCFQIQLLLIHFYRRVVLK 246
Cdd:COG3327   163 DYVTVFRAE---HLGPGDLAELVARAWDLDELAARYREFLA---RFRPLLEALRAGALDPEEAFALRTLLVHEWRRFLFR 236
                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1344861968 247 DPLLPEELLPAHWAGQTARQLCINIYQRVAPGALAFVGE 285
Cdd:COG3327   237 DPGLPAELLPADWPGARARELFRELYARLAPPAERHVDE 275
PaaX_C pfam08223
PaaX-like protein C-terminal domain; This family contains proteins that are similar to the ...
185-283 1.36e-30

PaaX-like protein C-terminal domain; This family contains proteins that are similar to the product of the paaX gene of Escherichia coli. This protein is involved in the regulation of expression of a group of proteins known to participate in the metabolism of phenylacetic acid.


Pssm-ID: 429872 [Multi-domain]  Cd Length: 99  Bit Score: 110.87  E-value: 1.36e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1344861968 185 LRARVEECWHLTEQNSMYDAFISLFRPLLPLLRDCEPaeLTPERCFQIQLLLIHFYRRVVLKDPLLPEELLPAHWAGQTA 264
Cdd:pfam08223   1 LRALVRRCWDLDELAAAYREFLAEFRPLLLALLAREP--LTPEEAFLLRTLLVHEYRRFLFRDPGLPEELLPPDWPGAAA 78
                          90
                  ....*....|....*....
gi 1344861968 265 RQLCINIYQRVAPGALAFV 283
Cdd:pfam08223  79 RALFRNLYERLRPAAERFL 97
PaaX pfam07848
PaaX-like protein; This family contains proteins that are similar to the product of the paaX ...
21-90 4.19e-24

PaaX-like protein; This family contains proteins that are similar to the product of the paaX gene of Escherichia coli. This protein is involved in the regulation of expression of a group of proteins known to participate in the metabolism of phenylacetic acid. In fact, some members of this family are annotated by InterPro as containing a winged helix DNA-binding domain (Interpro:IPR009058).


Pssm-ID: 285132 [Multi-domain]  Cd Length: 70  Bit Score: 93.19  E-value: 4.19e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1344861968  21 SGTSLIASLYGDALLQRGGEVWLGSVAALLEGLGFGERFVRTALFRLNKEEWLNVVRIGRRSFYRLSDKG 90
Cdd:pfam07848   1 RARSLIFTLYGDYLGPHGGAIWLGSLIRLLAGFGISERTVRTALSRLVKAGWLVRERTGRRSYYRLSDRG 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH