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Conserved domains on  [gi|1352184798|gb|AVI55814|]
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DUF2543 domain-containing protein [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

YmjA family protein( domain architecture ID 10566752)

YmjA family protein is a DUF2543 domain-containing protein similar to Escherichia coli protein YmjA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2543 pfam10820
Protein of unknown function (DUF2543); This family of proteins with unknown function appear to ...
 1-81 1.05e-45

Protein of unknown function (DUF2543); This family of proteins with unknown function appear to be restricted to Enterobacteriaceae. The family has a highly conserved sequence.


:

Pssm-ID: 431510  Cd Length: 81  Bit Score: 140.84  E-value: 1.05e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1352184798  1 MNHDIPLKYFDIADEYATECAEPVAEAERTPLAHYFQLLLTRLMNNEEISEEAQHEMAAEAGINPVRIDEIAEFLNQWGN 80
Cdd:pfam10820  1 MNNDVPLKYYDIADEYATESAEPVEEQERDGLAHYFQLLITRLTNNEEISEEAQKEMAAEAGINEQRIDDIAEFLNQWGN 80


                 .
gi 1352184798 81 E 81
Cdd:pfam10820 81 E 81
 
Name Accession Description Interval E-value
DUF2543 pfam10820
Protein of unknown function (DUF2543); This family of proteins with unknown function appear to ...
 1-81 1.05e-45

Protein of unknown function (DUF2543); This family of proteins with unknown function appear to be restricted to Enterobacteriaceae. The family has a highly conserved sequence.


Pssm-ID: 431510  Cd Length: 81  Bit Score: 140.84  E-value: 1.05e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1352184798  1 MNHDIPLKYFDIADEYATECAEPVAEAERTPLAHYFQLLLTRLMNNEEISEEAQHEMAAEAGINPVRIDEIAEFLNQWGN 80
Cdd:pfam10820  1 MNNDVPLKYYDIADEYATESAEPVEEQERDGLAHYFQLLITRLTNNEEISEEAQKEMAAEAGINEQRIDDIAEFLNQWGN 80


                 .
gi 1352184798 81 E 81
Cdd:pfam10820 81 E 81
 
Name Accession Description Interval E-value
DUF2543 pfam10820
Protein of unknown function (DUF2543); This family of proteins with unknown function appear to ...
 1-81 1.05e-45

Protein of unknown function (DUF2543); This family of proteins with unknown function appear to be restricted to Enterobacteriaceae. The family has a highly conserved sequence.


Pssm-ID: 431510  Cd Length: 81  Bit Score: 140.84  E-value: 1.05e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1352184798  1 MNHDIPLKYFDIADEYATECAEPVAEAERTPLAHYFQLLLTRLMNNEEISEEAQHEMAAEAGINPVRIDEIAEFLNQWGN 80
Cdd:pfam10820  1 MNNDVPLKYYDIADEYATESAEPVEEQERDGLAHYFQLLITRLTNNEEISEEAQKEMAAEAGINEQRIDDIAEFLNQWGN 80


                 .
gi 1352184798 81 E 81
Cdd:pfam10820 81 E 81
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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