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Conserved domains on  [gi|1359192525|gb|AVN49855|]
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Hok/Gef family protein [Serratia marcescens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HOK_GEF super family cl27487
Hok/gef family;
2-46 4.95e-12

Hok/gef family;


The actual alignment was detected with superfamily member PRK09759:

Pssm-ID: 452751  Cd Length: 50  Bit Score: 53.39  E-value: 4.95e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 1359192525  2 MPNKRSLLKLVVICATVISLAWITRSTLCELRIRSGNTEVAAILA 46
Cdd:PRK09759   1 MPQKYRLLSLIVICFTLLFFTWMIRDSLCELHIKQGSYELAAFLA 45
 
Name Accession Description Interval E-value
PRK09759 PRK09759
type I toxin-antitoxin system toxin HokA;
2-46 4.95e-12

type I toxin-antitoxin system toxin HokA;


Pssm-ID: 182063  Cd Length: 50  Bit Score: 53.39  E-value: 4.95e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 1359192525  2 MPNKRSLLKLVVICATVISLAWITRSTLCELRIRSGNTEVAAILA 46
Cdd:PRK09759   1 MPQKYRLLSLIVICFTLLFFTWMIRDSLCELHIKQGSYELAAFLA 45
HOK_GEF pfam01848
Hok/gef family;
8-47 4.79e-10

Hok/gef family;


Pssm-ID: 426473  Cd Length: 41  Bit Score: 48.14  E-value: 4.79e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 1359192525  8 LLKLVVICATVISLAWITRSTLCELRIRSGNTEVAAILAY 47
Cdd:pfam01848  2 LVALIVICITVLLFTLVTRKSLCELRIRQGQTEVAAFLAC 41
 
Name Accession Description Interval E-value
PRK09759 PRK09759
type I toxin-antitoxin system toxin HokA;
2-46 4.95e-12

type I toxin-antitoxin system toxin HokA;


Pssm-ID: 182063  Cd Length: 50  Bit Score: 53.39  E-value: 4.95e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 1359192525  2 MPNKRSLLKLVVICATVISLAWITRSTLCELRIRSGNTEVAAILA 46
Cdd:PRK09759   1 MPQKYRLLSLIVICFTLLFFTWMIRDSLCELHIKQGSYELAAFLA 45
PRK09738 PRK09738
small toxic polypeptide; Provisional
 2-49 8.84e-11

small toxic polypeptide; Provisional


Pssm-ID: 182055  Cd Length: 52  Bit Score: 50.56  E-value: 8.84e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 1359192525  2 MPNKRSLLKLVVICATVISLAWITRSTLCELRIRSGNTEVAAILAYES 49
Cdd:PRK09738   3 LPRSPLVWCVLIVCLTLLIFTYLTRKSLCELRYRDGDREVAAFMAYES 50
HOK_GEF pfam01848
Hok/gef family;
8-47 4.79e-10

Hok/gef family;


Pssm-ID: 426473  Cd Length: 41  Bit Score: 48.14  E-value: 4.79e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 1359192525  8 LLKLVVICATVISLAWITRSTLCELRIRSGNTEVAAILAY 47
Cdd:pfam01848  2 LVALIVICITVLLFTLVTRKSLCELRIRQGQTEVAAFLAC 41
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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