NCBI Conserved Domain Search

Conserved domains on [gi|1398303517|gb|AWQ71478|]

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hypothetical protein CSC53_1939 [Staphylococcus aureus]

Protein Classification

DUF1128 domain-containing protein( domain architecture ID 10534942)

DUF1128 domain-containing protein similar to Staphylococcus haemolyticus SH1076

Graphical summary

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List of domain hits

Name

Accession

Description

Interval

E-value

DUF1128

pfam06569

Protein of unknown function (DUF1128); This family consists of several short, hypothetical ...

1-67

2.80e-22

Protein of unknown function (DUF1128); This family consists of several short, hypothetical bacterial proteins of unknown function.

Pssm-ID: 399518 Cd Length: 71 Bit Score: 80.79 E-value: 2.80e-22

                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1398303517  1 MAMTNEE----KVLAIREKLNIVNQGLLDPEKYKNANEEELTDIYDFVQSRERLSPSEVTAIADALGQLRH 67
Cdd:pfam06569  1 LSEPSQEnleyMIEEIKEKLNMVNGAAMKPEDFSLDKYEDLKDLYEMVMKKDSFSPSEMQAIVEELGRLRK 71

Name

Accession

Description

Interval

E-value

DUF1128

pfam06569

Protein of unknown function (DUF1128); This family consists of several short, hypothetical ...

1-67

2.80e-22

Protein of unknown function (DUF1128); This family consists of several short, hypothetical bacterial proteins of unknown function.

Pssm-ID: 399518 Cd Length: 71 Bit Score: 80.79 E-value: 2.80e-22

                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1398303517  1 MAMTNEE----KVLAIREKLNIVNQGLLDPEKYKNANEEELTDIYDFVQSRERLSPSEVTAIADALGQLRH 67
Cdd:pfam06569  1 LSEPSQEnleyMIEEIKEKLNMVNGAAMKPEDFSLDKYEDLKDLYEMVMKKDSFSPSEMQAIVEELGRLRK 71

YfkK

COG4840

Uncharacterized conserved protein YfkK, UPF0435 family [Function unknown];

11-66

2.33e-16

Uncharacterized conserved protein YfkK, UPF0435 family [Function unknown];

Pssm-ID: 443868 Cd Length: 74 Bit Score: 65.72 E-value: 2.33e-16

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 1398303517 11 AIREKLNIVNQGLLDPEKYKNANEEELTDIYDFVQSRERLSPSEVTAIADALGQLR 66
Cdd:COG4840   17 EIKDKLRMVNASAMDPEDFDLEKYEDLKDLYDMVMKKNQFSPSEMQAIAEELGSLR 72

Name

Accession

Description

Interval

E-value

DUF1128

pfam06569

Protein of unknown function (DUF1128); This family consists of several short, hypothetical ...

1-67

2.80e-22

Protein of unknown function (DUF1128); This family consists of several short, hypothetical bacterial proteins of unknown function.

Pssm-ID: 399518 Cd Length: 71 Bit Score: 80.79 E-value: 2.80e-22

                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1398303517  1 MAMTNEE----KVLAIREKLNIVNQGLLDPEKYKNANEEELTDIYDFVQSRERLSPSEVTAIADALGQLRH 67
Cdd:pfam06569  1 LSEPSQEnleyMIEEIKEKLNMVNGAAMKPEDFSLDKYEDLKDLYEMVMKKDSFSPSEMQAIVEELGRLRK 71

YfkK

COG4840

Uncharacterized conserved protein YfkK, UPF0435 family [Function unknown];

11-66

2.33e-16

Uncharacterized conserved protein YfkK, UPF0435 family [Function unknown];

Pssm-ID: 443868 Cd Length: 74 Bit Score: 65.72 E-value: 2.33e-16

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 1398303517 11 AIREKLNIVNQGLLDPEKYKNANEEELTDIYDFVQSRERLSPSEVTAIADALGQLR 66
Cdd:COG4840   17 EIKDKLRMVNASAMDPEDFDLEKYEDLKDLYDMVMKKNQFSPSEMQAIAEELGSLR 72

Blast search parameters

Data Source:	Precalculated data, version = cdd.v.3.21
Preset Options:	Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01