|
Name |
Accession |
Description |
Interval |
E-value |
| IAT_beta |
pfam11924 |
Inverse autotransporter, beta-domain; This is a family of beta-barrel porin-like outer ... |
171-442 |
1.26e-109 |
|
Inverse autotransporter, beta-domain; This is a family of beta-barrel porin-like outer membrane proteins from enteropathogenic Gram-negative bacteria. Intimins and invasins are virulence factors produced by pathogenic Gram-negative bacteria. They carry C-terminal extracellular passenger domains that are involved in adhesion to host cells and N-terminal beta domains that are embedded in the outer membrane. This family represents the beta-barrel porin-like domain in the outer membrane that can be found in intimins, invasins and some inverse autotransporters.
:
Pssm-ID: 432192 [Multi-domain] Cd Length: 279 Bit Score: 334.67 E-value: 1.26e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 171 ASLGSQLQSRSLNGD---YAKDTALGIAGNQASSQLQAWLQHYGTA--EVNLQSGNNFDGSSLDFLLPFYDSEKMLAFGQ 245
Cdd:pfam11924 3 ASQIGSLLSEDDTGEqrnYAKSQIKDAVLSEANSQLESWLSPFGNAqvQLGVDSDGSFTGSSLDLLVPLYDNDRGLLFSQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 246 VGARYIDSRFTANLGAGQRFFLPANMLGYNVFIDQDFSGDNTRLGIGGEYWRDYFKSSVNGYFRMSGWHESYNKKDYDER 325
Cdd:pfam11924 83 LGLRRKDDRTTVNLGLGQRWFVDGWMLGANTFYDYDLTRSHSRAGVGAEAWRDYLKLSANYYFPLSGWKNSTDNNDYEER 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 326 PANGFDIRFNGYLPSYPALGAKLIYEQYYGDNVALFNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSM 405
Cdd:pfam11924 163 PANGWDVRAQGYLPAYPQLGASLKYEQYFGDEVDLFGDGKRQADPSAVTLGLNYTPVPLVTLSAEHKQGKGGKSDTQLGL 242
|
250 260 270
....*....|....*....|....*....|....*..
gi 1424836063 406 QFRYQFDKSWSQQIEPQYVNELRTLSGSRYDLVQRNN 442
Cdd:pfam11924 243 TLNYRFGVPLSKQLDPDNVAASRSLAGSRYDLVERNN 279
|
|
| BID_1 |
smart00634 |
Bacterial Ig-like domain (group 1); |
560-648 |
2.00e-21 |
|
Bacterial Ig-like domain (group 1);
:
Pssm-ID: 214751 [Multi-domain] Cd Length: 92 Bit Score: 89.31 E-value: 2.00e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 560 VTDFTADKTSAKADNADTITYTATVKK-NGVAQANVPVSFNIVSGTA-TLGANSAKTDANGKATVTLKSSTPGQVVVSAK 637
Cdd:smart00634 2 VTTLTADKDTAVANGSDAITLTATVTDaNGNPVAGQEVTFTTPSGGAlTLSKGTATTDANGIATVTLTSTTAGVYTVTAS 81
|
90
....*....|.
gi 1424836063 638 TAEMTSALNAS 648
Cdd:smart00634 82 LENGSSSVKQV 92
|
|
| TAD2 |
pfam18521 |
Transactivation domain 2; This is a N-terminal transactivation domain (TAD) domain 2 found in ... |
693-717 |
1.30e-12 |
|
Transactivation domain 2; This is a N-terminal transactivation domain (TAD) domain 2 found in p53 proteins. In p53 two TAD domains are found termed TAD1 (residues 1-39) and TAD2 (residues 40-61), both of which have been shown to be able to independently activate gene transcription and are intrinsically disordered protein domains that adopt a helical conformation for at least part of their length when bound. This inherent flexibility allows the TADs to adapt to and bind a broad range of proteins. This entry describes TAD2 which can independently interact with Taz2 domain of the histone acetyltransferase p300. It has also been shown to bind to OB-fold domain of replication protein 70 A (RPA) as well as the pleckstrin homology (PH) domain of the p62 and Tfb1 subunits of human and yeast TFIIH.
:
Pssm-ID: 375947 Cd Length: 25 Bit Score: 62.08 E-value: 1.30e-12
|
| P53_TAD |
pfam08563 |
P53 transactivation motif; The binding of the p53 transactivation domain by regulatory ... |
664-688 |
9.01e-09 |
|
P53 transactivation motif; The binding of the p53 transactivation domain by regulatory proteins regulates p53 transcription activation. This motif is comprised of a single amphipathic alpha helix and contains a highly conserved sequence.
:
Pssm-ID: 462520 Cd Length: 25 Bit Score: 51.40 E-value: 9.01e-09
|
| LysM |
pfam01476 |
LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety ... |
65-113 |
6.14e-04 |
|
LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
:
Pssm-ID: 396179 [Multi-domain] Cd Length: 43 Bit Score: 38.15 E-value: 6.14e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1424836063 65 YTLKTGETVADLSKSQDINLSTIWSLNkHLYSSesemmKAAPGQQIILP 113
Cdd:pfam01476 1 YTVKKGDTLSSIAKRYGITVEQLAELN-GLSSP-----NLYVGQKLKIP 43
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| IAT_beta |
pfam11924 |
Inverse autotransporter, beta-domain; This is a family of beta-barrel porin-like outer ... |
171-442 |
1.26e-109 |
|
Inverse autotransporter, beta-domain; This is a family of beta-barrel porin-like outer membrane proteins from enteropathogenic Gram-negative bacteria. Intimins and invasins are virulence factors produced by pathogenic Gram-negative bacteria. They carry C-terminal extracellular passenger domains that are involved in adhesion to host cells and N-terminal beta domains that are embedded in the outer membrane. This family represents the beta-barrel porin-like domain in the outer membrane that can be found in intimins, invasins and some inverse autotransporters.
Pssm-ID: 432192 [Multi-domain] Cd Length: 279 Bit Score: 334.67 E-value: 1.26e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 171 ASLGSQLQSRSLNGD---YAKDTALGIAGNQASSQLQAWLQHYGTA--EVNLQSGNNFDGSSLDFLLPFYDSEKMLAFGQ 245
Cdd:pfam11924 3 ASQIGSLLSEDDTGEqrnYAKSQIKDAVLSEANSQLESWLSPFGNAqvQLGVDSDGSFTGSSLDLLVPLYDNDRGLLFSQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 246 VGARYIDSRFTANLGAGQRFFLPANMLGYNVFIDQDFSGDNTRLGIGGEYWRDYFKSSVNGYFRMSGWHESYNKKDYDER 325
Cdd:pfam11924 83 LGLRRKDDRTTVNLGLGQRWFVDGWMLGANTFYDYDLTRSHSRAGVGAEAWRDYLKLSANYYFPLSGWKNSTDNNDYEER 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 326 PANGFDIRFNGYLPSYPALGAKLIYEQYYGDNVALFNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSM 405
Cdd:pfam11924 163 PANGWDVRAQGYLPAYPQLGASLKYEQYFGDEVDLFGDGKRQADPSAVTLGLNYTPVPLVTLSAEHKQGKGGKSDTQLGL 242
|
250 260 270
....*....|....*....|....*....|....*..
gi 1424836063 406 QFRYQFDKSWSQQIEPQYVNELRTLSGSRYDLVQRNN 442
Cdd:pfam11924 243 TLNYRFGVPLSKQLDPDNVAASRSLAGSRYDLVERNN 279
|
|
| PRK15318 |
PRK15318 |
intimin-like protein SinH; Provisional |
197-639 |
4.19e-93 |
|
intimin-like protein SinH; Provisional
Pssm-ID: 237943 [Multi-domain] Cd Length: 730 Bit Score: 306.49 E-value: 4.19e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 197 NQASSQLQAWLQHYGTAEVNLQSGN--NFDGSSLDFLLPFYDSEKMLAFGQVGARYIDSRFTANLGAGQRFFLPANMLGY 274
Cdd:PRK15318 95 STAQSYLEDTLSPYGKVRTNLSVGEggDLDGSSIDYFVPWYDNQSTVYFSQFSAQRKEDRTIGNIGLGVRQNFGKWLLGG 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 275 NVFIDQDFSGDNTRLGIGGEYWRDYFKSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGAKLIYEQYY 354
Cdd:PRK15318 175 NIFYDYDFTRGHRRLGLGTEAWTDYLKFSGNYYHPLSDWKDSEDFDFYEERPARGWDIRAEGWLPAYPQLGGKLVYEQYY 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 355 GDNVALFNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFRYQFDKSWSQQIEPQYVNELRTLSGSR 434
Cdd:PRK15318 255 GDEVALFGTDNLQKDPHAVTLGLKYQPVPLVTVGTDYKAGTGDNNDLSVNATLNYQFGTPLKDQLDPDNVKAAHSLMGSR 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 435 YDLVQRNNNIILEYKKQDILSLNIP-HDINGTEHSTQKIQLIVKSKYGLDRIVW-------------------DDSALRS 494
Cdd:PRK15318 335 HDFVDRNNFIVLEYKEKDPLDVTLWlKADATNEHPECVIKDTPEAAVGLEKCKWtinalinhhykivaaswqaKNNAART 414
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 495 QGGQIQHSGS---QSAQDYQAILPAYV-------QGGSNIYKVTARAYDRNGNSSNNVQLTITVLSNGQV---VDQVGVT 561
Cdd:PRK15318 415 LVMPVVKANAlteGNNNHWNLVLPAWQyasteeeQEALNTWRVRLALEDEKGNRQNSGVVEITVQQDRKIeliVNNIADV 494
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 562 DFT--ADKTSAKADNAD--------TITYTATVKKNG---VAQANVPVSFNIVSGTATLGANS----------AKTDANg 618
Cdd:PRK15318 495 DRSnhSHEASAQADGVDgvvmdldiTDSFGDNTDRNGntlPEDNMTPQLYDANDKKVTLTNKPcttetpcvfiASRDKE- 573
|
490 500
....*....|....*....|.
gi 1424836063 619 KATVTLKSSTPGQVVVSAKTA 639
Cdd:PRK15318 574 AGTVTLSSTLPGTFRWKAKAA 594
|
|
| Ve_IatC_Nterm |
NF040978 |
inverse autotransporter adhesin IatC N-terminal domain; The inverse autotransporter (type Ve ... |
169-645 |
6.22e-82 |
|
inverse autotransporter adhesin IatC N-terminal domain; The inverse autotransporter (type Ve secretion protein) IatC contains a central region that is variable in the number of repeats seen, and averages about 3000 amino acids in length. This HMM describes a mostly non-repetitive region N-teminal to the architectural differences from different repeat counts are seen. IatC can contribute to biofilm formation.
Pssm-ID: 468908 [Multi-domain] Cd Length: 1065 Bit Score: 282.85 E-value: 6.22e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 169 QAASLGSQ---LQSRSLNGDYAKDTALGIAGNQASSQLQAWLQHYGTAEVNLQSGNNFD--GSSLDFLLPFYDSEKMLAF 243
Cdd:NF040978 144 QVAEMAQQsgtLLARDMDSEQAASMARGWVASSASAQATDWLSRWGTARVSLGVDEDFSlkSSSFEFLHPWYETPDNLVF 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 244 GQVGARYIDSRFTANLGAGQRFFLPANMLGYNVFIDQDFSGDNTRLGIGGEYWRDYFKSSVNGYFRMSGWHESYN-KKDY 322
Cdd:NF040978 224 SQHTLHRTDDRTQTNHGIGWRYFTSSWMSGVNMFIDHDLTRYHTRTGMGVEYWRDYLKLSGNGYLRLSNWRSAPElDNDY 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 323 DERPANGFDIRFNGYLPSYPALGAKLIYEQYYGDNVALFNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLL 402
Cdd:NF040978 304 EARPANGWDLRAEGWLPAWPQLGGKLVYEQYYGDEVALFGKDERQNDPHAITAGLSYTPVPLISFSAEQRQGKQGENDTR 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 403 YSMQFRYQFDKSWSQQIEPQYVNELRTLSGSRYDLVQRNNNIILEYKKQDILSLNIPHDINGTEHSTQKIQLIVKSKYGL 482
Cdd:NF040978 384 IGMELTLQPGHSLQKQLDPAEVAARRSLAGSRYDLVDRNNNIVLEYRKKELVRLTLTDPLKGKPGEVKSLVSSLQTKYAL 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 483 DRIVWDDSALRSQGGQIQHSGsqsaQDYQAILPAY----VQGGSNIYKVTARAYDRNGNSSNNVQLTITVLSngqvvDQV 558
Cdd:NF040978 464 KGYDIEAAALQSAGGKVAVSG----KDIQVTIPPYrftaMPETDNTYPIAVTAEDSKGNFSRREESMVVVEK-----PTL 534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 559 GVTDFT--ADKTSAKADNADTITYTATVKKNGVAQANVPVSFNIVSGTATLGANSAKTDANGKATvtlksstpgQVVVSA 636
Cdd:NF040978 535 SLADSTlsVDLQILLADGKSISTLTYTARDSSGKPIPGMTLKTHAKGLQDFALSEWKDNGNGTYT---------QIVTAG 605
|
....*....
gi 1424836063 637 KTAEMTSAL 645
Cdd:NF040978 606 KTSGALSLM 614
|
|
| BID_1 |
smart00634 |
Bacterial Ig-like domain (group 1); |
560-648 |
2.00e-21 |
|
Bacterial Ig-like domain (group 1);
Pssm-ID: 214751 [Multi-domain] Cd Length: 92 Bit Score: 89.31 E-value: 2.00e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 560 VTDFTADKTSAKADNADTITYTATVKK-NGVAQANVPVSFNIVSGTA-TLGANSAKTDANGKATVTLKSSTPGQVVVSAK 637
Cdd:smart00634 2 VTTLTADKDTAVANGSDAITLTATVTDaNGNPVAGQEVTFTTPSGGAlTLSKGTATTDANGIATVTLTSTTAGVYTVTAS 81
|
90
....*....|.
gi 1424836063 638 TAEMTSALNAS 648
Cdd:smart00634 82 LENGSSSVKQV 92
|
|
| Big_1 |
pfam02369 |
Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like ... |
572-636 |
3.96e-17 |
|
Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial surface proteins such as intimins and invasins involved in pathogenicity.
Pssm-ID: 460541 [Multi-domain] Cd Length: 64 Bit Score: 76.05 E-value: 3.96e-17
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1424836063 572 ADNADTITYTATVK-KNGVAQANVPVSFNIVSGTATlgANSAKTDANGKATVTLKSSTPGQVVVSA 636
Cdd:pfam02369 1 ADGVDTNTVTATVTdANGNPVPGATVTFSASGGTLS--ASSGTTDANGQATVTLTSTKAGTVTVTA 64
|
|
| TAD2 |
pfam18521 |
Transactivation domain 2; This is a N-terminal transactivation domain (TAD) domain 2 found in ... |
693-717 |
1.30e-12 |
|
Transactivation domain 2; This is a N-terminal transactivation domain (TAD) domain 2 found in p53 proteins. In p53 two TAD domains are found termed TAD1 (residues 1-39) and TAD2 (residues 40-61), both of which have been shown to be able to independently activate gene transcription and are intrinsically disordered protein domains that adopt a helical conformation for at least part of their length when bound. This inherent flexibility allows the TADs to adapt to and bind a broad range of proteins. This entry describes TAD2 which can independently interact with Taz2 domain of the histone acetyltransferase p300. It has also been shown to bind to OB-fold domain of replication protein 70 A (RPA) as well as the pleckstrin homology (PH) domain of the p62 and Tfb1 subunits of human and yeast TFIIH.
Pssm-ID: 375947 Cd Length: 25 Bit Score: 62.08 E-value: 1.30e-12
|
| P53_TAD |
pfam08563 |
P53 transactivation motif; The binding of the p53 transactivation domain by regulatory ... |
664-688 |
9.01e-09 |
|
P53 transactivation motif; The binding of the p53 transactivation domain by regulatory proteins regulates p53 transcription activation. This motif is comprised of a single amphipathic alpha helix and contains a highly conserved sequence.
Pssm-ID: 462520 Cd Length: 25 Bit Score: 51.40 E-value: 9.01e-09
|
| LysM |
pfam01476 |
LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety ... |
65-113 |
6.14e-04 |
|
LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
Pssm-ID: 396179 [Multi-domain] Cd Length: 43 Bit Score: 38.15 E-value: 6.14e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1424836063 65 YTLKTGETVADLSKSQDINLSTIWSLNkHLYSSesemmKAAPGQQIILP 113
Cdd:pfam01476 1 YTVKKGDTLSSIAKRYGITVEQLAELN-GLSSP-----NLYVGQKLKIP 43
|
|
| LysM |
smart00257 |
Lysin motif; |
64-112 |
4.62e-03 |
|
Lysin motif;
Pssm-ID: 197609 [Multi-domain] Cd Length: 44 Bit Score: 35.50 E-value: 4.62e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1424836063 64 FYTLKTGETVADLSKSQDINLSTIWSLNKHLyssESEMMKaaPGQQIIL 112
Cdd:smart00257 1 TYTVKKGDTLSSIARRYGISVSDLLELNNIL---DPDNLQ--VGQKLKI 44
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| IAT_beta |
pfam11924 |
Inverse autotransporter, beta-domain; This is a family of beta-barrel porin-like outer ... |
171-442 |
1.26e-109 |
|
Inverse autotransporter, beta-domain; This is a family of beta-barrel porin-like outer membrane proteins from enteropathogenic Gram-negative bacteria. Intimins and invasins are virulence factors produced by pathogenic Gram-negative bacteria. They carry C-terminal extracellular passenger domains that are involved in adhesion to host cells and N-terminal beta domains that are embedded in the outer membrane. This family represents the beta-barrel porin-like domain in the outer membrane that can be found in intimins, invasins and some inverse autotransporters.
Pssm-ID: 432192 [Multi-domain] Cd Length: 279 Bit Score: 334.67 E-value: 1.26e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 171 ASLGSQLQSRSLNGD---YAKDTALGIAGNQASSQLQAWLQHYGTA--EVNLQSGNNFDGSSLDFLLPFYDSEKMLAFGQ 245
Cdd:pfam11924 3 ASQIGSLLSEDDTGEqrnYAKSQIKDAVLSEANSQLESWLSPFGNAqvQLGVDSDGSFTGSSLDLLVPLYDNDRGLLFSQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 246 VGARYIDSRFTANLGAGQRFFLPANMLGYNVFIDQDFSGDNTRLGIGGEYWRDYFKSSVNGYFRMSGWHESYNKKDYDER 325
Cdd:pfam11924 83 LGLRRKDDRTTVNLGLGQRWFVDGWMLGANTFYDYDLTRSHSRAGVGAEAWRDYLKLSANYYFPLSGWKNSTDNNDYEER 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 326 PANGFDIRFNGYLPSYPALGAKLIYEQYYGDNVALFNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSM 405
Cdd:pfam11924 163 PANGWDVRAQGYLPAYPQLGASLKYEQYFGDEVDLFGDGKRQADPSAVTLGLNYTPVPLVTLSAEHKQGKGGKSDTQLGL 242
|
250 260 270
....*....|....*....|....*....|....*..
gi 1424836063 406 QFRYQFDKSWSQQIEPQYVNELRTLSGSRYDLVQRNN 442
Cdd:pfam11924 243 TLNYRFGVPLSKQLDPDNVAASRSLAGSRYDLVERNN 279
|
|
| PRK15318 |
PRK15318 |
intimin-like protein SinH; Provisional |
197-639 |
4.19e-93 |
|
intimin-like protein SinH; Provisional
Pssm-ID: 237943 [Multi-domain] Cd Length: 730 Bit Score: 306.49 E-value: 4.19e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 197 NQASSQLQAWLQHYGTAEVNLQSGN--NFDGSSLDFLLPFYDSEKMLAFGQVGARYIDSRFTANLGAGQRFFLPANMLGY 274
Cdd:PRK15318 95 STAQSYLEDTLSPYGKVRTNLSVGEggDLDGSSIDYFVPWYDNQSTVYFSQFSAQRKEDRTIGNIGLGVRQNFGKWLLGG 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 275 NVFIDQDFSGDNTRLGIGGEYWRDYFKSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGAKLIYEQYY 354
Cdd:PRK15318 175 NIFYDYDFTRGHRRLGLGTEAWTDYLKFSGNYYHPLSDWKDSEDFDFYEERPARGWDIRAEGWLPAYPQLGGKLVYEQYY 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 355 GDNVALFNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFRYQFDKSWSQQIEPQYVNELRTLSGSR 434
Cdd:PRK15318 255 GDEVALFGTDNLQKDPHAVTLGLKYQPVPLVTVGTDYKAGTGDNNDLSVNATLNYQFGTPLKDQLDPDNVKAAHSLMGSR 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 435 YDLVQRNNNIILEYKKQDILSLNIP-HDINGTEHSTQKIQLIVKSKYGLDRIVW-------------------DDSALRS 494
Cdd:PRK15318 335 HDFVDRNNFIVLEYKEKDPLDVTLWlKADATNEHPECVIKDTPEAAVGLEKCKWtinalinhhykivaaswqaKNNAART 414
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 495 QGGQIQHSGS---QSAQDYQAILPAYV-------QGGSNIYKVTARAYDRNGNSSNNVQLTITVLSNGQV---VDQVGVT 561
Cdd:PRK15318 415 LVMPVVKANAlteGNNNHWNLVLPAWQyasteeeQEALNTWRVRLALEDEKGNRQNSGVVEITVQQDRKIeliVNNIADV 494
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 562 DFT--ADKTSAKADNAD--------TITYTATVKKNG---VAQANVPVSFNIVSGTATLGANS----------AKTDANg 618
Cdd:PRK15318 495 DRSnhSHEASAQADGVDgvvmdldiTDSFGDNTDRNGntlPEDNMTPQLYDANDKKVTLTNKPcttetpcvfiASRDKE- 573
|
490 500
....*....|....*....|.
gi 1424836063 619 KATVTLKSSTPGQVVVSAKTA 639
Cdd:PRK15318 574 AGTVTLSSTLPGTFRWKAKAA 594
|
|
| Ve_IatC_Nterm |
NF040978 |
inverse autotransporter adhesin IatC N-terminal domain; The inverse autotransporter (type Ve ... |
169-645 |
6.22e-82 |
|
inverse autotransporter adhesin IatC N-terminal domain; The inverse autotransporter (type Ve secretion protein) IatC contains a central region that is variable in the number of repeats seen, and averages about 3000 amino acids in length. This HMM describes a mostly non-repetitive region N-teminal to the architectural differences from different repeat counts are seen. IatC can contribute to biofilm formation.
Pssm-ID: 468908 [Multi-domain] Cd Length: 1065 Bit Score: 282.85 E-value: 6.22e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 169 QAASLGSQ---LQSRSLNGDYAKDTALGIAGNQASSQLQAWLQHYGTAEVNLQSGNNFD--GSSLDFLLPFYDSEKMLAF 243
Cdd:NF040978 144 QVAEMAQQsgtLLARDMDSEQAASMARGWVASSASAQATDWLSRWGTARVSLGVDEDFSlkSSSFEFLHPWYETPDNLVF 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 244 GQVGARYIDSRFTANLGAGQRFFLPANMLGYNVFIDQDFSGDNTRLGIGGEYWRDYFKSSVNGYFRMSGWHESYN-KKDY 322
Cdd:NF040978 224 SQHTLHRTDDRTQTNHGIGWRYFTSSWMSGVNMFIDHDLTRYHTRTGMGVEYWRDYLKLSGNGYLRLSNWRSAPElDNDY 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 323 DERPANGFDIRFNGYLPSYPALGAKLIYEQYYGDNVALFNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLL 402
Cdd:NF040978 304 EARPANGWDLRAEGWLPAWPQLGGKLVYEQYYGDEVALFGKDERQNDPHAITAGLSYTPVPLISFSAEQRQGKQGENDTR 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 403 YSMQFRYQFDKSWSQQIEPQYVNELRTLSGSRYDLVQRNNNIILEYKKQDILSLNIPHDINGTEHSTQKIQLIVKSKYGL 482
Cdd:NF040978 384 IGMELTLQPGHSLQKQLDPAEVAARRSLAGSRYDLVDRNNNIVLEYRKKELVRLTLTDPLKGKPGEVKSLVSSLQTKYAL 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 483 DRIVWDDSALRSQGGQIQHSGsqsaQDYQAILPAY----VQGGSNIYKVTARAYDRNGNSSNNVQLTITVLSngqvvDQV 558
Cdd:NF040978 464 KGYDIEAAALQSAGGKVAVSG----KDIQVTIPPYrftaMPETDNTYPIAVTAEDSKGNFSRREESMVVVEK-----PTL 534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 559 GVTDFT--ADKTSAKADNADTITYTATVKKNGVAQANVPVSFNIVSGTATLGANSAKTDANGKATvtlksstpgQVVVSA 636
Cdd:NF040978 535 SLADSTlsVDLQILLADGKSISTLTYTARDSSGKPIPGMTLKTHAKGLQDFALSEWKDNGNGTYT---------QIVTAG 605
|
....*....
gi 1424836063 637 KTAEMTSAL 645
Cdd:NF040978 606 KTSGALSLM 614
|
|
| PRK10177 |
PRK10177 |
YchO/YchP family invasin; |
118-547 |
1.38e-74 |
|
YchO/YchP family invasin;
Pssm-ID: 236661 Cd Length: 465 Bit Score: 249.28 E-value: 1.38e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 118 PFEYSA--LPLLGSAPLVAAGgvaghTNKLTKMSPDVTKSNMTDDkalnyaaqqAASLGSQLQSrslngdYAKDTALGIA 195
Cdd:PRK10177 36 PFDQNQdgLPDLGMAPENHDG-----EKHFAEMAKDFGEASMNDN---------GLDTGEQAKQ------FAFGKVRDAV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 196 GNQASSQLQAWLQHYGTAEVNLQSGN--NFDGSSLDFLLPFYDSEKMLAFGQVGARYIDSRFTANLGAGQRFFLPANMLG 273
Cdd:PRK10177 96 SQQVNQHVESWLSPWGNASVDLKVDNegHFTGSRGSWFVPLQDNDRYLTWSQLGLTQQDDGLVSNVGVGQRWAAGNWLLG 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 274 YNVFIDQDFSGDNTRLGIGGEYWRDYFKSSVNGYFRMSGWHESYNKKDydERPANGFDIRFNGYLPSYPALGAKLIYEQY 353
Cdd:PRK10177 176 YNTFYDNLLDENLQRAGFGAEAWGEYLRLSANYYQPFAAWHEQTATQE--QRMARGYDITAQMRLPFYQHLNTSVSVEQY 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 354 YGDNVALFNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFRYQFDKSWSQQIEPQYVNELRTLSGS 433
Cdd:PRK10177 254 FGDRVDLFNSGTGYHNPVALSLGLNYTPVPLVTVTAQHKQGESGESQNNLGLKLNYRFGVPLKKQLSAGEVAESQSLRGS 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 434 RYDLVQRNNNIILEYKKQDILSLNI---PHDINGTEHSTQKIQliVKSKYGLDRIVW--DDSALRSQGGQiqhsGSQSAQ 508
Cdd:PRK10177 334 RYDNPQRNNLPVMEYRQRKTLTVFLatpPWDLQPGETVPLKLQ--IRSRHGIRQLSWqgDTQALSLTPGA----DANSAE 407
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 1424836063 509 DYQAILPAY--VQGGSNIYKVTARAYDRNGN--SSNNVQLTIT 547
Cdd:PRK10177 408 GWTIIMPAWdnGEGASNRWRLSVVVEDNQGQrvSSNEITLTLV 450
|
|
| BID_1 |
smart00634 |
Bacterial Ig-like domain (group 1); |
560-648 |
2.00e-21 |
|
Bacterial Ig-like domain (group 1);
Pssm-ID: 214751 [Multi-domain] Cd Length: 92 Bit Score: 89.31 E-value: 2.00e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424836063 560 VTDFTADKTSAKADNADTITYTATVKK-NGVAQANVPVSFNIVSGTA-TLGANSAKTDANGKATVTLKSSTPGQVVVSAK 637
Cdd:smart00634 2 VTTLTADKDTAVANGSDAITLTATVTDaNGNPVAGQEVTFTTPSGGAlTLSKGTATTDANGIATVTLTSTTAGVYTVTAS 81
|
90
....*....|.
gi 1424836063 638 TAEMTSALNAS 648
Cdd:smart00634 82 LENGSSSVKQV 92
|
|
| Big_1 |
pfam02369 |
Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like ... |
572-636 |
3.96e-17 |
|
Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial surface proteins such as intimins and invasins involved in pathogenicity.
Pssm-ID: 460541 [Multi-domain] Cd Length: 64 Bit Score: 76.05 E-value: 3.96e-17
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1424836063 572 ADNADTITYTATVK-KNGVAQANVPVSFNIVSGTATlgANSAKTDANGKATVTLKSSTPGQVVVSA 636
Cdd:pfam02369 1 ADGVDTNTVTATVTdANGNPVPGATVTFSASGGTLS--ASSGTTDANGQATVTLTSTKAGTVTVTA 64
|
|
| TAD2 |
pfam18521 |
Transactivation domain 2; This is a N-terminal transactivation domain (TAD) domain 2 found in ... |
693-717 |
1.30e-12 |
|
Transactivation domain 2; This is a N-terminal transactivation domain (TAD) domain 2 found in p53 proteins. In p53 two TAD domains are found termed TAD1 (residues 1-39) and TAD2 (residues 40-61), both of which have been shown to be able to independently activate gene transcription and are intrinsically disordered protein domains that adopt a helical conformation for at least part of their length when bound. This inherent flexibility allows the TADs to adapt to and bind a broad range of proteins. This entry describes TAD2 which can independently interact with Taz2 domain of the histone acetyltransferase p300. It has also been shown to bind to OB-fold domain of replication protein 70 A (RPA) as well as the pleckstrin homology (PH) domain of the p62 and Tfb1 subunits of human and yeast TFIIH.
Pssm-ID: 375947 Cd Length: 25 Bit Score: 62.08 E-value: 1.30e-12
|
| P53_TAD |
pfam08563 |
P53 transactivation motif; The binding of the p53 transactivation domain by regulatory ... |
664-688 |
9.01e-09 |
|
P53 transactivation motif; The binding of the p53 transactivation domain by regulatory proteins regulates p53 transcription activation. This motif is comprised of a single amphipathic alpha helix and contains a highly conserved sequence.
Pssm-ID: 462520 Cd Length: 25 Bit Score: 51.40 E-value: 9.01e-09
|
| LysM |
pfam01476 |
LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety ... |
65-113 |
6.14e-04 |
|
LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
Pssm-ID: 396179 [Multi-domain] Cd Length: 43 Bit Score: 38.15 E-value: 6.14e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1424836063 65 YTLKTGETVADLSKSQDINLSTIWSLNkHLYSSesemmKAAPGQQIILP 113
Cdd:pfam01476 1 YTVKKGDTLSSIAKRYGITVEQLAELN-GLSSP-----NLYVGQKLKIP 43
|
|
| LysM |
smart00257 |
Lysin motif; |
64-112 |
4.62e-03 |
|
Lysin motif;
Pssm-ID: 197609 [Multi-domain] Cd Length: 44 Bit Score: 35.50 E-value: 4.62e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1424836063 64 FYTLKTGETVADLSKSQDINLSTIWSLNKHLyssESEMMKaaPGQQIIL 112
Cdd:smart00257 1 TYTVKKGDTLSSIARRYGISVSDLLELNNIL---DPDNLQ--VGQKLKI 44
|
|
| Big_3_5 |
pfam16640 |
Bacterial Ig-like domain (group 3); This family consists of bacterial domains with an Ig-like ... |
576-636 |
6.55e-03 |
|
Bacterial Ig-like domain (group 3); This family consists of bacterial domains with an Ig-like fold.
Pssm-ID: 406933 [Multi-domain] Cd Length: 90 Bit Score: 36.45 E-value: 6.55e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1424836063 576 DTITYTATVKKNGVAQANVPVSFniVSGTATLGANSAkTDANGKATVTLKSSTPGQVVVSA 636
Cdd:pfam16640 8 QSVTLTATVTPASGGTPTGTVTF--TDGGTVLGTAVL-VSGNGVATLTTTALAAGTHTITA 65
|
|
| |
