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type III secretion protein [Vibrio anguillarum]
Protein Classification
EscU/YscU/HrcU family type III secretion system export apparatus switch protein ( domain architecture ID 11114185 )
EscU/YscU/HrcU family type III secretion system export apparatus switch protein similar to Buchnera aphidicola flagellar biosynthesis protein FlhB, which may be involved in the export of flagellum proteins
List of domain hits
Name
Accession
Description
Interval
E-value
Bac_export_2
pfam01312 FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, ...
7-334
3.50e-69
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.
Pssm-ID: 460157
Cd Length: 338
Bit Score: 219.62
E-value: 3.50e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 7 K KYP PT E KKLRD LKK KGQ FP K TELAEPTLE L V A FA L IFSGMLFLMF E HND E W F EVI L YA D TQVGFHLVVSV L SLCIGSIF 86
Cdd:pfam01312 2 K TEE PT P KKLRD ARE KGQ VA K SRELTSAAV L L A GL L ALLFLGPFLL E RLA E L F RSV L SF D RAADPAALLAL L LALLLELL 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 87 MIK L ------- VM A VINWV L INSTVI ST ES L GF K IE K IH P VT G F K N IF GIEA L SRA L RKV L ELLFLLFLLKY V FDITGG E 159
Cdd:pfam01312 82 LLL L plllvll LA A LLANL L QVGFLF ST KA L KP K FS K LN P IS G L K R IF SLRS L VEL L KSL L KVAVVGAVAYL V LRGNLP E 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 160 L NM L KETN ------ NSS D F L Y KL MFYIAFVSMLYVVY gvcvgcv D FLVE R YH F H KK NR MT FT E M K N E M KE T EG S PEIK SE 233
Cdd:pfam01312 162 L LA L ADLP leaala LLG D L L L KL LLAVLLALLVIAAI ------- D YPYQ R WQ F E KK LK MT KQ E V K D E Y KE S EG D PEIK GR 234
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 234 RKRKM RE V - MDAP M VKGRRPTFALA NPTH IL V PIC YD RNIDR APVV LQICT D S LA QEE R KRLQ E MN VPI I EN K PLARA F Y 312
Cdd:pfam01312 235 IRQLQ RE M a RRRM M AEVPKADVVIT NPTH YA V ALK YD PGKMP APVV VAKGA D E LA LRI R EIAR E HG VPI V EN P PLARA L Y 314
330 340
....*....|....*....|..
gi 1447617678 313 RKMKN G E d F IP K E F Y RD VA II L 334
Cdd:pfam01312 315 ATVEV G Q - E IP E E L Y QA VA EV L 335
Name
Accession
Description
Interval
E-value
Bac_export_2
pfam01312 FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, ...
7-334
3.50e-69
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.
Pssm-ID: 460157
Cd Length: 338
Bit Score: 219.62
E-value: 3.50e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 7 K KYP PT E KKLRD LKK KGQ FP K TELAEPTLE L V A FA L IFSGMLFLMF E HND E W F EVI L YA D TQVGFHLVVSV L SLCIGSIF 86
Cdd:pfam01312 2 K TEE PT P KKLRD ARE KGQ VA K SRELTSAAV L L A GL L ALLFLGPFLL E RLA E L F RSV L SF D RAADPAALLAL L LALLLELL 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 87 MIK L ------- VM A VINWV L INSTVI ST ES L GF K IE K IH P VT G F K N IF GIEA L SRA L RKV L ELLFLLFLLKY V FDITGG E 159
Cdd:pfam01312 82 LLL L plllvll LA A LLANL L QVGFLF ST KA L KP K FS K LN P IS G L K R IF SLRS L VEL L KSL L KVAVVGAVAYL V LRGNLP E 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 160 L NM L KETN ------ NSS D F L Y KL MFYIAFVSMLYVVY gvcvgcv D FLVE R YH F H KK NR MT FT E M K N E M KE T EG S PEIK SE 233
Cdd:pfam01312 162 L LA L ADLP leaala LLG D L L L KL LLAVLLALLVIAAI ------- D YPYQ R WQ F E KK LK MT KQ E V K D E Y KE S EG D PEIK GR 234
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 234 RKRKM RE V - MDAP M VKGRRPTFALA NPTH IL V PIC YD RNIDR APVV LQICT D S LA QEE R KRLQ E MN VPI I EN K PLARA F Y 312
Cdd:pfam01312 235 IRQLQ RE M a RRRM M AEVPKADVVIT NPTH YA V ALK YD PGKMP APVV VAKGA D E LA LRI R EIAR E HG VPI V EN P PLARA L Y 314
330 340
....*....|....*....|..
gi 1447617678 313 RKMKN G E d F IP K E F Y RD VA II L 334
Cdd:pfam01312 315 ATVEV G Q - E IP E E L Y QA VA EV L 335
FlhB
COG1377 Flagellar biosynthesis protein FlhB [Cell motility];
2-334
8.06e-68
Flagellar biosynthesis protein FlhB [Cell motility];
Pssm-ID: 440987
Cd Length: 352
Bit Score: 216.52
E-value: 8.06e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 2 E STEP K KYP PT E K K LRD LKK KGQ FPKTE laeptl EL VAFALIFS G M L F L ------ MF E HND E WFEVI L YADTQVGF ---- 71
Cdd:COG1377 4 E DDGE K TEE PT P K R LRD ARE KGQ VARSR ------ EL TTALVLLA G L L L L lflgps LA E RLG E LLRSL L SFARALAL dpad 77
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 72 ----- HLVVSVLS L CIGSIFMIKLVM A VINWV L INSTVI ST ES L GF K IEKIH P VT G F K NI F GIE AL SRA L R --- K V L --- 140
Cdd:COG1377 78 llall GALLLEAL L ALLPLLLVLALA A LLANL L QGGFLF ST KA L KP K FSRLN P IS G L K RL F SLR AL VEL L K sll K L L lvg 157
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 141 -- EL L F L LFL L KYVFDITGGE L NML ke TNNSS D F L Y KL MFYIAFVSMLYVVY gvcvgcv D FLVE R YHFH KK N RMT FT E M K 218
Cdd:COG1377 158 gv AY L V L RGE L PELLALAALP L AAA -- LALLG D L L L KL LLAVLLALLVIAAI ------- D YPYQ R WEHE KK L RMT KQ E V K 228
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 219 N E M KE T EG S PE I K SERKRKM RE - VMDAP M VKGRRPTFALA NPTH IL V PIC YD RNIDR APVV LQICT D SL A QEE R KRLQ E M 297
Cdd:COG1377 229 D E H KE S EG D PE V K GRIRQLQ RE m ARRRM M AAVPKADVVIT NPTH YA V ALK YD PGKMG APVV VAKGA D EV A LRI R EIAR E H 308
330 340 350
....*....|....*....|....*....|....*..
gi 1447617678 298 N VPI I EN K PLARA F Y RKMKN G E d F IP K E F Y RD VA II L 334
Cdd:COG1377 309 G VPI V EN P PLARA L Y ATVEV G Q - E IP E E L Y QA VA EV L 344
FlhB_rel_III
TIGR01404 type III secretion protein, YscU/HrpY family; This model represents one of several families of ...
7-339
1.34e-53
type III secretion protein, YscU/HrpY family; This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 130471
Cd Length: 342
Bit Score: 179.39
E-value: 1.34e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 7 K KYP PT E KKLRD LK KKGQ FP K TE laeptl E L VAFA L IFS G MLF L MF eh NDEW FE VI L ---------------- YA DT QV G 70
Cdd:TIGR01404 3 K TEK PT P KKLRD AR KKGQ VA K SK ------ D L TSAV L LLA G FFY L LS -- LASV FE EM L iallilpldfddqpfa YA LA QV L 74
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 71 FH L VVSV L SLC i GSIFM I K L VMA V INWV L INST V IS TE S L GFKIE K IH P VT G F K N IF GIEA L SRA L RKV L E L LF L LFLLK 150
Cdd:TIGR01404 75 SG L LQLI L TVL - LPLLA I V L LAG V LSGL L QVGF V LA TE A L KPDLS K LN P IS G L K Q IF SLRS L KEL L KSI L K L VA L ALIFY 153
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 151 YVFDITGG EL NM L KETN ------ NSSDF L YK L MFYIAFVSML yvvygvc VG CV DF LVE RY H F H K KNR M TFT E M K N E M KE T 224
Cdd:TIGR01404 154 LFLKNYLK EL FA L PYCG ldglap IVGEL L KL L ILVCLGFFLV ------- VG LA DF AFQ RY L F M K DLK M SKD E V K R E Y KE Q 226
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 225 EG S PEIKS E R KRKMR E VMDAPMVKG - R R P T FAL ANPTHI LVP I C Y DRNIDRA P VVLQIC TD SL A QEE R KRLQ E MNV P IIE 303
Cdd:TIGR01404 227 EG D PEIKS K R RELHQ E ILSEQLKSD v K R S T LVV ANPTHI AIG I Y Y KPGETPL P LIICKG TD AQ A LAV R AYAE E AGI P VVR 306
330 340 350
....*....|....*....|....*....|....*.
gi 1447617678 304 NK PLAR AF YR KMKN G e DF IP K E FYRD VA II L SA L KR 339
Cdd:TIGR01404 307 DI PLAR QL YR TARV G - QY IP E E LFEA VA EL L RW L EQ 341
flhB
PRK05702 flagellar type III secretion system protein FlhB;
1-345
1.84e-53
flagellar type III secretion system protein FlhB;
Pssm-ID: 235569
Cd Length: 359
Bit Score: 179.58
E-value: 1.84e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 1 MESTEP K KYP PT E KKL RDLKK KGQ F P K - T EL AEPTLE L VAFALIF ---------- SGML FLM F EHND E WFE vilya D TQV 69
Cdd:PRK05702 3 EDDDDE K TEE PT P KKL EKARE KGQ V P R s R EL NTAASL L AGLVVLW ffgpslarrl SGML RAL F SFDR E IIF ----- D PND 77
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 70 GFH L VVSV L SLCIGSIFM I K L VMAVINW --- VL INSTVI S TES L GF K IE K IH P VT G F K NI F GIEA L SR --- A L R KVL E -- 141
Cdd:PRK05702 78 VLS L FLLL L LEALLALLP I L L LLVLAAL lap VL QGGLLF S PKA L KP K FS K LN P LK G L K RM F SAQG L VE llk S L L KVL L vg 157
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 142 LLFLLF L LKYVFDI tgge L NMLK E T ----- NNSS D FLY KL MFYIAFVSMLYVVY gvcvgcv D FLVE R YHFH KK NR MT FT E 216
Cdd:PRK05702 158 GVAYFV L WSNLDEL ---- L SLAA E P leaal GHAL D LVL KL LLLVVLALLVIAAI ------- D VPFQ R WQYL KK LK MT KQ E 226
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 217 M K N E M K ET EG S PE I K SERKRKM RE vmdap M VKG R ------ RPTFALA NPTH IL V PIC YDR NIDR APVV LQICT D SL A QEE 290
Cdd:PRK05702 227 V K D E H K QS EG D PE V K GRIRQLQ RE ----- M ARR R mmaavp KADVVIT NPTH YA V ALK YDR GKMA APVV VAKGV D EV A LKI 301
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 1447617678 291 R KRLQ E M NVPI I EN K PLARA F Y RKMKN G ED f IP K E F Y RD VA II L S --- A LKR HQNAKK 345
Cdd:PRK05702 302 R EIAR E H NVPI V EN P PLARA L Y ATVEI G QE - IP E E L Y KA VA EV L A yvy Q LKR WRKGGG 358
Name
Accession
Description
Interval
E-value
Bac_export_2
pfam01312 FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, ...
7-334
3.50e-69
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.
Pssm-ID: 460157
Cd Length: 338
Bit Score: 219.62
E-value: 3.50e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 7 K KYP PT E KKLRD LKK KGQ FP K TELAEPTLE L V A FA L IFSGMLFLMF E HND E W F EVI L YA D TQVGFHLVVSV L SLCIGSIF 86
Cdd:pfam01312 2 K TEE PT P KKLRD ARE KGQ VA K SRELTSAAV L L A GL L ALLFLGPFLL E RLA E L F RSV L SF D RAADPAALLAL L LALLLELL 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 87 MIK L ------- VM A VINWV L INSTVI ST ES L GF K IE K IH P VT G F K N IF GIEA L SRA L RKV L ELLFLLFLLKY V FDITGG E 159
Cdd:pfam01312 82 LLL L plllvll LA A LLANL L QVGFLF ST KA L KP K FS K LN P IS G L K R IF SLRS L VEL L KSL L KVAVVGAVAYL V LRGNLP E 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 160 L NM L KETN ------ NSS D F L Y KL MFYIAFVSMLYVVY gvcvgcv D FLVE R YH F H KK NR MT FT E M K N E M KE T EG S PEIK SE 233
Cdd:pfam01312 162 L LA L ADLP leaala LLG D L L L KL LLAVLLALLVIAAI ------- D YPYQ R WQ F E KK LK MT KQ E V K D E Y KE S EG D PEIK GR 234
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 234 RKRKM RE V - MDAP M VKGRRPTFALA NPTH IL V PIC YD RNIDR APVV LQICT D S LA QEE R KRLQ E MN VPI I EN K PLARA F Y 312
Cdd:pfam01312 235 IRQLQ RE M a RRRM M AEVPKADVVIT NPTH YA V ALK YD PGKMP APVV VAKGA D E LA LRI R EIAR E HG VPI V EN P PLARA L Y 314
330 340
....*....|....*....|..
gi 1447617678 313 RKMKN G E d F IP K E F Y RD VA II L 334
Cdd:pfam01312 315 ATVEV G Q - E IP E E L Y QA VA EV L 335
FlhB
COG1377 Flagellar biosynthesis protein FlhB [Cell motility];
2-334
8.06e-68
Flagellar biosynthesis protein FlhB [Cell motility];
Pssm-ID: 440987
Cd Length: 352
Bit Score: 216.52
E-value: 8.06e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 2 E STEP K KYP PT E K K LRD LKK KGQ FPKTE laeptl EL VAFALIFS G M L F L ------ MF E HND E WFEVI L YADTQVGF ---- 71
Cdd:COG1377 4 E DDGE K TEE PT P K R LRD ARE KGQ VARSR ------ EL TTALVLLA G L L L L lflgps LA E RLG E LLRSL L SFARALAL dpad 77
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 72 ----- HLVVSVLS L CIGSIFMIKLVM A VINWV L INSTVI ST ES L GF K IEKIH P VT G F K NI F GIE AL SRA L R --- K V L --- 140
Cdd:COG1377 78 llall GALLLEAL L ALLPLLLVLALA A LLANL L QGGFLF ST KA L KP K FSRLN P IS G L K RL F SLR AL VEL L K sll K L L lvg 157
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 141 -- EL L F L LFL L KYVFDITGGE L NML ke TNNSS D F L Y KL MFYIAFVSMLYVVY gvcvgcv D FLVE R YHFH KK N RMT FT E M K 218
Cdd:COG1377 158 gv AY L V L RGE L PELLALAALP L AAA -- LALLG D L L L KL LLAVLLALLVIAAI ------- D YPYQ R WEHE KK L RMT KQ E V K 228
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 219 N E M KE T EG S PE I K SERKRKM RE - VMDAP M VKGRRPTFALA NPTH IL V PIC YD RNIDR APVV LQICT D SL A QEE R KRLQ E M 297
Cdd:COG1377 229 D E H KE S EG D PE V K GRIRQLQ RE m ARRRM M AAVPKADVVIT NPTH YA V ALK YD PGKMG APVV VAKGA D EV A LRI R EIAR E H 308
330 340 350
....*....|....*....|....*....|....*..
gi 1447617678 298 N VPI I EN K PLARA F Y RKMKN G E d F IP K E F Y RD VA II L 334
Cdd:COG1377 309 G VPI V EN P PLARA L Y ATVEV G Q - E IP E E L Y QA VA EV L 344
FlhB_rel_III
TIGR01404 type III secretion protein, YscU/HrpY family; This model represents one of several families of ...
7-339
1.34e-53
type III secretion protein, YscU/HrpY family; This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 130471
Cd Length: 342
Bit Score: 179.39
E-value: 1.34e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 7 K KYP PT E KKLRD LK KKGQ FP K TE laeptl E L VAFA L IFS G MLF L MF eh NDEW FE VI L ---------------- YA DT QV G 70
Cdd:TIGR01404 3 K TEK PT P KKLRD AR KKGQ VA K SK ------ D L TSAV L LLA G FFY L LS -- LASV FE EM L iallilpldfddqpfa YA LA QV L 74
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 71 FH L VVSV L SLC i GSIFM I K L VMA V INWV L INST V IS TE S L GFKIE K IH P VT G F K N IF GIEA L SRA L RKV L E L LF L LFLLK 150
Cdd:TIGR01404 75 SG L LQLI L TVL - LPLLA I V L LAG V LSGL L QVGF V LA TE A L KPDLS K LN P IS G L K Q IF SLRS L KEL L KSI L K L VA L ALIFY 153
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 151 YVFDITGG EL NM L KETN ------ NSSDF L YK L MFYIAFVSML yvvygvc VG CV DF LVE RY H F H K KNR M TFT E M K N E M KE T 224
Cdd:TIGR01404 154 LFLKNYLK EL FA L PYCG ldglap IVGEL L KL L ILVCLGFFLV ------- VG LA DF AFQ RY L F M K DLK M SKD E V K R E Y KE Q 226
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 225 EG S PEIKS E R KRKMR E VMDAPMVKG - R R P T FAL ANPTHI LVP I C Y DRNIDRA P VVLQIC TD SL A QEE R KRLQ E MNV P IIE 303
Cdd:TIGR01404 227 EG D PEIKS K R RELHQ E ILSEQLKSD v K R S T LVV ANPTHI AIG I Y Y KPGETPL P LIICKG TD AQ A LAV R AYAE E AGI P VVR 306
330 340 350
....*....|....*....|....*....|....*.
gi 1447617678 304 NK PLAR AF YR KMKN G e DF IP K E FYRD VA II L SA L KR 339
Cdd:TIGR01404 307 DI PLAR QL YR TARV G - QY IP E E LFEA VA EL L RW L EQ 341
flhB
PRK05702 flagellar type III secretion system protein FlhB;
1-345
1.84e-53
flagellar type III secretion system protein FlhB;
Pssm-ID: 235569
Cd Length: 359
Bit Score: 179.58
E-value: 1.84e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 1 MESTEP K KYP PT E KKL RDLKK KGQ F P K - T EL AEPTLE L VAFALIF ---------- SGML FLM F EHND E WFE vilya D TQV 69
Cdd:PRK05702 3 EDDDDE K TEE PT P KKL EKARE KGQ V P R s R EL NTAASL L AGLVVLW ffgpslarrl SGML RAL F SFDR E IIF ----- D PND 77
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 70 GFH L VVSV L SLCIGSIFM I K L VMAVINW --- VL INSTVI S TES L GF K IE K IH P VT G F K NI F GIEA L SR --- A L R KVL E -- 141
Cdd:PRK05702 78 VLS L FLLL L LEALLALLP I L L LLVLAAL lap VL QGGLLF S PKA L KP K FS K LN P LK G L K RM F SAQG L VE llk S L L KVL L vg 157
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 142 LLFLLF L LKYVFDI tgge L NMLK E T ----- NNSS D FLY KL MFYIAFVSMLYVVY gvcvgcv D FLVE R YHFH KK NR MT FT E 216
Cdd:PRK05702 158 GVAYFV L WSNLDEL ---- L SLAA E P leaal GHAL D LVL KL LLLVVLALLVIAAI ------- D VPFQ R WQYL KK LK MT KQ E 226
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 217 M K N E M K ET EG S PE I K SERKRKM RE vmdap M VKG R ------ RPTFALA NPTH IL V PIC YDR NIDR APVV LQICT D SL A QEE 290
Cdd:PRK05702 227 V K D E H K QS EG D PE V K GRIRQLQ RE ----- M ARR R mmaavp KADVVIT NPTH YA V ALK YDR GKMA APVV VAKGV D EV A LKI 301
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 1447617678 291 R KRLQ E M NVPI I EN K PLARA F Y RKMKN G ED f IP K E F Y RD VA II L S --- A LKR HQNAKK 345
Cdd:PRK05702 302 R EIAR E H NVPI V EN P PLARA L Y ATVEI G QE - IP E E L Y KA VA EV L A yvy Q LKR WRKGGG 358
PRK12772
PRK12772 fused FliR family export protein/FlhB family type III secretion system protein;
12-336
6.26e-35
fused FliR family export protein/FlhB family type III secretion system protein;
Pssm-ID: 237199 [Multi-domain]
Cd Length: 609
Bit Score: 134.42
E-value: 6.26e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 12 T E KK LR D LK KKGQ FP K TELAEPTLE L V A FA L IF S g M L FLMF ----- E HNDEWFEVI L YAD - TQVGFHLVVSVLS L CIGS I 85
Cdd:PRK12772 270 T P KK KS D AR KKGQ IA K SKELALAIT L L A CT L VL S - A L GGYV antlk E TMIYFLNNY L NMN l NYNSLNSLAIITL L RVAK I 348
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 86 F M ---- IKL V MA V INWV L INSTVIST E S L GFKIE K IH P VT GFK NI F GIEALSRA L RKVLELLFLLFL - L K YVF D ----- I 155
Cdd:PRK12772 349 F L pval PIM V FG V AANL L QTGFLFTK E P L KPDLK K LN P IN GFK RM F SMRSVMEL L KDLTIITIVGIV g Y K FLQ D nyldi L 428
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 156 TG G E L NMLKETNNSSDFLYKLM F Y I AFVSMLYV V Y gvcvgcv D FLVER Y HFH K KN RMT FT E M K N E M K ET EG S P E IK SER K 235
Cdd:PRK12772 429 NL G N L YLPYIITELKSLVISIF F R I TLIMIIIA V A ------- D YVYQK Y QYN K DL RMT KQ E V K E E Y K QD EG D P Q IK AKI K 501
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 236 R K M RE - V M DAP M VKGRRP T FALA NPTHI L V PIC Y DRNI D R AP V V LQICT D SL A QEERKRLQ E MN VPIIENKPLAR AF Y R K 314
Cdd:PRK12772 502 Q K Q RE m A M QRM M QEVPKA T VVVT NPTHI A V ALK Y EEGK D E AP K V VAKGA D YV A LKIKEIAK E ND VPIIENKPLAR LI Y K K 581
330 340
....*....|....*....|..
gi 1447617678 315 MKNGED f IP KEF Y RD VA I IL SA 336
Cdd:PRK12772 582 VEIDQE - IP QDM Y QA VA E IL AI 602
PRK12721
PRK12721 EscU/YscU/HrcU family type III secretion system export apparatus switch protein;
2-334
3.42e-34
EscU/YscU/HrcU family type III secretion system export apparatus switch protein;
Pssm-ID: 183700
Cd Length: 349
Bit Score: 128.64
E-value: 3.42e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 2 E S TE P kkyp PTEKKLRD LK KKGQ FP K TELAEPTLE L V A FA L I F S ---- GMLFLMFEHNDEWFEVI ---- LYA D TQ VG f HL 73
Cdd:PRK12721 3 E K TE K ---- PTEKKLRD AR KKGQ VV K SVEITSGVQ L A A LL L Y F L legp SLVEAIIGLINSTIQLL nkpf LYA L TQ IL - GA 77
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 74 V VS VL SLCIGSIFMIKL V MA V INWVLINSTVISTESL G F K I EKI H PV TGF K N IF GIEALSRALRKV L ELLF L LFLLK Y VF 153
Cdd:PRK12721 78 V LE VL LRFLLVLGAGLI V AT V GTGIAQVGPLLASKAI G P K A EKI N PV SNA K Q IF SLKSVFELCKSL L KVVI L SLIFA Y LL 157
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 154 DITGGELNM L KETNNS ----- SDF L YKLM ------ F Y IA F VSM lyvvygvcvgcv D FLVE RY HFH K KNR M TFTEM K N E M K 222
Cdd:PRK12721 158 HYYAPSFAY L PYCGAA cglpv VST L IFWL wgglla C Y LV F GIL ------------ D YSFQ RY KIM K QLK M SKDDV K Q E Y K 225
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 223 ET EG S PEIK SE R KRKMR E VMDAPMVKG - RRP T FALA NPTHI L V PIC Y DRNIDRA P V VL QICT D SL A QEER K RLQEMNV P I 301
Cdd:PRK12721 226 DS EG D PEIK QK R RELQS E IQSGSLANN v KKS T AVVR NPTHI A V CLY Y HPGETPL P R VL EKGK D AQ A LHIV K LAERNGI P V 305
330 340 350
....*....|....*....|....*....|...
gi 1447617678 302 I EN K PLARA FYRKMKN G e D F IP KEFYRD VA II L 334
Cdd:PRK12721 306 V EN I PLARA LFKEVEC G - D Y IP ETLFEP VA AL L 337
PRK08156
PRK08156 EscU/YscU/HrcU family type III secretion system export apparatus switch protein;
11-345
1.92e-26
EscU/YscU/HrcU family type III secretion system export apparatus switch protein;
Pssm-ID: 236168
Cd Length: 361
Bit Score: 107.79
E-value: 1.92e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 11 PT E KKLRD LK KKGQ FP K TE laeptl E L VAFALIFS G MLF L M ---- F EHNDEWFEV IL YADTQ ------------ VGFHLV 74
Cdd:PRK08156 8 PT K KKLRD SA KKGQ SF K SK ------ D L ITAVVLLG G IAY L V sfgs F SEFMSIYKR IL ADNFD inigdyflavmi IFLKIL 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 75 VSV L S LC IGSIFMIK L VMA vinwvlin ST V IS TE SLGFKIEKIH PV T G F K N IF GIEALSRALRKV L E L LFLLFLLKYVFD 154
Cdd:PRK08156 82 IPF L L LC LLAGALPT L LQT -------- RF V LA TE AIKLNFSALN PV K G L K K IF SLRTVKEFVKAL L Y L IVFALTAYVFWK 153
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 155 ITGG E L nm LKET N NSSDF L YKLM -- FYIAF V s MLYVVYGVC V GCV DF LV E RYHFH K KNR M TFT E M K N E M KE T EG S PEIKS 232
Cdd:PRK08156 154 NYKK E I -- FSQL N GNIVG L IVIW re LLVKL V - LTFLACALI V LIL DF IA E YFLHM K DMK M DKQ E V K R E Y KE Q EG N PEIKS 230
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 233 E R KRKMR E VM - DAPMVKG R RPTFAL ANPTHI LVP I CYDRNIDRA P VVLQIC T DSL A QEE R KRLQEMN VP IIENKP LAR AF 311
Cdd:PRK08156 231 K R REAHQ E IL s EQVKSDI R NSRLIV ANPTHI AIG I YFNPELAPI P FISVRE T NQR A LAV R AYAEKVG VP VVRDIK LAR RL 310
330 340 350
....*....|....*....|....*....|....
gi 1447617678 312 Y RK m KNGED F IPK E FYRD V AII L SA L KRHQ NA KK 345
Cdd:PRK08156 311 Y KT - HRRYS F VSL E DLDE V LRL L IW L EQVE NA GM 343
flhB
PRK13109 flagellar biosynthesis protein FlhB; Reviewed
5-334
6.27e-25
flagellar biosynthesis protein FlhB; Reviewed
Pssm-ID: 183864
Cd Length: 358
Bit Score: 103.34
E-value: 6.27e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 5 E P K KYPP TE K K L RD LKK KG QF P KTEL A EPTLELVAFALIFSGML ---------- FLMFEHNDEW F EVILY AD TQV gfh L V 74
Cdd:PRK13109 8 E S K TEEA TE R K V RD AIE KG DI P VSRE A PVFASMLGLLIALAFFA rgqaaqltgd LAPLLDDPRG F SLETG AD AML --- L L 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 75 VS V LSLCIGSIFM I K L VM AV INW --- V L I N STVISTESLGF K IEK I H P VT G FKN IFG IEALSRA L RKVLEL L FLLFLLKY 151
Cdd:PRK13109 85 SR V ALAAGRFLLP I L L IL AV CGL aas L L Q N LPRFVLDRIQP K WSR I S P MK G WTR IFG TSGQVEF L KSLFKF L SVSVVVLL 164
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 152 V fd ITGGELNMLKETNNSSDF L YK L MFYI A -- F VS MLYVVYG V C V GC v D FLVE R Y H FHKKN RMT FT E M K N E M K ET EG S P E 229
Cdd:PRK13109 165 L -- LRSERAKAVNAMFVDPSQ L PE L ILTV A ir L VS AVAIATI V L V AL - D LVWA R F H WRRSL RMT KQ E I K D E H K QA EG D P S 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 230 I K S ------- E R K R K m R EVMDA P mvkgr R P T FAL ANPTH ILVPIC Y D R NIDR AP V V LQICT D SL A QEE R KRLQ E MNV P I I 302
Cdd:PRK13109 242 V K A rlrslaq D R A R N - R MLANV P ----- R A T LVI ANPTH FAIALR Y E R SENP AP L V VAKGQ D LI A LKI R EIAE E NGI P V I 315
330 340 350
....*....|....*....|....*....|..
gi 1447617678 303 E N KPLAR AF Y RKMKN g EDF IP K EFYR D VA I IL 334
Cdd:PRK13109 316 E D KPLAR SL Y DAVQV - DQV IP A EFYR P VA Q IL 346
PRK06298
PRK06298 type III secretion system protein; Validated
12-334
2.81e-24
type III secretion system protein; Validated
Pssm-ID: 180519
Cd Length: 356
Bit Score: 101.47
E-value: 2.81e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 12 T E K K LRD LK KKGQ FP K TE - LAEPTLEL V AFA L I FS GML F l MFE H NDEWFEV I L - Y A D T QVGFHLV V SV L SL C IGS I FMIK 89
Cdd:PRK06298 9 T P K R LRD AR KKGQ VA K SQ d FPSAITFI V SMF L T FS LSS F - FAK H LGSFLVS I F k T A P T NHDPVVT V YY L KN C LIL I LTAS 87
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 90 L ------- VMA V INWV LI NSTVI STE SLGFK I E K IH P VTGF K NI F GIEA L SRA L RKV L ELLFLLFL lky VFDITGGELNM 162
Cdd:PRK06298 88 L pllgava FVG V LVGF LI VGPTF STE VFKPD I K K FN P IDNL K QK F KVKT L IEL L KSI L KISGAALI --- LYIVLKNRVPL 164
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 163 LK ET NN ---- SSDFLY K LMF Y I A FV S M ly VVYGVC V GCV D FLVE R YH F H K KNR M TFT E M K N E M K E TEG S PEIK SE R KRKM 238
Cdd:PRK06298 165 II ET AG vppl VTAQIF K EIL Y K A VT S I -- GIFFLV V AVL D LVYQ R HN F A K ELK M EKF E V K Q E F K D TEG N PEIK GR R RQIA 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 239 R E VM - DAPMVKGRRPTFALA NP TH I L V P I C Y DRNIDR AP VVLQICTDSL A QEERKRLQEMN VPI IE N K PLA RAFYRKM K N 317
Cdd:PRK06298 243 Q E IA y EDTSSQVKHASAVVS NP KD I A V A I G Y MPEKYK AP WIIAMGINLR A KRIIAEAEKYG VPI MR N V PLA HQLLDEG K E 322
330
....*....|....*..
gi 1447617678 318 GE d FIP KEF Y RDVAI IL 334
Cdd:PRK06298 323 LK - FIP EST Y EAIGE IL 338
flhB
PRK12468 flagellar biosynthesis protein FlhB; Reviewed
2-339
5.92e-24
flagellar biosynthesis protein FlhB; Reviewed
Pssm-ID: 171522
Cd Length: 386
Bit Score: 101.26
E-value: 5.92e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 2 E S TEP K KYP PT EK KL RDLKK KGQ F P KTELAEPT L E L V A ----------- F A LIF S G M LF -- L M F E H ---- ND EWFE vily 64
Cdd:PRK12468 4 D S DQE K SEE PT AS KL EKARE KGQ I P RSRELTSM L M L G A gltilwmsges M A RQL S A M VA qg L H F D H smvs ND KQML ---- 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 65 ad T Q V G FH L VVSV L SLC ig S IF MIKLVM A VINWV L INSTVI S T ES LG F KIEKIH PV T G F K NI F GIE AL SRA L RKV L ELLF 144
Cdd:PRK12468 80 -- R Q I G ML L RQTL L AML -- P IF AGLVIV A LAVPM L LGGVLF S G ES IK F DLKRMS PV A G L K RM F SSQ AL AEL L KAI L KATL 155
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 145 llfllky V FDI TG GE L ----- N M LK - ETNNSSDF L YKLMFY I A F VSMLY V VYGVCVGCV D FLVERYHFH KK N RMT FTEMK 218
Cdd:PRK12468 156 ------- V GWV TG LF L whnwp D M MR l IAAPPVAA L GDALHL I I F CGLVV V LGLSPMVGF D VFYQITSHI KK L RMT KQDIR 228
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 219 N E M K ET EG S P EI K SE --------- R K R K M RE V MD A PMV kgrrptfa LA NPTH IL V PIC Y DRNIDR AP V VL QICTDSL A QE 289
Cdd:PRK12468 229 D E F K NQ EG D P HV K GR irqqqrama R R R M M VD V PK A DVI -------- VT NPTH YA V ALQ Y NESKMS AP K VL AKGAGAV A LR 300
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1447617678 290 E R KRLQ E MNV P II E NK PLARA FY R KMKN G ED f IP KEF Y RD VA II L S --- A LKR 339
Cdd:PRK12468 301 I R ELGA E HRI P LL E AP PLARA LF R HSEV G QH - IP ATL Y AA VA EV L A wvy Q LKR 352
flhB
PRK12773 flagellar biosynthesis protein FlhB; Reviewed
5-343
4.60e-18
flagellar biosynthesis protein FlhB; Reviewed
Pssm-ID: 183737
Cd Length: 646
Bit Score: 85.11
E-value: 4.60e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 5 E PKKY P PT E KKL R DLKK KG QF PK TE laeptl EL V A FALIFS G ML f L MFEHNDEW F EVIL Y A ---------- D T QVGFHL V 74
Cdd:PRK12773 298 E GRTE P GS E RRR R EERE KG NV PK SP ------ EL P A AVVLLA G VI - L VYLMGEYF F MRTY Y I lrkyihgvgl R T DMSSES V 370
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 75 VSV L SLCIGSI F M ------- I K LV M A V I NW V LINSTVISTES L G F KIEK I H P vt G FK NIFGIEA ---- L SRA L R KV LELL 143
Cdd:PRK12773 371 TEL L KNASTDL F T llwpllg I T LV G A I I GN V AQVGFIFTPRA L S F NFSR I R P -- N FK KVLPTRQ tlfn L GKS L A KV GLIA 448
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 144 -- FLLFLL K YV F D I T - G GE LNMLKETNNSSDFLY K LMFYIAFVSM lyvvygv CVGC VD F L VE RY HFHKKNR MT FT E M K N E 220
Cdd:PRK12773 449 wv SYIIIS K DF F P I L l S GE MGLEQAVALVMNSSF K IFLIVGIILL ------- AISI VD Y L YQ RY EYEESLK MT PS E A K R E 521
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447617678 221 M KE TE G SPEIKSE R KRKM R EV M DAPMVKGRR P T -- FALA NPTH IL V PIC Y DRN I DR AP V V LQICT D SL A QEERKRLQ E MN 298
Cdd:PRK12773 522 A KE SD G DRSLQAR R RQLA R DM M NKRKMLAKV P E ad VVIT NPTH FA V ALE Y KPG I HK AP I V IAKGV D DF A LLIIRIAR E NG 601
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1447617678 299 VP II E NKPL AR AF Y RKMKN G ED f I P KE FYR DV A I ILS A L KRHQN A 343
Cdd:PRK12773 602 VP TV E DRLQ AR GL Y EEVEL G AE - V P QQ FYR AI A T ILS R L ESFRR A 645
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
