|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
134-487 |
2.31e-163 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 469.64 E-value: 2.31e-163
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 134 FRSLVGQSHGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSARRNGPFVPINCGAIPADLLESELFGHEKGA 213
Cdd:COG3829 137 FDDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGA 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 214 FTGAITA-RKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVSATHRNLENMIDDESFRE 292
Cdd:COG3829 217 FTGAKKGgKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFRE 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 293 DLYYRLNVFPIEMPALKDRKDDIPLLLQELMTRMEAEGGQPFC-FTPRAVNSLMEHNWPGNVRELANLVERMIILYPNSL 371
Cdd:COG3829 297 DLYYRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNIKgISPEALELLLAYDWPGNVRELENVIERAVVLSEGDV 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 372 VDVNHLPtkyrysdipefqpehssygsvedqerdvlagifsenfsfedvEEMHENLNAPQslPPEGVNLKELLADLEVNM 451
Cdd:COG3829 377 ITPEHLP------------------------------------------EYLLEEAEAAS--AAEEGSLKEALEEVEKEL 412
|
330 340 350
....*....|....*....|....*....|....*.
gi 1447622397 452 INQALEAQGGVVARAADMLGMRRTTLVEKMRKYNMQ 487
Cdd:COG3829 413 IEEALEKTGGNKSKAAKALGISRSTLYRKLKKYGIK 448
|
|
| TF_PrdR |
NF041552 |
sigma-54 dependent transcriptional regulator PrdR; |
134-485 |
2.51e-122 |
|
sigma-54 dependent transcriptional regulator PrdR;
Pssm-ID: 469437 [Multi-domain] Cd Length: 577 Bit Score: 369.22 E-value: 2.51e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 134 FRSLVGQSHGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSARRnGPFVPINCGAIPADLLESELFGHEKGA 213
Cdd:NF041552 266 FGKIIGKSKKIIKKIEIAKQVAKTNSSVLITGESGTGKEVFARAIHQASGRK-GPFVPVNCSAIPEELFESEFFGYEEGA 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 214 FTGAITARK-GRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVSATHRNLENMIDDESFRE 292
Cdd:NF041552 345 FTGALKKGKiGKFELANNGTLFLDEIGDMPLSMQAKLLRVLQEKQVRRVGGEKYIKINVRIISATNKDLKKMVKEGKFRE 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 293 DLYYRLNVFPIEMPALKDRKDDIPLLLQELMTRMEAEGGQPFC-FTPRAVNSLMEHNWPGNVRELANLVERMIILYPNSL 371
Cdd:NF041552 425 DLYYRLNVVEIELPPLRERKEDIPLLINYFLKEICKENNKEIPkIDKEVYDILQNYKWKGNIRELKNTIEHLVVLSKNGT 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 372 VDVnhlptkyrySDIPEFqpehssygsvedqerdvlagIFSENFSFEDVEEMhenlnapqslppEGVNLKELLADLEVNM 451
Cdd:NF041552 505 ITK---------DSIPEY--------------------ILESVKKKEDEEGD------------YPLDLNKAVEKLEIDT 543
|
330 340 350
....*....|....*....|....*....|....
gi 1447622397 452 INQALEAQGGVVARAADMLGMRRTTLVEKMRKYN 485
Cdd:NF041552 544 IKKALEMSNGNKAKAAKLLNIPRSTLYYKLKQYG 577
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
137-304 |
5.81e-118 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 343.23 E-value: 5.81e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 137 LVGQSHGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSARRNGPFVPINCGAIPADLLESELFGHEKGAFTG 216
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 217 AITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVSATHRNLENMIDDESFREDLYY 296
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*...
gi 1447622397 297 RLNVFPIE 304
Cdd:pfam00158 161 RLNVIPIE 168
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
104-487 |
4.29e-116 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 351.71 E-value: 4.29e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 104 PQLSDALRhckeflgrkGVQVPSTSRKNTLFRSLVGQSHGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSA 183
Cdd:TIGR01817 174 VQLSKQLR---------DKAPEIARRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 184 RRNGPFVPINCGAIPADLLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGG 263
Cdd:TIGR01817 245 RAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGG 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 264 NTTIKVNVRVVSATHRNLENMIDDESFREDLYYRLNVFPIEMPALKDRKDDIPLLLQELMTRMEAEGGQPFCFTPRAVNS 343
Cdd:TIGR01817 325 NRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRV 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 344 LMEHNWPGNVRELANLVERMIILYPNSLVDvnhlptkyrysdipefqPEHSSYGSVeDQERDVLAGIFSENFSFEDVEEM 423
Cdd:TIGR01817 405 LMSCKWPGNVRELENCLERTATLSRSGTIT-----------------RSDFSCQSG-QCLSPMLAKTCPHGHISIDPLAG 466
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1447622397 424 HENLNAPQSLPPEGVN--LKELLADLEVNMinQALEAQGGVVARAADMLGMRRTTLVEKMRKYNMQ 487
Cdd:TIGR01817 467 TTPPHSPASAALPGEPglSGPTLSERERLI--AALEQAGWVQAKAARLLGMTPRQVGYALRKLNIE 530
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
141-484 |
5.82e-109 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 331.04 E-value: 5.82e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 141 SHGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSARRNGPFVPINCGAIPADLLESELFGHEKGAFTGAITA 220
Cdd:PRK11361 149 SPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 221 RKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVSATHRNLENMIDDESFREDLYYRLNV 300
Cdd:PRK11361 229 RQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNV 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 301 FPIEMPALKDRKDDIPLLLQELMTRMEAEGGQPFC-FTPRAVNSLMEHNWPGNVRELANLVERMIILYPNSLVDVNHLPT 379
Cdd:PRK11361 309 IHLILPPLRDRREDISLLANHFLQKFSSENQRDIIdIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGPIIFSEDLPP 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 380 KYRysdipefQPEHSSYGSvedqerdvlagifsenfsfedveemhenlnapQSLPPEGVNLKELLADLEVNMINQALEAQ 459
Cdd:PRK11361 389 QIR-------QPVCNAGEV--------------------------------KTAPVGERNLKEEIKRVEKRIIMEVLEQQ 429
|
330 340
....*....|....*....|....*
gi 1447622397 460 GGVVARAADMLGMRRTTLVEKMRKY 484
Cdd:PRK11361 430 EGNRTRTALMLGISRRALMYKLQEY 454
|
|
| FleQ |
pfam06490 |
Flagellar regulatory protein FleQ; This domain is found at the N terminus of a subset of ... |
6-115 |
4.52e-30 |
|
Flagellar regulatory protein FleQ; This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to pfam00072, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (pfam00072).
Pssm-ID: 428975 [Multi-domain] Cd Length: 108 Bit Score: 113.05 E-value: 4.52e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 6 KLLVIEDDPQIRLNLSNILEFVGEHCEAIESSQIKDIDCSRLWGGCII--GSLKSEQLTDEIAQWltkANYIPLLMANKQ 83
Cdd:pfam06490 1 KILVIDDDAERRHDLSTILEFLGEQCEAISSEDLSAALWSSRWEALAVilGSVSAAELLKALAKW---DPHLPVLLLGET 77
|
90 100 110
....*....|....*....|....*....|..
gi 1447622397 84 PYSLeEFTQYVGELESPLNYPQLSDALRHCKE 115
Cdd:pfam06490 78 DDAL-ELANVIGTLEEPLNYPQLTDLLHRCQV 108
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
138-299 |
1.64e-26 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 104.92 E-value: 1.64e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 138 VGQSHGIQEVRHLIEQVSGteANVLILGESGTGKEVVARNIHYHSARRNGPFVPINCGAIPADLLESELFGHEkgaftgA 217
Cdd:cd00009 1 VGQEEAIEALREALELPPP--KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF------L 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 218 ITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQErcferVGGNTTIKVNVRVVSATHRNlenmiDDESFREDLYYR 297
Cdd:cd00009 73 VRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLET-----LNDLRIDRENVRVIGATNRP-----LLGDLDRALYDR 142
|
..
gi 1447622397 298 LN 299
Cdd:cd00009 143 LD 144
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
160-298 |
1.78e-12 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 65.09 E-value: 1.78e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 160 NVLILGESGTGKEVVARNIHYHSARRNGPFVPINCGAIPADLLESELFGHEKGAFTGAITARKGR--FELAEG---GTLF 234
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRlaLALARKlkpDVLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1447622397 235 LDEIGDMPMSMQVKLLRVLQErcfERVGGNTTIKVNVRVVSATHR--NLENMIDDESFREDLYYRL 298
Cdd:smart00382 84 LDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNDekDLGPALLRRRFDRRIVLLL 146
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
134-487 |
2.31e-163 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 469.64 E-value: 2.31e-163
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 134 FRSLVGQSHGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSARRNGPFVPINCGAIPADLLESELFGHEKGA 213
Cdd:COG3829 137 FDDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGA 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 214 FTGAITA-RKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVSATHRNLENMIDDESFRE 292
Cdd:COG3829 217 FTGAKKGgKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFRE 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 293 DLYYRLNVFPIEMPALKDRKDDIPLLLQELMTRMEAEGGQPFC-FTPRAVNSLMEHNWPGNVRELANLVERMIILYPNSL 371
Cdd:COG3829 297 DLYYRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNIKgISPEALELLLAYDWPGNVRELENVIERAVVLSEGDV 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 372 VDVNHLPtkyrysdipefqpehssygsvedqerdvlagifsenfsfedvEEMHENLNAPQslPPEGVNLKELLADLEVNM 451
Cdd:COG3829 377 ITPEHLP------------------------------------------EYLLEEAEAAS--AAEEGSLKEALEEVEKEL 412
|
330 340 350
....*....|....*....|....*....|....*.
gi 1447622397 452 INQALEAQGGVVARAADMLGMRRTTLVEKMRKYNMQ 487
Cdd:COG3829 413 IEEALEKTGGNKSKAAKALGISRSTLYRKLKKYGIK 448
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
5-485 |
2.47e-154 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 445.56 E-value: 2.47e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 5 AKLLVIEDDPQIRLNLSNILEFVGEHC-------EAIESSQIKDIDCsrlwggcIIgslkseqlTD---------EIAQW 68
Cdd:COG2204 3 ARILVVDDDPDIRRLLKELLERAGYEVetaasgeEALALLREEPPDL-------VL--------LDlrmpgmdglELLRE 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 69 LTKANY-IPLLM--ANKQPYSLEEFTQY--VGELESPLNYPQLSDALRHCkeflgrkgVQVPSTSRKNTLFRSLVGQSHG 143
Cdd:COG2204 68 LRALDPdLPVILltGYGDVETAVEAIKAgaFDYLTKPFDLEELLAAVERA--------LERRRLRRENAEDSGLIGRSPA 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 144 IQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSARRNGPFVPINCGAIPADLLESELFGHEKGAFTGAITARKG 223
Cdd:COG2204 140 MQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTGAVARRIG 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 224 RFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVSATHRNLENMIDDESFREDLYYRLNVFPI 303
Cdd:COG2204 220 KFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKPIPVDVRVIAATNRDLEELVEEGRFREDLYYRLNVFPI 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 304 EMPALKDRKDDIPLLLQELMTRMEAEGGQPFCFTPRAVNSLMEHNWPGNVRELANLVERMIILYPNSLVDVNHLPtkyry 383
Cdd:COG2204 300 ELPPLRERREDIPLLARHFLARFAAELGKPVKLSPEALEALLAYDWPGNVRELENVIERAVILADGEVITAEDLP----- 374
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 384 sdipefqpehssygsvedqerdvlagifsenfsfedveemhenlnapqslppegvnlkELLADLEVNMINQALEAQGGVV 463
Cdd:COG2204 375 ----------------------------------------------------------EALEEVERELIERALEETGGNV 396
|
490 500
....*....|....*....|..
gi 1447622397 464 ARAADMLGMRRTTLVEKMRKYN 485
Cdd:COG2204 397 SRAAELLGISRRTLYRKLKKYG 418
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
119-485 |
1.30e-123 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 374.24 E-value: 1.30e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 119 RKGVQVPSTSRKNTLFRSLVGQSHGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSARRNGPFVPINCGAIP 198
Cdd:COG3284 305 RAARAAPAGAPAPAALAALAGGDPAMRRALRRARRLADRDIPVLILGETGTGKELFARAIHAASPRADGPFVAVNCAAIP 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 199 ADLLESELFGHEKGAFTGAIT-ARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVSAT 277
Cdd:COG3284 385 EELIESELFGYEPGAFTGARRkGRPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTKPIPVDVRLIAAT 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 278 HRNLENMIDDESFREDLYYRLNVFPIEMPALKDRkDDIPLLLQELMTRmEAEGGQPFCFTPRAVNSLMEHNWPGNVRELA 357
Cdd:COG3284 465 HRDLRELVAAGRFREDLYYRLNGLTLTLPPLRER-EDLPALIEHLLRE-LAAGRGPLRLSPEALALLAAYPWPGNVRELR 542
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 358 NLVERMIILYPNSLVDVNHLPtkyrysdiPEFQPEhssygsvedqerdvlagifsenfsfedveemhenlnaPQSLPPEG 437
Cdd:COG3284 543 NVLRTALALADGGVITVEDLP--------DELRAE-------------------------------------LAAAAPAA 577
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1447622397 438 VNLKELLADLEVNMINQALEAQGGVVARAADMLGMRRTTLVEKMRKYN 485
Cdd:COG3284 578 AAPLTSLEEAERDAILRALRACGGNVSAAARALGISRSTLYRKLKRYG 625
|
|
| TF_PrdR |
NF041552 |
sigma-54 dependent transcriptional regulator PrdR; |
134-485 |
2.51e-122 |
|
sigma-54 dependent transcriptional regulator PrdR;
Pssm-ID: 469437 [Multi-domain] Cd Length: 577 Bit Score: 369.22 E-value: 2.51e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 134 FRSLVGQSHGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSARRnGPFVPINCGAIPADLLESELFGHEKGA 213
Cdd:NF041552 266 FGKIIGKSKKIIKKIEIAKQVAKTNSSVLITGESGTGKEVFARAIHQASGRK-GPFVPVNCSAIPEELFESEFFGYEEGA 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 214 FTGAITARK-GRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVSATHRNLENMIDDESFRE 292
Cdd:NF041552 345 FTGALKKGKiGKFELANNGTLFLDEIGDMPLSMQAKLLRVLQEKQVRRVGGEKYIKINVRIISATNKDLKKMVKEGKFRE 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 293 DLYYRLNVFPIEMPALKDRKDDIPLLLQELMTRMEAEGGQPFC-FTPRAVNSLMEHNWPGNVRELANLVERMIILYPNSL 371
Cdd:NF041552 425 DLYYRLNVVEIELPPLRERKEDIPLLINYFLKEICKENNKEIPkIDKEVYDILQNYKWKGNIRELKNTIEHLVVLSKNGT 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 372 VDVnhlptkyrySDIPEFqpehssygsvedqerdvlagIFSENFSFEDVEEMhenlnapqslppEGVNLKELLADLEVNM 451
Cdd:NF041552 505 ITK---------DSIPEY--------------------ILESVKKKEDEEGD------------YPLDLNKAVEKLEIDT 543
|
330 340 350
....*....|....*....|....*....|....
gi 1447622397 452 INQALEAQGGVVARAADMLGMRRTTLVEKMRKYN 485
Cdd:NF041552 544 IKKALEMSNGNKAKAAKLLNIPRSTLYYKLKQYG 577
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
137-304 |
5.81e-118 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 343.23 E-value: 5.81e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 137 LVGQSHGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSARRNGPFVPINCGAIPADLLESELFGHEKGAFTG 216
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 217 AITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVSATHRNLENMIDDESFREDLYY 296
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*...
gi 1447622397 297 RLNVFPIE 304
Cdd:pfam00158 161 RLNVIPIE 168
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
104-487 |
4.29e-116 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 351.71 E-value: 4.29e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 104 PQLSDALRhckeflgrkGVQVPSTSRKNTLFRSLVGQSHGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSA 183
Cdd:TIGR01817 174 VQLSKQLR---------DKAPEIARRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 184 RRNGPFVPINCGAIPADLLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGG 263
Cdd:TIGR01817 245 RAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGG 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 264 NTTIKVNVRVVSATHRNLENMIDDESFREDLYYRLNVFPIEMPALKDRKDDIPLLLQELMTRMEAEGGQPFCFTPRAVNS 343
Cdd:TIGR01817 325 NRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRV 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 344 LMEHNWPGNVRELANLVERMIILYPNSLVDvnhlptkyrysdipefqPEHSSYGSVeDQERDVLAGIFSENFSFEDVEEM 423
Cdd:TIGR01817 405 LMSCKWPGNVRELENCLERTATLSRSGTIT-----------------RSDFSCQSG-QCLSPMLAKTCPHGHISIDPLAG 466
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1447622397 424 HENLNAPQSLPPEGVN--LKELLADLEVNMinQALEAQGGVVARAADMLGMRRTTLVEKMRKYNMQ 487
Cdd:TIGR01817 467 TTPPHSPASAALPGEPglSGPTLSERERLI--AALEQAGWVQAKAARLLGMTPRQVGYALRKLNIE 530
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
137-482 |
1.44e-115 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 348.27 E-value: 1.44e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 137 LVGQSHGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSARRNGPFVPINCGAIPADLLESELFGHEKGAFTG 216
Cdd:TIGR01818 136 LIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTG 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 217 AITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVSATHRNLENMIDDESFREDLYY 296
Cdd:TIGR01818 216 ANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 297 RLNVFPIEMPALKDRKDDIPLLLQELMTRMEAEGG-QPFCFTPRAVNSLMEHNWPGNVRELANLVERMIILYPNSLVDVN 375
Cdd:TIGR01818 296 RLNVIRIHLPPLRERREDIPRLARHFLALAARELDvEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMASGDEVLVS 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 376 HLPTKYRYSDIPEFQPEHSSYGSVEDQERDVLAGIFSENfsfedveemHENLnapqslppegvnLKELLADLEVNMINQA 455
Cdd:TIGR01818 376 DLPAELALTGRPASAPDSDGQDSWDEALEAWAKQALSRG---------EQGL------------LDRALPEFERPLLEAA 434
|
330 340
....*....|....*....|....*..
gi 1447622397 456 LEAQGGVVARAADMLGMRRTTLVEKMR 482
Cdd:TIGR01818 435 LQHTRGHKQEAAALLGWGRNTLTRKLK 461
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
141-484 |
5.82e-109 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 331.04 E-value: 5.82e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 141 SHGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSARRNGPFVPINCGAIPADLLESELFGHEKGAFTGAITA 220
Cdd:PRK11361 149 SPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 221 RKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVSATHRNLENMIDDESFREDLYYRLNV 300
Cdd:PRK11361 229 RQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNV 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 301 FPIEMPALKDRKDDIPLLLQELMTRMEAEGGQPFC-FTPRAVNSLMEHNWPGNVRELANLVERMIILYPNSLVDVNHLPT 379
Cdd:PRK11361 309 IHLILPPLRDRREDISLLANHFLQKFSSENQRDIIdIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGPIIFSEDLPP 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 380 KYRysdipefQPEHSSYGSvedqerdvlagifsenfsfedveemhenlnapQSLPPEGVNLKELLADLEVNMINQALEAQ 459
Cdd:PRK11361 389 QIR-------QPVCNAGEV--------------------------------KTAPVGERNLKEEIKRVEKRIIMEVLEQQ 429
|
330 340
....*....|....*....|....*
gi 1447622397 460 GGVVARAADMLGMRRTTLVEKMRKY 484
Cdd:PRK11361 430 EGNRTRTALMLGISRRALMYKLQEY 454
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
135-477 |
2.79e-106 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 325.59 E-value: 2.79e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 135 RSLVGQSHGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSARRNGPFVPINCGAIPADLLESELFGHEKGAF 214
Cdd:PRK05022 187 GEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAF 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 215 TGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVSATHRNLENMIDDESFREDL 294
Cdd:PRK05022 267 TGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 295 YYRLNVFPIEMPALKDRKDDIPLL----LQELMTRMeaeGGQPFCFTPRAVNSLMEHNWPGNVRELANLVERMIILypnS 370
Cdd:PRK05022 347 YHRLSVFPLSVPPLRERGDDVLLLagyfLEQNRARL---GLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALL---A 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 371 LVDVNhlptkyrySDIPEFQPEHssygsvedqerdvlagifsenFSFEDVEEMHENLNAPQSLPPEGVNLKELLADLEVN 450
Cdd:PRK05022 421 RARGA--------GRIVTLEAQH---------------------LDLPAEVALPPPEAAAAPAAVVSQNLREATEAFQRQ 471
|
330 340
....*....|....*....|....*..
gi 1447622397 451 MINQALEAQGGVVARAADMLGMRRTTL 477
Cdd:PRK05022 472 LIRQALAQHQGNWAAAARALELDRANL 498
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
128-486 |
6.93e-102 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 312.45 E-value: 6.93e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 128 SRKNTLFRSLVGQSHGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSARRNGPFVPINCGAIPADLLESELF 207
Cdd:TIGR02915 132 ALGGTALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELF 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 208 GHEKGAFTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVSATHRNLENMIDD 287
Cdd:TIGR02915 212 GYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAE 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 288 ESFREDLYYRLNVFPIEMPALKDRKDDIPLLLQELMTRMEAE-GGQPFCFTPRAVNSLMEHNWPGNVRELANLVERMIIL 366
Cdd:TIGR02915 292 GTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARElKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIM 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 367 YPNSLvdvnhlptkyrysdipefqpehssygsvedqerdvlagIFSENFSFEDVEemhenlNAPQSLPpegVNLKELLAD 446
Cdd:TIGR02915 372 AEGNQ--------------------------------------ITAEDLGLDARE------RAETPLE---VNLREVRER 404
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1447622397 447 LEVNMINQALEAQGGVVARAADMLGMRRTTLVEKMRKYNM 486
Cdd:TIGR02915 405 AEREAVRKAIARVDGNIARAAELLGITRPTLYDLMKKHGI 444
|
|
| phageshock_pspF |
TIGR02974 |
psp operon transcriptional activator PspF; Members of this protein family are PspF, the ... |
137-484 |
3.05e-95 |
|
psp operon transcriptional activator PspF; Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH [Regulatory functions, DNA interactions]
Pssm-ID: 274371 [Multi-domain] Cd Length: 329 Bit Score: 291.12 E-value: 3.05e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 137 LVGQSHGIQEVrhlIEQVSGT---EANVLILGESGTGKEVVARNIHYHSARRNGPFVPINCGAIPADLLESELFGHEKGA 213
Cdd:TIGR02974 1 LIGESNAFLEV---LEQVSRLaplDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 214 FTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVSATHRNLENMIDDESFRED 293
Cdd:TIGR02974 78 FTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRAD 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 294 LYYRLNVFPIEMPALKDRKDDIPLLLQELMTRMEAEGGQPFC--FTPRAVNSLMEHNWPGNVRELANLVERMIILYPNSL 371
Cdd:TIGR02974 158 LLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFpgFTPQAREQLLEYHWPGNVRELKNVVERSVYRHGLEE 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 372 VDVNHLptkyrysdipEFQPEHSSYGSVEDQERDvlagifsenfsfedveEMHENLNAPQSLPPE-----GVNLKELLAD 446
Cdd:TIGR02974 238 APIDEI----------IIDPFASPWRPKQAAPAV----------------DEVNSTPTDLPSPSSiaaafPLDLKQAQQD 291
|
330 340 350
....*....|....*....|....*....|....*...
gi 1447622397 447 LEVNMINQALEAQGGVVARAADMLGMRRTTLVEKMRKY 484
Cdd:TIGR02974 292 YEIELLQQALAEAQFNQRKAAELLGLTYHQLRGLLRKH 329
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
97-483 |
1.61e-94 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 293.48 E-value: 1.61e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 97 LESPLNYPQLSDALRHCKEFLGRKGVQVPSTSRKNTlfrSLVGQSHGIQEVRHLIEQVSGTEANVLILGESGTGKEVVAR 176
Cdd:PRK10365 104 LIKPLDFDNLQATLEKALAHTHSIDAETPAVTASQF---GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 177 NIHYHSARRNGPFVPINCGAIPADLLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQER 256
Cdd:PRK10365 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQER 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 257 CFERVGGNTTIKVNVRVVSATHRNLENMIDDESFREDLYYRLNVFPIEMPALKDRKDDIPLLLQELMTRMEAEGGQPF-C 335
Cdd:PRK10365 261 EVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVkG 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 336 FTPRAVNSLMEHNWPGNVRELANLVERMIILYPNSLVDVNHLPTKYrysdipefqpehssygsvedqerdvlagifsenf 415
Cdd:PRK10365 341 FTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYISERELPLAI---------------------------------- 386
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1447622397 416 sfedveemhenlnAPQSLPPEGVNLKELLADLEVNMINQALEAQGGVVARAADMLGMRRTTLVEKMRK 483
Cdd:PRK10365 387 -------------ASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
134-407 |
2.28e-92 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 290.17 E-value: 2.28e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 134 FRSLVGQSHGIqevRHLIEQ---VSGTEANVLILGESGTGKEVVARNIHYHSARRNGPFVPINCGAIPADLLESELFGHE 210
Cdd:COG3283 203 FDHIVASSPKM---RQVIRQakkMAMLDAPLLIQGETGTGKELLARACHLASPRGDKPFLALNCAALPDDVAESELFGYA 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 211 KGAFTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVSATHRNLENMIDDESF 290
Cdd:COG3283 280 PGAFGNAREGKKGLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQKDLAELVQEGEF 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 291 REDLYYRLNVFPIEMPALKDRKDDIPLLLQELMTRMEAEGGQPFC-FTPRAVNSLMEHNWPGNVRELANLVERMIILYPN 369
Cdd:COG3283 360 REDLYYRLNVLTLTLPPLRERKSDILPLAEHFVARFSQQLGRPRPrLSPDLVDFLQSYPWPGNVRQLENALYRAVSLLEG 439
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1447622397 370 SLVDVNHLptkyrysDIPEFQPEHSSY-----GSVEDQ----ERDVL 407
Cdd:COG3283 440 DELTPEDL-------QLPEYAASAGLLddlleGSLDEIvkrfERSLL 479
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
109-487 |
2.49e-91 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 286.00 E-value: 2.49e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 109 ALRHCKEflgrkgVQVPSTSRKNTLFRSLVGQSHGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSARRNGP 188
Cdd:PRK10923 118 AISHYQE------QQQPRNIQVNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAP 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 189 FVPINCGAIPADLLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIK 268
Cdd:PRK10923 192 FIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVK 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 269 VNVRVVSATHRNLENMIDDESFREDLYYRLNVFPIEMPALKDRKDDIPLLLQELMTRMEAE-GGQPFCFTPRAVNSLMEH 347
Cdd:PRK10923 272 VDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARElGVEAKLLHPETEAALTRL 351
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 348 NWPGNVRELANLVERMIILYPNSLVDVNHLPTKYRYSDIPEFQPEHSSygsvedqerDVLAGIFSEnFSFEDVEEMHENL 427
Cdd:PRK10923 352 AWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVPESTSQMQP---------DSWATLLAQ-WADRALRSGHQNL 421
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 428 napqslppegvnLKELLADLEVNMINQALEAQGGVVARAADMLGMRRTTLVEKMRKYNMQ 487
Cdd:PRK10923 422 ------------LSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
150-366 |
2.05e-88 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 277.49 E-value: 2.05e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 150 LIEQ---VSGTEANVLILGESGTGKEVVARNIHYHSARRNGPFVPINCGAIPADLLESELFGHEKGAFTGAITARKGRFE 226
Cdd:PRK15115 146 LLEQarmVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQ 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 227 LAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVSATHRNLENMIDDESFREDLYYRLNVFPIEMP 306
Cdd:PRK15115 226 AAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIP 305
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1447622397 307 ALKDRKDDIPLLLQELMtRMEAEGGQPFC--FTPRAVNSLMEHNWPGNVRELANLVERMIIL 366
Cdd:PRK15115 306 ALAERTEDIPLLANHLL-RQAAERHKPFVraFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
137-483 |
2.14e-88 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 280.21 E-value: 2.14e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 137 LVGQSHGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSARRNGPFVPINCGAIPADLLESELFGHEKGAFTG 216
Cdd:TIGR02329 214 LLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTG 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 217 AIT-ARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVSATHRNLENMIDDESFREDLY 295
Cdd:TIGR02329 294 ARRgGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLF 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 296 YRLNVFPIEMPALKDRKDDIPLLLQELMTRMEAEGGQPfcFTPRAV-------NSLMEHNWPGNVRELANLVERMIIlyp 368
Cdd:TIGR02329 374 YRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLP--DSEAAAqvlagvaDPLQRYPWPGNVRELRNLVERLAL--- 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 369 nslvdvnHLPTkyrysdipefQPEHssygsveDQERDVLAGIFSENFsfedvEEMHENLNAPQSLPPEgvnlkellADLE 448
Cdd:TIGR02329 449 -------ELSA----------MPAG-------ALTPDVLRALAPELA-----EASGKGKTSALSLRER--------SRVE 491
|
330 340 350
....*....|....*....|....*....|....*
gi 1447622397 449 VNMINQALEAQGGVVARAADMLGMRRTTLVEKMRK 483
Cdd:TIGR02329 492 ALAVRAALERFGGDRDAAAKALGISRTTLWRRLKA 526
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
134-483 |
7.40e-88 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 283.26 E-value: 7.40e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 134 FRSLVGQSHGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSARRNGPFVPINCGAIPADLLESELFGHEKGA 213
Cdd:PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 214 FTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVSATHRNLENMIDDESFRED 293
Cdd:PRK15429 455 FTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSD 534
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 294 LYYRLNVFPIEMPALKDRKDDIPLLLQELMTRMEAEGGQPFCFTP-RAVNSLMEHNWPGNVRELANLVERMIILYPNSLV 372
Cdd:PRK15429 535 LYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPaETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 614
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 373 DVNhLPtkyrysDIPEFQPEHSSYGSVEDQERdvlagifsenfsfEDveemhenlnapqslppegvnlkelladlEVNMI 452
Cdd:PRK15429 615 QLS-LP------DITLPEPETPPAATVVAQEG-------------ED----------------------------EYQLI 646
|
330 340 350
....*....|....*....|....*....|....
gi 1447622397 453 NQALEAQGGVVA---RAADMLGMRRTTLVEKMRK 483
Cdd:PRK15429 647 VRVLKETNGVVAgpkGAAQRLGLKRTTLLSRMKR 680
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
119-488 |
7.03e-86 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 273.90 E-value: 7.03e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 119 RKGVQVPSTSRKNTLFR--SLVGQSHGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIH--------YHSARRNGP 188
Cdd:PRK15424 201 RHNTHYATRNALRTRYVlgDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHreyfarhdARQGKKSHP 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 189 FVPINCGAIPADLLESELFGHEKGAFTGAitARKGR---FELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNT 265
Cdd:PRK15424 281 FVAVNCGAIAESLLEAELFGYEEGAFTGS--RRGGRaglFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQ 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 266 TIKVNVRVVSATHRNLENMIDDESFREDLYYRLNVFPIEMPALKDRKDDIPLLLQELMTRMEAEGGQPfcFTPRAVNSLM 345
Cdd:PRK15424 359 PVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAP--FSAALRQGLQ 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 346 EH-------NWPGNVRELANLVERMIIlypnslvdvnHLPTkyrysdipefQPEHSsygsvedqerdvLAGIFSENFSfe 418
Cdd:PRK15424 437 QCetlllhyDWPGNVRELRNLMERLAL----------FLSV----------EPTPD------------LTPQFLQLLL-- 482
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 419 dvEEMHENLNAPQSLPPEGVNLKELLAdlevnminqalEAQGGVVArAADMLGMRRTTLVEKMRKYNMQR 488
Cdd:PRK15424 483 --PELARESAKTPAPRLLAATLQQALE-----------RFNGDKTA-AANYLGISRTTLWRRLKAEAKAQ 538
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
136-487 |
4.72e-80 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 251.90 E-value: 4.72e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 136 SLVGQSHGIQEVrhlIEQVSGT---EANVLILGESGTGKEVVARNIHYHSARRNGPFVPINCGAIPADLLESELFGHEKG 212
Cdd:PRK11608 7 NLLGEANSFLEV---LEQVSRLaplDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 213 AFTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVSATHRNLENMIDDESFRE 292
Cdd:PRK11608 84 AFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 293 DLYYRLNVFPIEMPALKDRKDDIPLLLQELMTRMEAEGGQPFC--FTPRAVNSLMEHNWPGNVRELANLVERMIilypns 370
Cdd:PRK11608 164 DLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFpgFTERARETLLNYRWPGNIRELKNVVERSV------ 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 371 lvdvnhlptkYRysdipefqpehssYGSVEDQERDVLAGIFSENFSFEDVEemhenLNAPQSLPPEGVNLKELLADLEVN 450
Cdd:PRK11608 238 ----------YR-------------HGTSEYPLDNIIIDPFKRRPAEEAIA-----VSETTSLPTLPLDLREWQHQQEKE 289
|
330 340 350
....*....|....*....|....*....|....*..
gi 1447622397 451 MINQALEAQGGVVARAADMLGMRRTTLVEKMRKYNMQ 487
Cdd:PRK11608 290 LLQRSLQQAKFNQKRAAELLGLTYHQLRALLKKHQIL 326
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
145-487 |
7.68e-78 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 246.68 E-value: 7.68e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 145 QEVRHLIEQVSGTEAnVLILGESGTGKEVVARNIHYHSARRNGPFVPINCGAIPADLLESelfghekgaftgaitarkgr 224
Cdd:COG3604 103 EEDLRLLETLASLAA-VAILGETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES-------------------- 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 225 felaeggtlfldeigdmpmsmqvkllrvLQERCFERVGGNTTIKVNVRVVSATHRNLENMIDDESFREDLYYRLNVFPIE 304
Cdd:COG3604 162 ----------------------------LQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFPIR 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 305 MPALKDRKDDIPLLLQELMTRMEAE-GGQPFCFTPRAVNSLMEHNWPGNVRELANLVERMIILYPNSLVDVNHLPTKyry 383
Cdd:COG3604 214 LPPLRERREDIPLLAEHFLEKFSRRlGKPILRLSPEALEALMAYPWPGNVRELENVIERAVILAEGGVLDADDLAPG--- 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 384 sdipefqpehssygsvedqerdvlagifsenfSFEDVEEMhenlnapqslppegvnlkelladlEVNMINQALEAQGGVV 463
Cdd:COG3604 291 --------------------------------SREALEEV------------------------EREHILEALERTGGNI 314
|
330 340
....*....|....*....|....
gi 1447622397 464 ARAADMLGMRRTTLVEKMRKYNMQ 487
Cdd:COG3604 315 AGAARLLGLTPSTLRSRMKKLGIK 338
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
118-407 |
1.54e-66 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 222.64 E-value: 1.54e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 118 GRKGVQVPS-TSRKNTLFRSLVGQShgiQEVRHLIEQ---VSGTEANVLILGESGTGKEVVARNIHYHSARRNGPFVPIN 193
Cdd:PRK10820 186 ARMGRQLQNlAVNDDSAFSQIVAVS---PKMRQVVEQarkLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALN 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 194 CGAIPADLLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRV 273
Cdd:PRK10820 263 CASIPDDVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRV 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 274 VSATHRNLENMIDDESFREDLYYRLNVFPIEMPALKDRKDDIPLLLQELMTRMEAEGGQPFC-FTPRAVNSLMEHNWPGN 352
Cdd:PRK10820 343 ICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPkLAADLNTVLTRYGWPGN 422
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1447622397 353 VRELANLVER-MIILYPNSLvdvnhlptkyRYSDI--PEFQPEHSS-----YGSVEDQ----ERDVL 407
Cdd:PRK10820 423 VRQLKNAIYRaLTQLEGYEL----------RPQDIllPDYDAAVAVgedamEGSLDEItsrfERSVL 479
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
134-487 |
1.28e-56 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 198.75 E-value: 1.28e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 134 FRSLVGQSHGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSARRNGPFVPINCGAIPADLLESELFGhekGA 213
Cdd:PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLG---SD 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 214 FTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVSATHRNLENMIDDESFRED 293
Cdd:PRK11388 401 RTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQ 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 294 LYYRLNVFPIEMPALKDRKDDIPLLLQELMTRMEAEGGQPFCFTPRAVNSLMEHNWPGNVRELANLVERMIILYPNSLVD 373
Cdd:PRK11388 481 LYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSSDNGRIR 560
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 374 VNHLptkyrysdipefqPEHssygsvedqerdvlagIFSENFSFEDVeemhenlnaPQSLPPegvNLKelLADLEVNMIN 453
Cdd:PRK11388 561 LSDL-------------PEH----------------LFTEQATDDVS---------ATRLST---SLS--LAELEKEAII 597
|
330 340 350
....*....|....*....|....*....|....
gi 1447622397 454 QALEAQGGVVARAADMLGMRRTTLVEKMRKYNMQ 487
Cdd:PRK11388 598 NAAQVCGGRIQEMAALLGIGRTTLWRKMKQHGID 631
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
151-376 |
5.66e-42 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 156.92 E-value: 5.66e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 151 IEQVSG-TEANVLILGESGTGKEVVARNIHYHSARRN---GPFVPINCGAIPADLLESELFGHEKGAFTGAITARKGRFE 226
Cdd:COG4650 200 IERVAIrSRAPILLTGPTGAGKSQLARRIYELKKARHqvsGRFVEVNCATLRGDGAMSALFGHVKGAFTGAVSDRAGLLR 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 227 LAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVSATHRNLENMIDDESFREDLYYRLNVFPIEMP 306
Cdd:COG4650 280 SADGGVLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLLARINLWTFRLP 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 307 ALKDRKDDI-PLLLQEL---------MTRMEAEGGQ---PFCFTPRAVnslmehnWPGNVRELANLVERMIILYPNSLVD 373
Cdd:COG4650 360 GLAERREDIePNLDYELarfareqgrRVRFNKEARArylAFATSPEAL-------WSGNFRDLNASVTRMATLAEGGRIT 432
|
...
gi 1447622397 374 VNH 376
Cdd:COG4650 433 VAL 435
|
|
| FleQ |
pfam06490 |
Flagellar regulatory protein FleQ; This domain is found at the N terminus of a subset of ... |
6-115 |
4.52e-30 |
|
Flagellar regulatory protein FleQ; This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to pfam00072, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (pfam00072).
Pssm-ID: 428975 [Multi-domain] Cd Length: 108 Bit Score: 113.05 E-value: 4.52e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 6 KLLVIEDDPQIRLNLSNILEFVGEHCEAIESSQIKDIDCSRLWGGCII--GSLKSEQLTDEIAQWltkANYIPLLMANKQ 83
Cdd:pfam06490 1 KILVIDDDAERRHDLSTILEFLGEQCEAISSEDLSAALWSSRWEALAVilGSVSAAELLKALAKW---DPHLPVLLLGET 77
|
90 100 110
....*....|....*....|....*....|..
gi 1447622397 84 PYSLeEFTQYVGELESPLNYPQLSDALRHCKE 115
Cdd:pfam06490 78 DDAL-ELANVIGTLEEPLNYPQLTDLLHRCQV 108
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
138-299 |
1.64e-26 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 104.92 E-value: 1.64e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 138 VGQSHGIQEVRHLIEQVSGteANVLILGESGTGKEVVARNIHYHSARRNGPFVPINCGAIPADLLESELFGHEkgaftgA 217
Cdd:cd00009 1 VGQEEAIEALREALELPPP--KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF------L 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 218 ITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQErcferVGGNTTIKVNVRVVSATHRNlenmiDDESFREDLYYR 297
Cdd:cd00009 73 VRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLET-----LNDLRIDRENVRVIGATNRP-----LLGDLDRALYDR 142
|
..
gi 1447622397 298 LN 299
Cdd:cd00009 143 LD 144
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
160-360 |
6.70e-25 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 108.66 E-value: 6.70e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 160 NVLILGESGTGKEVVARNIhYHSARRNG------PFVPINCgaipAD------LLESELFGHEKGAFTGAITARKGRFEL 227
Cdd:COG1221 132 HTLILGPTGVGKSFFAELM-YEYAIEIGvlpedaPFVVFNC----ADyannpqLLMSQLFGYVKGAFTGADKDKEGLIEK 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 228 AEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVG-GNTTIKVNVRVVSATHRNLEnmiddESFredlyyrLNVF----P 302
Cdd:COG1221 207 ADGGILFLDEVHRLPPEGQEMLFTFMDKGIYRRLGeTEKTRKANVRIIFATTEDPE-----SSL-------LKTFlrriP 274
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1447622397 303 --IEMPALKDRKddipllLQE------LMTRMEAEG-GQPFCFTPRAVNSLMEHNWPGNVRELANLV 360
Cdd:COG1221 275 mvIKLPSLEERS------LEErlelikHFFKEEAKRlNKPIKVSKEVLKALLLYDCPGNIGQLKSDI 335
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
138-308 |
1.99e-22 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 92.79 E-value: 1.99e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 138 VGQSHGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSARRNGPFVPINCGAIPADLLESelfghekgaftga 217
Cdd:pfam14532 1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAPLELLEQ------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 218 itarkgrfelAEGGTLFLDEIGDMPMSMQVKLLRVLQ--ERCfervggnttikvNVRVVSATHRNLENMIDDESFREDLY 295
Cdd:pfam14532 68 ----------AKGGTLYLKDIADLSKALQKGLLLLLAkaEGY------------RVRLVCTSSKDLPQLAAAGLFDEQLY 125
|
170
....*....|...
gi 1447622397 296 YRLNVFPIEMPAL 308
Cdd:pfam14532 126 FELSALRLHVPPL 138
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
160-298 |
1.78e-12 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 65.09 E-value: 1.78e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 160 NVLILGESGTGKEVVARNIHYHSARRNGPFVPINCGAIPADLLESELFGHEKGAFTGAITARKGR--FELAEG---GTLF 234
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRlaLALARKlkpDVLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1447622397 235 LDEIGDMPMSMQVKLLRVLQErcfERVGGNTTIKVNVRVVSATHR--NLENMIDDESFREDLYYRL 298
Cdd:smart00382 84 LDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNDekDLGPALLRRRFDRRIVLLL 146
|
|
| HTH_8 |
pfam02954 |
Bacterial regulatory protein, Fis family; |
444-483 |
5.78e-11 |
|
Bacterial regulatory protein, Fis family;
Pssm-ID: 427077 [Multi-domain] Cd Length: 40 Bit Score: 57.02 E-value: 5.78e-11
10 20 30 40
....*....|....*....|....*....|....*....|
gi 1447622397 444 LADLEVNMINQALEAQGGVVARAADMLGMRRTTLVEKMRK 483
Cdd:pfam02954 1 LEEVEKELIEAALERTGGNKSKAARLLGISRRTLYRKLKK 40
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
160-311 |
1.88e-09 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 55.76 E-value: 1.88e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 160 NVLILGESGTGKEVVARniHYHSARRNGPFVPINCgaiPADLLESELFGH-----EKGAFTGAITARKGRfelaEGGTLF 234
Cdd:pfam07728 1 GVLLVGPPGTGKTELAE--RLAAALSNRPVFYVQL---TRDTTEEDLFGRrnidpGGASWVDGPLVRAAR----EGEIAV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447622397 235 LDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKV---NVRVVSATHrnlenmiddesfreDLYYRLNVFPiemPALKDR 311
Cdd:pfam07728 72 LDEINRANPDVLNSLLSLLDERRLLLPDGGELVKAapdGFRLIATMN--------------PLDRGLNELS---PALRSR 134
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
137-194 |
1.12e-05 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 45.57 E-value: 1.12e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1447622397 137 LVGQSHGIQEVRHLIEQV-SGTEANVLILGESGTGKEVVARNIHYHSARRNGPFVPINC 194
Cdd:pfam13191 2 LVGREEELEQLLDALDRVrSGRPPSVLLTGEAGTGKTTLLRELLRALERDGGYFLRGKC 60
|
|
| Fis |
COG2901 |
DNA-binding protein Fis (factor for inversion stimulation) [Transcription]; |
443-486 |
7.41e-04 |
|
DNA-binding protein Fis (factor for inversion stimulation) [Transcription];
Pssm-ID: 442146 [Multi-domain] Cd Length: 83 Bit Score: 38.26 E-value: 7.41e-04
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 1447622397 443 LLADLEVNMINQALEAQGGVVARAADMLGMRRTTLVEKMRKYNM 486
Cdd:COG2901 39 VLAEVEKPLLETVLEHTRGNQSRAAEMLGINRNTLRKKLKQYGL 82
|
|
| HTH_50 |
pfam18024 |
Helix-turn-helix domain; The TyrR protein of Haemophilus influenzae is a 36-kD transcription ... |
437-487 |
4.20e-03 |
|
Helix-turn-helix domain; The TyrR protein of Haemophilus influenzae is a 36-kD transcription factor whose major function is to control the expression of genes important in the biosynthesis and transport of aromatic amino acids. This entry represents the C-terminal helix-turn-helix DNA-binding domain of TyrR and related proteins.
Pssm-ID: 407862 [Multi-domain] Cd Length: 50 Bit Score: 35.47 E-value: 4.20e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1447622397 437 GVNLKELLADLEVNMINQALEaQGGVVARAADMLGMRRTTLVEKMRKYNMQ 487
Cdd:pfam18024 1 EMSLKEYVSYIERELIGAAYE-NYKSARKVAKALGLSHTTIANKMKRYGIS 50
|
|
| fis |
PRK00430 |
DNA-binding transcriptional regulator Fis; |
444-486 |
6.98e-03 |
|
DNA-binding transcriptional regulator Fis;
Pssm-ID: 179020 [Multi-domain] Cd Length: 95 Bit Score: 35.81 E-value: 6.98e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1447622397 444 LADLEVNMINQALEAQGGVVARAADMLGMRRTTLVEKMRKYNM 486
Cdd:PRK00430 52 LAEVEAPLLDMVMQYTRGNQTRAALMLGINRGTLRKKLKKYGM 94
|
|
| |
