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Conserved domains on  [gi|1447645637|gb|AXM85209|]
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flagellin [Vibrio anguillarum]

Protein Classification

flagellin( domain architecture ID 11483458)

flagellin polymerizes to form the filaments of bacterial flagella; similar to Vibrio cholerae flagellins A-E, and to Pseudomonas aeruginosa A-type flagellin FliC

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK08869 PRK08869
polar flagellin E;
2-377 0e+00

polar flagellin E;


:

Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 584.97  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637   2 AVNVNTNVSAMTAQRYLNGASNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGA 81
Cdd:PRK08869    1 AVNVNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637  82 MNETTNILQRMRDLSLQSANGSNSKADRVAIQEEVTALNDELNRIAETTSFGGNKLLNGTFETKSFQIGADNGEAVMLSL 161
Cdd:PRK08869   81 MNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGSFGTKSFQIGANSGEAVSLDL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 162 NNMRSDNAMMGGTSYQAANGKDKDWSVQAGSNDLQITLKDTSGTDQTINISAKEGDDIEELATYINGQTDMVKASVDDEG 241
Cdd:PRK08869  161 KSMRSDAKIMGGVSYDAEGGADKDWTVGAGNTDLNVSFDDKGGETQAITINAKAGDDIEELATYINGQTDGVGASVSEDG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 242 KLQVFAGSNKVEGPVTFAGGLAGELGMQAGQAVTVDVIDVTSVGGAQESVAIVDAALQFVDSHRAQLGAFQNRFSHAISN 321
Cdd:PRK08869  241 KLQLFAAGQKVSGGVSFSGGLAAELGLGNATAVTVDDLDISTVGGAQQAVAVIDAALKYVDSHRADLGAFQNRFTHAINN 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1447645637 322 LDNINENVSASKSRIKDTDFAKETTALTKSQILSQASSSVLAQAKQAPQAALSLLG 377
Cdd:PRK08869  321 LQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALSLLQ 376
 
Name Accession Description Interval E-value
PRK08869 PRK08869
polar flagellin E;
2-377 0e+00

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 584.97  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637   2 AVNVNTNVSAMTAQRYLNGASNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGA 81
Cdd:PRK08869    1 AVNVNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637  82 MNETTNILQRMRDLSLQSANGSNSKADRVAIQEEVTALNDELNRIAETTSFGGNKLLNGTFETKSFQIGADNGEAVMLSL 161
Cdd:PRK08869   81 MNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGSFGTKSFQIGANSGEAVSLDL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 162 NNMRSDNAMMGGTSYQAANGKDKDWSVQAGSNDLQITLKDTSGTDQTINISAKEGDDIEELATYINGQTDMVKASVDDEG 241
Cdd:PRK08869  161 KSMRSDAKIMGGVSYDAEGGADKDWTVGAGNTDLNVSFDDKGGETQAITINAKAGDDIEELATYINGQTDGVGASVSEDG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 242 KLQVFAGSNKVEGPVTFAGGLAGELGMQAGQAVTVDVIDVTSVGGAQESVAIVDAALQFVDSHRAQLGAFQNRFSHAISN 321
Cdd:PRK08869  241 KLQLFAAGQKVSGGVSFSGGLAAELGLGNATAVTVDDLDISTVGGAQQAVAVIDAALKYVDSHRADLGAFQNRFTHAINN 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1447645637 322 LDNINENVSASKSRIKDTDFAKETTALTKSQILSQASSSVLAQAKQAPQAALSLLG 377
Cdd:PRK08869  321 LQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALSLLQ 376
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
5-362 1.20e-48

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 164.65  E-value: 1.20e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637   5 VNTNVSAMTAQRYLNGASNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNE 84
Cdd:COG1344     3 ISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGALGE 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637  85 TTNILQRMRDLSLQSANGSNSKADRVAIQEEVTALNDELNRIAETTSFGGNKLLNGTfetksfqigadngeavmlslnnm 164
Cdd:COG1344    83 ITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGT----------------------- 139

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 165 rsdnammggtsyqaangkdkdwsvqagsndlqitlkdtsgtdqtinisakegddieelatyingqtdmvkasvddegklq 244
Cdd:COG1344       --------------------------------------------------------------------------------

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 245 vfagsnkvegpvtfagglagelgmqAGQAVTVDVIDVTSVGGAQESVAIVDAALQFVDSHRAQLGAFQNRFSHAISNLDN 324
Cdd:COG1344   140 -------------------------ATDTPPFQVDYQGDAGQRTAALGALDAALDNVSSARAELGARQNRLESAINNLSD 194

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1447645637 325 INENVSASKSRIKDTDFAKETTALTKSQILSQASSSVL 362
Cdd:COG1344   195 LSENLTAALSRLEDADMAEAITRLTKLQTLLQAALAAL 232
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 5-142 1.06e-38

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 135.16  E-value: 1.06e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637   5 VNTNVSAMTAQRYLNGASNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNE 84
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1447645637  85 TTNILQRMRDLSLQSANGSNSKADRVAIQEEVTALNDELNRIAETTSFGGNKLLNGTF 142
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAGIN 138
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 10-228 4.97e-19

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 86.63  E-value: 4.97e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637  10 SAMTAQRYLNGASNAQ---QTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNETT 86
Cdd:TIGR02550   4 TNMLYNNSLNSITNNQsrlAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALSSVG 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637  87 NILQRMRDLSLQSANGSNSKADRVAIQEEVTALNDELNRIAETTSFGGNKLLNGTFETKSFQIGADNGEAVMLSLNNMRS 166
Cdd:TIGR02550  84 DVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFSGTKTDTPPFSEDEGGEVTYNGDGGQRK 163

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1447645637 167 DNAMMGGTSYQAANGKDKDWSVQAGSNDLQITLKDTSGTDQTINISAKEGDDIEELATYING 228
Cdd:TIGR02550 164 VQVASNRSMPIGHPGDKVFMSIPNNDKSVFSTGDDLIDALKKLEDALSSGDAKAALSASLND 225
 
Name Accession Description Interval E-value
PRK08869 PRK08869
polar flagellin E;
2-377 0e+00

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 584.97  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637   2 AVNVNTNVSAMTAQRYLNGASNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGA 81
Cdd:PRK08869    1 AVNVNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637  82 MNETTNILQRMRDLSLQSANGSNSKADRVAIQEEVTALNDELNRIAETTSFGGNKLLNGTFETKSFQIGADNGEAVMLSL 161
Cdd:PRK08869   81 MNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGSFGTKSFQIGANSGEAVSLDL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 162 NNMRSDNAMMGGTSYQAANGKDKDWSVQAGSNDLQITLKDTSGTDQTINISAKEGDDIEELATYINGQTDMVKASVDDEG 241
Cdd:PRK08869  161 KSMRSDAKIMGGVSYDAEGGADKDWTVGAGNTDLNVSFDDKGGETQAITINAKAGDDIEELATYINGQTDGVGASVSEDG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 242 KLQVFAGSNKVEGPVTFAGGLAGELGMQAGQAVTVDVIDVTSVGGAQESVAIVDAALQFVDSHRAQLGAFQNRFSHAISN 321
Cdd:PRK08869  241 KLQLFAAGQKVSGGVSFSGGLAAELGLGNATAVTVDDLDISTVGGAQQAVAVIDAALKYVDSHRADLGAFQNRFTHAINN 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1447645637 322 LDNINENVSASKSRIKDTDFAKETTALTKSQILSQASSSVLAQAKQAPQAALSLLG 377
Cdd:PRK08869  321 LQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALSLLQ 376
PRK06819 PRK06819
FliC/FljB family flagellin;
1-376 3.15e-76

FliC/FljB family flagellin;


Pssm-ID: 235867 [Multi-domain]  Cd Length: 376  Bit Score: 240.06  E-value: 3.15e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637   1 MAVNVNTNVSAMTAQRYLNGASNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEG 80
Cdd:PRK06819    1 MAAVINTNSLSLLTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISIAQTTEG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637  81 AMNETTNILQRMRDLSLQSANGSNSKADRVAIQEEVTALNDELNRIAETTSFGGNKLLNGTfETKSFQIGADNGEAVMLS 160
Cdd:PRK06819   81 ALNEINNNLQRVRELTVQAQNGSNSSSDLDSIQDEISQRLAEIDRVSDQTQFNGVKVLAED-TTMSIQVGANDGETIDIN 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 161 LNNMRSDNAMMGGTSYQAANGKDKDWSVQAGSNDLQITLKDTSGTDQTINISAKEGDDIEELATYINGQTDMVKASVDDE 240
Cdd:PRK06819  160 LQKIDSKSLGLGSFSVSGVSGALTSLTFTDTALDTSVTGVTTTTALDFSDISTFAKGATVHGIGDVGTDGAYADGYVIRT 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 241 GKLQVFAGS-NKVEGPVTFAGGLAGELGMQAGQAVTVDVIDVTSVgGAQESVAIVDAALQFVDSHRAQLGAFQNRFSHAI 319
Cdd:PRK06819  240 TDGKQYKGEvDATNGKVTFADDANGDPITDATKLEAAAQFSPAGK-ATASPLETLDDALKQVDGLRSSLGAVQNRFESTV 318

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1447645637 320 SNLDNINENVSASKSRIKDTDFAKETTALTKSQILSQASSSVLAQAKQAPQAALSLL 376
Cdd:PRK06819  319 TNLNNTVTNLSSARSRIEDADYATEVSNMSRAQILQQAGTSVLAQANQVPQTVLSLL 375
PRK12806 PRK12806
flagellin; Provisional
 1-377 5.06e-66

flagellin; Provisional


Pssm-ID: 183761 [Multi-domain]  Cd Length: 475  Bit Score: 216.86  E-value: 5.06e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637   1 MAVNVNTNVSAMTAQRYLNGASNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEG 80
Cdd:PRK12806    1 MAQVINTNVASLTAQRNLGVSGNMMQTSIQRLSSGLRINSAKDDAAGLAISQRMTAQIRGMNQAVRNANDGISLAQVAEG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637  81 AMNETTNILQRMRDLSLQSANGSNSKADRVAIQEEVTALNDELNRIAETTSFGGNKLLNGTFETKSFQIGADNGEAVMLS 160
Cdd:PRK12806   81 AMQETTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELERIAQNTEFNGQRILDGSFSGASFQVGANSNQTINFS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 161 LNNMRSD----NAMMGGTSYQAANGKD-----------------------------KDWSVQAGSNDLQIT-LKDTSGTD 206
Cdd:PRK12806  161 IGSIKASsiggIATATGTEVAGAAATDitiaigggaatsinssanftgalngqdatSAYAKAAAINDAGIGgLSVTASTS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 207 QTINISAKEGDDIEELATYINGQT-----------------DMVKASVDDEGKLQVFAGSNKV----------------- 252
Cdd:PRK12806  241 GTQAVGAIGGTAGDTYNLTINGVAiytnldvataltnsdlrDAINGVSNQTGVVASLNGGNMTltaadgrnitvtesgtg 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 253 ---------EGPVTFAGGLAGELGMQAGQA--------------------VTVDVIDVTSVGGAQESVAIVDAALQFVDS 303
Cdd:PRK12806  321 ftagtdgltVTGGAFDGALRGTLSISAVDTiaiggtvaniglsaniskdtVGIDSLDVSTASGAQTAIKRIDAALNSVNS 400

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1447645637 304 HRAQLGAFQNRFSHAISNLDNINENVSASKSRIKDTDFAKETTALTKSQILSQASSSVLAQAKQAPQAALSLLG 377
Cdd:PRK12806  401 NRANMGALQNRFESTIANLQNVSDNLSAARSRIQDADYAAEMASLTKNQILQQAGTAMLAQANSLPQSVLSLLG 474
PRK12802 PRK12802
flagellin; Provisional
 1-377 5.72e-66

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 210.89  E-value: 5.72e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637   1 MAVNVNTNVSAMTAQRYLNGASNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEG 80
Cdd:PRK12802    1 MALTVNTNITSLTVQKNLSRASDALSTSMTRLSSGLKINSAKDDAAGLQIATRQTSQIRGQTQAIKNANDGISIAQTAEG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637  81 AMNETTNILQRMRDLSLQSANGSNSKADRVAIQEEVTALNDELNRIAETTSFGGNKLLNGTFETKSFQIGADNGEAVmls 160
Cdd:PRK12802   81 ALQESTNILQRMRELAVQSRNDSNDSTDRAALNKEFTTMLDEITRIATSTTLNGKNLLDGSAGTMTFQVGANTGQSN--- 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 161 lnnmrsdnammggtsyqaangkdkdwsvqagsndlQITLKDTSGTDQTinisakegddieelatyingqtdmvkasvdde 240
Cdd:PRK12802  158 -----------------------------------QITFGLSASFDAT-------------------------------- 170

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 241 gklqvfagsnkvegpvtfagglagelGMQAGQAVTVDVIDVTSV-GGAQESVAIVDAALQFVDSHRAQLGAFQNRFSHAI 319
Cdd:PRK12802  171 --------------------------GLGVGSGTLITGADSAAAeTNAQAAITAIDAALQTINTTRADLGAAQNRLQSTI 224

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1447645637 320 SNLDNINENVSASKSRIKDTDFAKETTALTKSQILSQASSSVLAQAKQAPQAALSLLG 377
Cdd:PRK12802  225 SNLQNINENASAARGRVQDTDFAAETAQLTKQQTLQQASTSVLAQANQLPSAVLKLLQ 282
PRK12804 PRK12804
flagellin; Provisional
 5-376 1.22e-52

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 176.73  E-value: 1.22e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637   5 VNTNVSAMTAQRYLNGASNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNE 84
Cdd:PRK12804    3 INHNIAALNTLNRLSANNGASQKNMEKLSSGLKINRAGDDAAGLAISEKMRGQIRGLEMASKNAQDGISLIQTAEGALTE 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637  85 TTNILQRMRDLSLQSAN-GSNSKADRVAIQEEVTALNDELNRIAETTSFGGNKLLNGTF---------ETKSFQIGADNG 154
Cdd:PRK12804   83 THSILQRVRELVVQAGNtGTQDGTDLGAIQDEIKALVDEIDGISDRTEFNGKKLLDGTFkpaapaagtKSLTFQIGANAA 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 155 EAVMLSLNNMRSDNAmmggtsyqAANGKDKDWSVQAGSNDLQITLKDTSGTDQTinisakegddieelatyingqtdmvk 234
Cdd:PRK12804  163 QQLSVNIEAMSADAL--------GVKDTDGTLVTGKSVSDIDVTKFANAAAAAD-------------------------- 208

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 235 asvddegklqvfagsnkvegpvtfagglagelgmqagqavtvdvidvtsvGGAQESVAIVDAALQFVDSHRAQLGAFQNR 314
Cdd:PRK12804  209 --------------------------------------------------GGFDDQLKIVDGAIKQVSDQRSKLGAVQNR 238

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1447645637 315 FSHAISNLDNINENVSASKSRIKDTDFAKETTALTKSQILSQASSSVLAQAKQAPQAALSLL 376
Cdd:PRK12804  239 LEHTINNLGASGENLTAAESRIRDVDMAKEMSEFTKNNILSQASQAMLAQANQQPQNVLQLL 300
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
5-362 1.20e-48

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 164.65  E-value: 1.20e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637   5 VNTNVSAMTAQRYLNGASNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNE 84
Cdd:COG1344     3 ISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGALGE 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637  85 TTNILQRMRDLSLQSANGSNSKADRVAIQEEVTALNDELNRIAETTSFGGNKLLNGTfetksfqigadngeavmlslnnm 164
Cdd:COG1344    83 ITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGT----------------------- 139

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 165 rsdnammggtsyqaangkdkdwsvqagsndlqitlkdtsgtdqtinisakegddieelatyingqtdmvkasvddegklq 244
Cdd:COG1344       --------------------------------------------------------------------------------

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 245 vfagsnkvegpvtfagglagelgmqAGQAVTVDVIDVTSVGGAQESVAIVDAALQFVDSHRAQLGAFQNRFSHAISNLDN 324
Cdd:COG1344   140 -------------------------ATDTPPFQVDYQGDAGQRTAALGALDAALDNVSSARAELGARQNRLESAINNLSD 194

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1447645637 325 INENVSASKSRIKDTDFAKETTALTKSQILSQASSSVL 362
Cdd:COG1344   195 LSENLTAALSRLEDADMAEAITRLTKLQTLLQAALAAL 232
PRK12807 PRK12807
flagellin; Provisional
 5-362 5.60e-42

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 148.43  E-value: 5.60e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637   5 VNTNVSAMTAQRYLNGASNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNE 84
Cdd:PRK12807    3 INTNINSMRTQEYMRQNQDKMNVSMNRLSSGKRINSAADDAAGLAIATRMRARQSGLEKASQNTQDGMSLIRTAESAMNS 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637  85 TTNILQRMRDLSLQSANGSNSKADRVAIQEEVTALNDELNRIAETTSFGGNKLLngtfetksfqigadngeavmlslnnm 164
Cdd:PRK12807   83 VSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQIDYIAKNTEFNDKNLL-------------------------- 136

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 165 rSDNAMMGGTSYQAANGKdkdwsvqagsndLQITLKDTSGTDQTINISAKEgddieelatyingqtdmVKASvddEGKLQ 244
Cdd:PRK12807  137 -AGTGAVTIGSTSISGAE------------ISIETLDSSATNQQITIKLAN-----------------TTAE---KLGID 183

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 245 VFAGSNKVEGPVTfagglagelgmqagqavtvdvidvtsvggAQESVAIVDAALQFVDSHRAQLGAFQNRFSHAISNLDN 324
Cdd:PRK12807  184 ATTSNISISGAAS-----------------------------ALAAISALNTALNTVAGNRATLGATLNRLDRNVENLNN 234

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1447645637 325 INENVSASKSRIKDTDFAKETTALTKSQILSQASSSVL 362
Cdd:PRK12807  235 QATNMASAASQIEDADMAKEMSEMTKFKILNEAGISML 272
PRK08026 PRK08026
FliC/FljB family flagellin;
1-376 1.04e-41

FliC/FljB family flagellin;


Pssm-ID: 236140 [Multi-domain]  Cd Length: 529  Bit Score: 153.36  E-value: 1.04e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637   1 MAVNVNTNVSAMTAQRYLNGASNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEG 80
Cdd:PRK08026    1 MAQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISVAQTTEG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637  81 AMNETTNILQRMRDLSLQSANGSNSKADRVAIQEEVTALNDELNRIAETTSFGGNKLL--NGTFetkSFQIGADNGEAVM 158
Cdd:PRK08026   81 ALSEINNNLQRVRELTVQAATGTNSQSDLDSIQDEIKSRLDEIDRVSGQTQFNGVNVLakDGSM---KIQVGANDGETIT 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 159 LSLNNMRSD----------------------------NAMMGGTSYQAA------------------------------- 179
Cdd:PRK08026  158 IDLKKIDSDtlgldgfnvngkgtvantaatvsdltaaGATLDTTGLYDVktknaalttadalaklgdgdkvtatatggdy 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 180 --NGKDKDWSVQAGSNDLQITLKDTSGTDQTI-------NISAKEGDDIEELATYINGQTDMV--------KASVDD--- 239
Cdd:PRK08026  238 tyNAKSGKYQAADLAATLTPDVGGTAGASYTIkdgtyevNVDSDGKITLGGSALYIDATGNLTtnnagaatKATLDAlkk 317

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 240 --EGKLQVFAGSNKVEGPVTFAGGLAGELGM------------------------------------------QAGQAVT 275
Cdd:PRK08026  318 taSEGAATAKAALAAAGVTVADGVTAKTVKMsytdkngkvidggyavktgddyyaadydeitgaisatttyytAKDGTTK 397

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 276 VDVIDVTSVGGAQESVAI-----------------------------VDAALQFVDSHRAQLGAFQNRFSHAISNLDNIN 326
Cdd:PRK08026  398 TAANKLGGADGKTEVVTIdgktyvasdgkqttlaeaaatttenplaaLDAAIASIDKFRSSLGAVQNRLDSAVTNLNNTT 477

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|
gi 1447645637 327 ENVSASKSRIKDTDFAKETTALTKSQILSQASSSVLAQAKQAPQAALSLL 376
Cdd:PRK08026  478 TNLSEAQSRIQDADYATEVSNMSKAQIIQQAGNSVLAKANQVPQQVLSLL 527
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 5-142 1.06e-38

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 135.16  E-value: 1.06e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637   5 VNTNVSAMTAQRYLNGASNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNE 84
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1447645637  85 TTNILQRMRDLSLQSANGSNSKADRVAIQEEVTALNDELNRIAETTSFGGNKLLNGTF 142
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAGIN 138
PRK12584 PRK12584
flagellin A; Reviewed
 1-376 6.50e-34

flagellin A; Reviewed


Pssm-ID: 237146 [Multi-domain]  Cd Length: 510  Bit Score: 131.57  E-value: 6.50e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637   1 MAVNVNTNVSAMTAQRYLNGASNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEG 80
Cdd:PRK12584    1 MAFQVNTNINALNAHVQSALTQNALKTSLEKLSSGLRINKAADDASGMTIADSLRSQASSLGQAIANTNDGMGIIQVADK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637  81 AMNETTNILQRMRDLSLQSANGSNSKADRVAIQEEVTALNDELNRIAETTSFGGNKLLNGTFETKSFQIGADNGEAVMLS 160
Cdd:PRK12584   81 AMDEQLKILDTIKVKATQAAQDGQTTESRKAIQSDIVRLIQGLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKAS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 161 LNNMRSD---------NAMMGGTS-----YQAANG---------------------------KDKD-------WSVQAGS 192
Cdd:PRK12584  161 IGSTTSDkigqvriatGALITASGdisltFKQVDGvndvtlesvkvsssagtgigvlaevinKNSDrtgvkayASVITTS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 193 ND--LQITLKDTSGTDQTIN--ISAKEGDDIEELATYINGQTDM--VKASVDDEGKLQV--------------------- 245
Cdd:PRK12584  241 DVavQSGSLSNLTLNGIHIGniADIKKNDSDGRLVAAINAVTSEtgVEAYTDQKGRLNLrsidgrgieiktdsvsngpsa 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 246 -----------------------------------------------FAGSNKVEGPVT-------FAGGLAGELGMQAG 271
Cdd:PRK12584  321 ltmvnggqdltkgstnygrlsltrldardinvvsasdsqhlgfsaigFGESQVAETTVNlrdvtgnFNANVKSASGANYN 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 272 QAVTVDVID----VTSVGGAQESVAIVDAALQFVDSHRAQLGAFQNRFSHAISNLDNINENVSASKSRIKDTDFAKETTA 347
Cdd:PRK12584  401 AVIASGNQSlgsgVTTLRGAMVVMDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRDVDFAEESAN 480

                         490       500
                  ....*....|....*....|....*....
gi 1447645637 348 LTKSQILSQASSSVLAQAKQAPQAALSLL 376
Cdd:PRK12584  481 FNKNNILAQSGSYAMSQANTVQQNILRLL 509
PRK13588 PRK13588
flagellin B; Provisional
 1-376 2.31e-33

flagellin B; Provisional


Pssm-ID: 237440 [Multi-domain]  Cd Length: 514  Bit Score: 129.99  E-value: 2.31e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637   1 MAVNVNTNVSAMTAqrYLNGASNAQ--QTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTA 78
Cdd:PRK13588    1 MSFRINTNIAALNA--HAVGVQNNRdlSSSLEKLSSGLRINKAADDASGMAIADSLRSQSANLGQAIRNANDAIGMVQTA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637  79 EGAMNETTNILQRMRDLSLQSANGSNSKADRVAIQEEVTALNDELNRIAETTSFGGNKLLNGTFETKSFQIGADNGEAVM 158
Cdd:PRK13588   79 DKAMDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVK 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 159 LSLNNMRSDNamMGGTSYQAANGKDKDWSVQAGSNDL---QITLKDTSGTD----QTINISAKEGDDIEELATYINGQTD 231
Cdd:PRK13588  159 ASIGATSSDK--IGHVRMETSSFSGEGMLASAAAQNLtevGLNFKQVDGVNdykiETVRISTSAGTGIGALSEIINRFSD 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 232 M-----------------------------------------------------------VKASVDDEGKLQVFA----- 247
Cdd:PRK13588  237 TlgvrasynvmatggtpvqsgtvreltingveigtvndvhkndadgrlinainsvkdrtgVEASLDIQGRINLTSidgra 316

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 248 -------GSNKVEGPVTFAG--------------------------------------------------------GLAG 264
Cdd:PRK13588  317 isvhaasASGQVFGGGNFAGisgtqhavvgrltltrtdardiivsgvnfshvgfhsaqgvaeytvnlravrgifdaNVAS 396

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 265 ELGMQAGQAVTVDVID-----VTSVGGAQESVAIVDAALQFVDSHRAQLGAFQNRFSHAISNLDNINENVSASKSRIKDT 339
Cdd:PRK13588  397 AAGANANGAQAETNSQgigagVTSLKGAMIVMDMAESARTQLDKIRSDMGSVQMQLVSTINNISVTQVNVKAAESQIRDV 476

                         490       500       510
                  ....*....|....*....|....*....|....*..
gi 1447645637 340 DFAKETTALTKSQILSQASSSVLAQAKQAPQAALSLL 376
Cdd:PRK13588  477 DFAEESANFSKYNILAQSGSFAMAQANAVQQNVLRLL 513
PRK12803 PRK12803
flagellin; Provisional
 5-376 2.25e-32

flagellin; Provisional


Pssm-ID: 183758 [Multi-domain]  Cd Length: 335  Bit Score: 124.15  E-value: 2.25e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637   5 VNTNVSAMTAQRylNGASNAQQTS--MERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAM 82
Cdd:PRK12803    3 INHNTSAINASR--NNSINAANLSktQEKLSSGHRINRASDDAAGMGVAGKINAQIRGLSQASRNTSKAINFIQTTEGNL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637  83 NETTNILQRMRDLSLQSANGSNSKADRVAIQEEVTALNDELNRIAETTSFGGNKLLNGTFETKSFQIGADNGEAVMlSLN 162
Cdd:PRK12803   81 NEVEKVLVRMKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIADQAQYNQMHMLSNKSAAQNVRTAEELGMQPA-KIN 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 163 NMRSDNAMMGGTSYQAANGKDKDWSVqagsndlqitlkdtsgtdqTINISAKegddieELATYINGQTDMVKASVDDEGK 242
Cdd:PRK12803  160 TPASLSGSQASWTLRVHVGANQDEAI-------------------AVNIYAA------NVANLFSGEGAQQAAPVQEGAQ 214

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 243 LQvfaGSNKVEGPVTfagglagelgmQAGQAVTVDVIDVTSVGGAQESVAIVDAALQFVDSHRAQLGAFQNRFSHAISNL 322
Cdd:PRK12803  215 QE---GAQAAPAPAA-----------APAQGGVNSPVNVTTTVDANMSLAKIENAIRMISDQRANLGAFQNRLESIKAST 280

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1447645637 323 DNINENVSASKSRIKDTDFAKETTALTKSQILSQASSSVLAQAKQAPQAALSLL 376
Cdd:PRK12803  281 EYAIENLKASYAQIKDATMTDEVVASTTNSILTQSAMAMIAQANQVPQYVLSLL 334
PRK12808 PRK12808
flagellin; Provisional
 5-362 2.49e-30

flagellin; Provisional


Pssm-ID: 237212 [Multi-domain]  Cd Length: 476  Bit Score: 120.83  E-value: 2.49e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637   5 VNTNVSAMTAQRYLNGASNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNE 84
Cdd:PRK12808    3 INTNINSMRTQEYMRQNQAKMSNAMDRLSSGKRINNASDDAAGLAIATRMRARESGLGVAANNTQDGMSLIRTADSAMNS 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637  85 TTNILQRMRDLSLQSANGSNSKADRVAIQEEVTALNDELNRIAETTSFGGNKLLNGTFET---------KSFQIGADNGE 155
Cdd:PRK12808   83 VSNILLRMRDIANQSANGTNTDKNQAALQKEFAELQKQITYIADNTQFNDKNLLNSNSSIniqtldssdGDKQIGIDLKS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 156 AVM--LSLNNM-----------------RSDNAMMGGT-------------------------SYQAANGKDKDWSVQAG 191
Cdd:PRK12808  163 ATLeaLGINDLsigantdieavstkiaaLDKNTIAKATveakaafdkakddtkaedsnildaaADGFKDGKADDAAKDVE 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 192 SNDLQITLKDTSGT-------------------DQTINISAKEGDDIEEL-----------------ATYINGQTDMV-- 233
Cdd:PRK12808  243 AIKTALSAFTGAATleeaeaaktafevaqkdlvDTYTKKAALTKDAVADLdtakttstrskaakdlvAAYDKAKSGAKpn 322

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 234 -KASVDDEGKLQVFAGSNKVEGPVTF-AGGLAGELGMQAGQAVTVDVIDV--------TSVGGAQESVAIVDAALQFVDS 303
Cdd:PRK12808  323 dVAKAYLEAKMAYEKDNNAIDGKSKLeAADDALEKDAIKTDASKVLVPKLeaakkattNSKADSLDAVKAIDEALKTVAD 402

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1447645637 304 HRAQLGAFQNRFSHAISNLDNINENVSASKSRIKDTDFAKETTALTKSQILSQASSSVL 362
Cdd:PRK12808  403 NRATLGATLNRLDFNVNNLKSQSSSMASAASQIEDADMAKEMSEMTKFKILNEAGISML 461
PRK08411 PRK08411
flagellin; Reviewed
 1-231 6.03e-30

flagellin; Reviewed


Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 120.86  E-value: 6.03e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637   1 MAVNVNTNVSAMTAQRYLNGASNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEG 80
Cdd:PRK08411    1 MGFRINTNVAALNAKANSDLNAKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637  81 AMNETTNILQRMRDLSLQSANGSNSKADRVAIQEEVTALNDELNRIAETTSFGGNKLLNGTFETKSFQIGADNGEAVMLS 160
Cdd:PRK08411   81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFTNQEFQIGASSNQTVKAT 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1447645637 161 LNNMRSDNamMGGTSYQAAngkdkdwSVQAGSNDLQITLKDTSGTD----QTINISAKEGDDIEELATYINGQTD 231
Cdd:PRK08411  161 IGATQSSK--IGVTRFETG-------ARITTSGVVQLTIKNYNGIDdfkfQNVVISTSVGTGLGALAEEINKNAD 226
PRK13589 PRK13589
flagellin A;
1-231 9.40e-29

flagellin A;


Pssm-ID: 172158 [Multi-domain]  Cd Length: 576  Bit Score: 117.44  E-value: 9.40e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637   1 MAVNVNTNVSAMTAQRYLNGASNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEG 80
Cdd:PRK13589    1 MGFRINTNIGALNAHANSVVNSRELDKSLSRLSSGLRINSAADDASGMAIADSLRSQAATLGQAINNGNDAIGILQTADK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637  81 AMNETTNILQRMRDLSLQSANGSNSKADRVAIQEEVTALNDELNRIAETTSFGGNKLLNGTFETKSFQIGADNGEAVMLS 160
Cdd:PRK13589   81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFTNQEFQIGASSNQTIKAT 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1447645637 161 LNNMRSdnAMMGGTSYQAAngkdkdwSVQAGSNDLQITLKDTSGTD----QTINISAKEGDDIEELATYINGQTD 231
Cdd:PRK13589  161 IGATQS--SKIGVTRFETG-------GRSFTSGEVQLTIKNYNGIDdfkfQKVVISTSVGTGLGALAEEINKSAD 226
PRK12805 PRK12805
FliC/FljB family flagellin;
3-362 1.61e-25

FliC/FljB family flagellin;


Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 104.57  E-value: 1.61e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637   3 VNVNTNVSAMTAQRYLNGASNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAM 82
Cdd:PRK12805    1 MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637  83 NETTNILQRMRDLSLQSANGSNSKADRVAIQEEVTALNDELNRIAETTSFGGNKLLNgtfetksfqigadngeavmlsln 162
Cdd:PRK12805   81 SSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLD----------------------- 137

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 163 nmrsdnammggtsyQAANGKDKDWSVQAgsndlqitlkdTSGTDQTINIsakegddieelatyingqtDMVKASVDDEGK 242
Cdd:PRK12805  138 --------------QTATGAATQVSIQA-----------SDKANDLINI-------------------DLFNAKGLSAGT 173

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 243 LQVFAGSnkvegpvTFAGGLAgelgmqagqavtvdvIDVTSVGGAQESVAIVDAALQFVDSHRAQLGAFQNRFSHAISNL 322
Cdd:PRK12805  174 ITLGSGS-------TVAGYSA---------------LSVADADSSQEATEAIDELINNISNGRALLGAGMSRLSYNVSNV 231

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1447645637 323 DNINENVSASKSRIKDTDFAKETTALTKSQILSQASSSVL 362
Cdd:PRK12805  232 NNQSIATKASASSIEDADMAAEMSEMTKYKILTQTSISML 271
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 10-228 4.97e-19

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 86.63  E-value: 4.97e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637  10 SAMTAQRYLNGASNAQ---QTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNETT 86
Cdd:TIGR02550   4 TNMLYNNSLNSITNNQsrlAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALSSVG 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637  87 NILQRMRDLSLQSANGSNSKADRVAIQEEVTALNDELNRIAETTSFGGNKLLNGTFETKSFQIGADNGEAVMLSLNNMRS 166
Cdd:TIGR02550  84 DVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFSGTKTDTPPFSEDEGGEVTYNGDGGQRK 163

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1447645637 167 DNAMMGGTSYQAANGKDKDWSVQAGSNDLQITLKDTSGTDQTINISAKEGDDIEELATYING 228
Cdd:TIGR02550 164 VQVASNRSMPIGHPGDKVFMSIPNNDKSVFSTGDDLIDALKKLEDALSSGDAKAALSASLND 225
PRK06663 PRK06663
flagellar hook-associated protein 3;
14-361 1.01e-15

flagellar hook-associated protein 3;


Pssm-ID: 180648 [Multi-domain]  Cd Length: 419  Bit Score: 78.19  E-value: 1.01e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637  14 AQRYLNGASNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNETTNILQRMR 93
Cdd:PRK06663   13 LKSSLRRQESKMTKLQNQLSTGQRIQKLRDDPTAATHSIRYKSRLFKLDRYQKNIDDGKDRLRYAEGYLQSITNILQRAR 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637  94 DLSLQSANGSNSKADRVAIQEEVTALNDELNRIAETTS------FGGNKLLNGTFET---KSFQIGADNGEAVMLSLN-- 162
Cdd:PRK06663   93 ELAVQGANGTYQADDKKKIAKEIDELLEDLVDIANARGadgysiFSGTKIDTEPFEVirgNIKGLQGDAGSNQIIGVEyn 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 163 -NMRSDNAMMGGTSYQAAN--GKDKDWsvqaGSNDLQITLKDTSG----TDQTINISAKE-----GDDIEELATYINGQT 230
Cdd:PRK06663  173 gDIGEQNREIENGIYIPVNypGNKVFW----GTNQSIISSVDASGyvvkEDQKIYIDGVEihlsaGDTIDDIIAKINDSS 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 231 DMVKASVDDEGK-------------LQVFAGSNKVE--GPVTFAGGLAgELGMQAGQAVT----VDVI----------DV 281
Cdd:PRK06663  249 APVKASLDPVLNsislktttphqiwLEDEEGGTVLQdlGLITNATKEP-PYNYSNSAEVSgrsiFDSLiqlrdallnnDQ 327

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 282 TSVGGaqESVAIVDAALQFVDSHRAQLGAFQNRFSHAISNLDNINENVSASKSRIKDTDFAKETTALTKSQILSQASSSV 361
Cdd:PRK06663  328 ELIGG--RALGEIDEALDNLLTTLADLGAKENRLDRSYARISKEKLDMTEALSKNEDIDVTEAITNLNMLELAHQASLGV 405
flgL PRK07701
flagellar hook-associated protein FlgL; Validated
 5-155 4.06e-15

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 181087 [Multi-domain]  Cd Length: 298  Bit Score: 75.03  E-value: 4.06e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637   5 VNTNVSAMTAQRYLNGASNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNE 84
Cdd:PRK07701    3 VTQNMLANNFLRNINSNLEKLDKYQEQLSTGKKITRPSDDPVVAMKSLRYRTDLAEVEQYQKNASDAKSWLENTESALDQ 82

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1447645637  85 TTNILQRMRDLSLQSANGSNSKADRVAIQEEVTALNDELNRIAETTsFGGNKLLNGT-FETKSFQIGADNGE 155
Cdd:PRK07701   83 ATDILQRARELAVQAANGTNTQTDRQAIAQEIEQLKEQLIQIANTQ-YNGRYIFNGTkTDTPPVTDDGDNIE 153
Flagellin_C pfam00700
Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial ...
 291-376 2.13e-14

Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425827 [Multi-domain]  Cd Length: 86  Bit Score: 68.13  E-value: 2.13e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637 291 VAIVDAALQFVDSHRAQLGAFQNRFSHAISNLDNINENVSASKSRIKDTDFAKETTALTKSQILSQASSSVLAQAKQAPQ 370
Cdd:pfam00700   1 LDLIDEAITDLDSVRADLGAVQNRLESATTNLNNQQDNLKAAISRIEDVDPAEESTRMTKLQIQIQASYSLLSQANQLPQ 80


                  ....*.
gi 1447645637 371 AALSLL 376
Cdd:pfam00700  81 SLLNLL 86
flgL PRK08870
flagellar hook-associated protein FlgL; Reviewed
 6-141 2.31e-09

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 236345 [Multi-domain]  Cd Length: 404  Bit Score: 58.38  E-value: 2.31e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637   6 NTNVSAMTAQRylNGASNAQQtsmeRLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNET 85
Cdd:PRK08870   10 QQSVNSMLDQQ--SQLSQLQQ----QLSSGKKLLTPSDDPVAAAQAVNLSQQSALLDQYTKNINLARNRLQQEESTLGSV 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1447645637  86 TNILQRMRDLSLQSANGSNSKADRVAIQEEVTALNDELNRIAETTSFGGNKLLNGT 141
Cdd:PRK08870   84 EDLLQRARELVVQAGNGSLSDSDRQAIATELQGLRDQLLNLANSKDGSGNYLFAGT 139
flgL PRK12717
flagellar hook-associated protein 3;
13-123 2.62e-09

flagellar hook-associated protein 3;


Pssm-ID: 171679 [Multi-domain]  Cd Length: 523  Bit Score: 58.60  E-value: 2.62e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637  13 TAQRYLNGASNAQQT------SMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNETT 86
Cdd:PRK12717    5 TSQFYESSAANYQRNysnlvkTQEQASSGIRIQTAADDPVGAARLLQLQQQQAMLDQYSGNITTIKNSLTQEESTLTSIN 84

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1447645637  87 NILQRMRDLSLQSANGSNSKADRVAIQEEVTALNDEL 123
Cdd:PRK12717   85 DTLQRARELAVSAGNGGLTDADRKAIASELKQIEAQL 121
flgL PRK08412
flagellar hook-associated protein FlgL; Validated
 17-154 2.29e-05

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 236261 [Multi-domain]  Cd Length: 827  Bit Score: 46.35  E-value: 2.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637  17 YLNGASNAQQTSMERL-------SSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNETTNIL 89
Cdd:PRK08412    8 KYNQMNNYQNALQNKLndvntqiASGLKIQYGYQDSDVYNQNLKLQYEENTLDQGIDVASSAYTFTLNTDKALNEFSKTM 87

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1447645637  90 QRMRDLSLQSANGSNSKADRVAIQEEVTALNDELNRIAeTTSFGGNKLLNGT-FETKSFqigADNG 154
Cdd:PRK08412   88 EAFKTKLIQAANDVHSETSREAIANDLEALKEHMINLA-NTSIGGEFLFSGSkVDTKPI---DSNG 149
PRK14692 PRK14692
flagellar hook-associated protein FlgL;
13-141 4.68e-05

flagellar hook-associated protein FlgL;


Pssm-ID: 173155 [Multi-domain]  Cd Length: 749  Bit Score: 45.34  E-value: 4.68e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637  13 TAQRYLNGASNAQQTSMErLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNETTNILQRM 92
Cdd:PRK14692   12 SVNNSMGGQSALYQISQQ-LASGLKIQNSYEDASTYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKALQDMVKLLEDF 90

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1447645637  93 RDLSLQSANGSNSKADRVAIQEEVTALNDELNRIAeTTSFGGNKLLNGT 141
Cdd:PRK14692   91 KVKVTQAASDSNSQTSREAIAKELERIKESIVQLA-NTSVNGQYLFAGS 138
PRK12687 PRK12687
flagellin; Reviewed
 7-138 1.32e-04

flagellin; Reviewed


Pssm-ID: 105853 [Multi-domain]  Cd Length: 311  Bit Score: 43.50  E-value: 1.32e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637   7 TNVSAMTAQRYLNGASNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNETT 86
Cdd:PRK12687    6 TNTSAMTALQTLRNVSSSLATTQNRISTGYRVATASDNSAYWSIATTMRSDNEALSAVSDALGLGAATVDTMYTALTSVV 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1447645637  87 NILQR-MRDLSLQSANGSNSKADRVAIQEEVTALNDELNRIAETTSFGGNKLL 138
Cdd:PRK12687   86 GDSKSgLTALKAKLVAAREPGIDRTKIQSEITAIQNDLKNTAGLAVFNGENWL 138
flgL PRK08073
flagellar hook-associated protein 3;
5-153 1.64e-04

flagellar hook-associated protein 3;


Pssm-ID: 181222 [Multi-domain]  Cd Length: 287  Bit Score: 43.05  E-value: 1.64e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637   5 VNTNVSAMTAQRYLNGASNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNE 84
Cdd:PRK08073    3 VSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLSMSEDPLAASKSFAIQHSLANIEQMQKDVADSKNVLNQTENTLSG 82

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1447645637  85 TTNILQRMRDLSLQSANGSNSKADRVAIQEEVTALNDELNRIAETTS-----FGGNKLLNGTF-ETKSFQIGADN 153
Cdd:PRK08073   83 MSKSLTRVDQLVLQALNGTNDEKELKAIGAEIDQILKQVVYLANTKEqgryvFGGDSAEKKPFtEDGTYQGGTED 157
flgL PRK07192
flagellar hook-associated protein FlgL; Reviewed
 1-141 4.04e-04

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 235956 [Multi-domain]  Cd Length: 305  Bit Score: 41.93  E-value: 4.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447645637   1 MAVNVNTNVSAMTaqRYLNGASNAQQTSMERLSSGFKINSAKDDAAG------LQISNRLNVQSRgldvavRNANDGISI 74
Cdd:PRK07192    1 MRISTNTLYSTML--RSIQQLQAGLGKLQQQMSTGKRILTPSDDPIAsarlleLSREQSNNSQYA------DNIANLSNS 72

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1447645637  75 AQTAEGAMNETTNILQRMRDLSLQSANGSNSKADRVAIQEEVTALNDELNRIAETTSFGGNKLLNGT 141
Cdd:PRK07192   73 LNNQEGHLSGVNDQLQSIRSLLVAAGNGSLSDEDRSAMATELRSMLDSLLGLANAKDSEGNYLFSGT 139
Flagellin_IN pfam07196
Flagellin hook IN motif; The function of this region is not clear, but it is found in many ...
 194-249 3.03e-03

Flagellin hook IN motif; The function of this region is not clear, but it is found in many flagellar hook proteins, including FliD homologs. It is normally repeated, but is also apparently seen as a singleton. A conserved IN is seen at the centre of the motif. The diversity of these motifs makes it likely that some members of the family are not identified.


Pssm-ID: 399878 [Multi-domain]  Cd Length: 55  Bit Score: 35.66  E-value: 3.03e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1447645637 194 DLQITLKDTSGTDqtinISAKEGDDIEELATYIN--GQTDMVKASVD-DEGKLQVFAGS 249
Cdd:pfam07196   1 TLTINGVGGGGTD----ISVSAGDSLGDLADAINavSSKTGVSASIDtDTGRLVLTSTT 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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