NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1447671797|gb|AXN13595|]
View 

flagella basal body P-ring formation protein FlgA [Vibrio anguillarum]

Protein Classification

flagella basal body P-ring formation protein FlgA( domain architecture ID 11482531)

flagella basal body P-ring formation protein FlgA is a periplasmic protein essential for flagellar P-ring assembly

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
flgA PRK07018
flagellar basal body P-ring formation protein FlgA;
40-248 7.28e-71

flagellar basal body P-ring formation protein FlgA;


:

Pssm-ID: 180794 [Multi-domain]  Cd Length: 235  Bit Score: 216.72  E-value: 7.28e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447671797  40 SATLPQVEAIQQAAEQHVLETIEWPPSGELNVKAANVDDRIYATDCPTPlSTSSSSSNGSASNITVLVECIED-NWKIYV 118
Cdd:PRK07018   24 AATQQSPEAISEQAEQFLEQQLEAGLPGKVSVTVATLDPRLRLPACDQL-EASLPSNARLWGNVTVGVRCGGPyPWTVYV 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447671797 119 PVRLTISLPLVTVAVPISRGQQITQQDVLITMVDLHRFRRQGFSDINRIVGAKVKKNMRIGDVVEQDDIC---VVCRNEN 195
Cdd:PRK07018  103 PVRVQVTGPYVVAARPLARGEKLSASDVTLREGDLDTLPPGVFTDPDQLVGAVSKRRIAPGQPIRLNMLRqawVVCKGQT 182

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1447671797 196 VMIQAVKQGMIITTKGTALSDGIFGEQIKVKNDKSNRIIDAQVTGIGEVTVQF 248
Cdd:PRK07018  183 VSIIARGDGFSVKTEGEALNDGAVGQQIRVRNMASGQVVSGIVTGDGEVEVNL 235
 
Name Accession Description Interval E-value
flgA PRK07018
flagellar basal body P-ring formation protein FlgA;
40-248 7.28e-71

flagellar basal body P-ring formation protein FlgA;


Pssm-ID: 180794 [Multi-domain]  Cd Length: 235  Bit Score: 216.72  E-value: 7.28e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447671797  40 SATLPQVEAIQQAAEQHVLETIEWPPSGELNVKAANVDDRIYATDCPTPlSTSSSSSNGSASNITVLVECIED-NWKIYV 118
Cdd:PRK07018   24 AATQQSPEAISEQAEQFLEQQLEAGLPGKVSVTVATLDPRLRLPACDQL-EASLPSNARLWGNVTVGVRCGGPyPWTVYV 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447671797 119 PVRLTISLPLVTVAVPISRGQQITQQDVLITMVDLHRFRRQGFSDINRIVGAKVKKNMRIGDVVEQDDIC---VVCRNEN 195
Cdd:PRK07018  103 PVRVQVTGPYVVAARPLARGEKLSASDVTLREGDLDTLPPGVFTDPDQLVGAVSKRRIAPGQPIRLNMLRqawVVCKGQT 182

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1447671797 196 VMIQAVKQGMIITTKGTALSDGIFGEQIKVKNDKSNRIIDAQVTGIGEVTVQF 248
Cdd:PRK07018  183 VSIIARGDGFSVKTEGEALNDGAVGQQIRVRNMASGQVVSGIVTGDGEVEVNL 235
FlgA COG1261
Flagellar basal body P-ring formation protein FlgA [Cell motility];
102-248 7.73e-37

Flagellar basal body P-ring formation protein FlgA [Cell motility];


Pssm-ID: 440873 [Multi-domain]  Cd Length: 158  Bit Score: 127.32  E-value: 7.73e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447671797 102 NITVLVECIEDNWKIYVPVRLTISLPLVTVAVPISRGQQITQQDVLITMVDLHRFRRQGFSDINRIVGAKVKKNMRIGDV 181
Cdd:COG1261     9 RLSVGVRCDGKGWTVYVPARVAVYGEVVVAARPLARGEVITADDLRLEEGDLARLPGGALTDPDELVGKVARRSLRAGQP 88

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447671797 182 VEQDDI---CVVCRNENVMIQAVKQGMIITTKGTALSDGIFGEQIKVKNDKSNRIIDAQVTGIGEVTVQF 248
Cdd:COG1261    89 LRASDLrapPLVKRGQTVTIVARGGGFSVSAEGRALENGALGDRIRVRNLSSGKVVSGRVVGDGTVEVGL 158
ChapFlgA pfam13144
Chaperone for flagella basal body P-ring formation; ChapFlgA is a family similar to the SAF ...
 126-246 6.21e-32

Chaperone for flagella basal body P-ring formation; ChapFlgA is a family similar to the SAF family, and includes chaperones for flagellar basal-body proteins and pilus-assembly proteins, FlgA, RcpB and CpaB. ChapFlgA is necessary for the formation of the P-ring of the flagellum, FlgI, which sits in the peptidoglycan layer of the outer membrane of the bacterium. FlgA plays an auxiliary role in P-ring assembly.


Pssm-ID: 432991 [Multi-domain]  Cd Length: 122  Bit Score: 113.40  E-value: 6.21e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447671797 126 LPLVTVAVPISRGQQITQQDVLITMVDLHRFRRQGFSDinRIVGAKVKKNMRIGDVVEQDDI---CVVCRNENVMIQAVK 202
Cdd:pfam13144   1 VPVVVAARPLARGEVITASDLALKKRDLARLPGGYLTD--QAIGKRVKRSIRAGQPIRQNMLeapPLVKKGQKVTIIARG 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1447671797 203 QGMIITTKGTALSDGIFGEQIKVKNDKSNRIIDAQVTGIGEVTV 246
Cdd:pfam13144  79 GGFRITTEGKALENGAEGDQIRVKNLQSGRIVTGRVTGPGTVEV 122
flgA_cterm TIGR03170
flagella basal body P-ring formation protein FlgA; This model describes a conserved C-terminal ...
 129-246 7.73e-32

flagella basal body P-ring formation protein FlgA; This model describes a conserved C-terminal region of the flagellar basal body P-ring formation protein FlgA. This sequence region contains a SAF domain, now described by pfam08666. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274466 [Multi-domain]  Cd Length: 122  Bit Score: 113.40  E-value: 7.73e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447671797 129 VTVAVPISRGQQITQQDVLITMVDLHRFRRQGFSDINRIVGAKVKKNMRIGDVVEQDDI---CVVCRNENVMIQAVKQGM 205
Cdd:TIGR03170   2 VVAKRPLKRGEVITPEDLKLERGDLARLPGGVLTDPDEVVGKVAKRPLRAGQPLTANMLrppWLVKRGDTVTVIARGGGL 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1447671797 206 IITTKGTALSDGIFGEQIKVKNDKSNRIIDAQVTGIGEVTV 246
Cdd:TIGR03170  82 SITTEGKALEDGAVGDQIRVRNLSSGKIISGIVTAPGTVEV 122
SAF_CpaB_FlgA_like cd11614
SAF domains of the flagella basal body P-ring formation protein FlgA and the flp pilus ...
 127-187 3.34e-08

SAF domains of the flagella basal body P-ring formation protein FlgA and the flp pilus assembly CpaB; FlgA is a putative periplasmic chaperone that assists in the formation of the flagellar P ring; CpaB is a protein invoved in the assembly of the flp pili, which are bacterial virulence factors mediating non-specific adherence to surfaces; these proteins appear to contain a single SAF domain. This intermediate family also contains the SAF domains of sialic acid synthetases and type III antifreeze proteins, which also share the same extensive core structure.


Pssm-ID: 212159 [Multi-domain]  Cd Length: 61  Bit Score: 49.01  E-value: 3.34e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1447671797 127 PLVTVAVPISRGQQITQQDVLITMVDLHRFRRQGFSDINRIVGAKVKKNMRIGDVVEQDDI 187
Cdd:cd11614     1 PVVVAARDLPAGTVITADDLTLVEVPLSLLPPGALTDPDDVVGRVARRPLRAGEPITASML 61
SAF smart00858
This domain family includes a range of different proteins. Such as antifreeze proteins and ...
 129-188 2.00e-07

This domain family includes a range of different proteins. Such as antifreeze proteins and flagellar FlgA proteins, and CpaB pilus proteins;


Pssm-ID: 214862 [Multi-domain]  Cd Length: 63  Bit Score: 46.79  E-value: 2.00e-07
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447671797  129 VTVAVPISRGQQITQQDVLITMVDLHRFRRQGFSDINRIVGAKVKKNMRIGDVVEQDDIC 188
Cdd:smart00858   4 VVAARDLPAGEVITAEDLRLGHVALRDLPGGGLTPYGQVIGRVARRDIAAGEPITASNLE 63
 
Name Accession Description Interval E-value
flgA PRK07018
flagellar basal body P-ring formation protein FlgA;
40-248 7.28e-71

flagellar basal body P-ring formation protein FlgA;


Pssm-ID: 180794 [Multi-domain]  Cd Length: 235  Bit Score: 216.72  E-value: 7.28e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447671797  40 SATLPQVEAIQQAAEQHVLETIEWPPSGELNVKAANVDDRIYATDCPTPlSTSSSSSNGSASNITVLVECIED-NWKIYV 118
Cdd:PRK07018   24 AATQQSPEAISEQAEQFLEQQLEAGLPGKVSVTVATLDPRLRLPACDQL-EASLPSNARLWGNVTVGVRCGGPyPWTVYV 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447671797 119 PVRLTISLPLVTVAVPISRGQQITQQDVLITMVDLHRFRRQGFSDINRIVGAKVKKNMRIGDVVEQDDIC---VVCRNEN 195
Cdd:PRK07018  103 PVRVQVTGPYVVAARPLARGEKLSASDVTLREGDLDTLPPGVFTDPDQLVGAVSKRRIAPGQPIRLNMLRqawVVCKGQT 182

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1447671797 196 VMIQAVKQGMIITTKGTALSDGIFGEQIKVKNDKSNRIIDAQVTGIGEVTVQF 248
Cdd:PRK07018  183 VSIIARGDGFSVKTEGEALNDGAVGQQIRVRNMASGQVVSGIVTGDGEVEVNL 235
FlgA COG1261
Flagellar basal body P-ring formation protein FlgA [Cell motility];
102-248 7.73e-37

Flagellar basal body P-ring formation protein FlgA [Cell motility];


Pssm-ID: 440873 [Multi-domain]  Cd Length: 158  Bit Score: 127.32  E-value: 7.73e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447671797 102 NITVLVECIEDNWKIYVPVRLTISLPLVTVAVPISRGQQITQQDVLITMVDLHRFRRQGFSDINRIVGAKVKKNMRIGDV 181
Cdd:COG1261     9 RLSVGVRCDGKGWTVYVPARVAVYGEVVVAARPLARGEVITADDLRLEEGDLARLPGGALTDPDELVGKVARRSLRAGQP 88

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447671797 182 VEQDDI---CVVCRNENVMIQAVKQGMIITTKGTALSDGIFGEQIKVKNDKSNRIIDAQVTGIGEVTVQF 248
Cdd:COG1261    89 LRASDLrapPLVKRGQTVTIVARGGGFSVSAEGRALENGALGDRIRVRNLSSGKVVSGRVVGDGTVEVGL 158
ChapFlgA pfam13144
Chaperone for flagella basal body P-ring formation; ChapFlgA is a family similar to the SAF ...
 126-246 6.21e-32

Chaperone for flagella basal body P-ring formation; ChapFlgA is a family similar to the SAF family, and includes chaperones for flagellar basal-body proteins and pilus-assembly proteins, FlgA, RcpB and CpaB. ChapFlgA is necessary for the formation of the P-ring of the flagellum, FlgI, which sits in the peptidoglycan layer of the outer membrane of the bacterium. FlgA plays an auxiliary role in P-ring assembly.


Pssm-ID: 432991 [Multi-domain]  Cd Length: 122  Bit Score: 113.40  E-value: 6.21e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447671797 126 LPLVTVAVPISRGQQITQQDVLITMVDLHRFRRQGFSDinRIVGAKVKKNMRIGDVVEQDDI---CVVCRNENVMIQAVK 202
Cdd:pfam13144   1 VPVVVAARPLARGEVITASDLALKKRDLARLPGGYLTD--QAIGKRVKRSIRAGQPIRQNMLeapPLVKKGQKVTIIARG 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1447671797 203 QGMIITTKGTALSDGIFGEQIKVKNDKSNRIIDAQVTGIGEVTV 246
Cdd:pfam13144  79 GGFRITTEGKALENGAEGDQIRVKNLQSGRIVTGRVTGPGTVEV 122
flgA_cterm TIGR03170
flagella basal body P-ring formation protein FlgA; This model describes a conserved C-terminal ...
 129-246 7.73e-32

flagella basal body P-ring formation protein FlgA; This model describes a conserved C-terminal region of the flagellar basal body P-ring formation protein FlgA. This sequence region contains a SAF domain, now described by pfam08666. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274466 [Multi-domain]  Cd Length: 122  Bit Score: 113.40  E-value: 7.73e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447671797 129 VTVAVPISRGQQITQQDVLITMVDLHRFRRQGFSDINRIVGAKVKKNMRIGDVVEQDDI---CVVCRNENVMIQAVKQGM 205
Cdd:TIGR03170   2 VVAKRPLKRGEVITPEDLKLERGDLARLPGGVLTDPDEVVGKVAKRPLRAGQPLTANMLrppWLVKRGDTVTVIARGGGL 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1447671797 206 IITTKGTALSDGIFGEQIKVKNDKSNRIIDAQVTGIGEVTV 246
Cdd:TIGR03170  82 SITTEGKALEDGAVGDQIRVRNLSSGKIISGIVTAPGTVEV 122
flgA PRK06804
flagellar basal body P-ring formation protein FlgA;
114-248 5.40e-21

flagellar basal body P-ring formation protein FlgA;


Pssm-ID: 235863 [Multi-domain]  Cd Length: 261  Bit Score: 88.78  E-value: 5.40e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447671797 114 WKIYVPVRLTISLPLVTVAVPISRGQQITQQDVLITMVDLHRFRRQGFSDINRIVGAKVKKNMRIGDVVEQDDI---CVV 190
Cdd:PRK06804  124 WEVVVTVKPDIYLPVWVAKQTLERGRKVQADDIELKKKNISGVQGGYITDPDEAIGLTIKRRIRQLQAVIPSQLeqpVLV 203

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1447671797 191 CRNENVMIQAVKQGMIITTKGTALSDGIFGEQIKVKNDKSNRIIDAQVTGIGEVTVQF 248
Cdd:PRK06804  204 ERGQHVLMIAAQDGIEAQTLGIAQKNGRKGELIKVKNLSSGRVVTATVDGSGRVRMLG 261
flgA PRK12786
flagellar basal body P-ring formation protein FlgA;
119-247 5.89e-16

flagellar basal body P-ring formation protein FlgA;


Pssm-ID: 237201 [Multi-domain]  Cd Length: 338  Bit Score: 75.85  E-value: 5.89e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447671797 119 PVRLTIS------LPLVTVAVPISRGQQITQQDVLITMVDLHRFRRQGFSDINRIVGAKVKKNMRIGDVVEQDDIC---V 189
Cdd:PRK12786  179 PVRLRVTgtayetVEAPVLARAVGRGEVIKSSDVVWERRPKARVSGDDIASREDLVGMQARRALRAGQPLRGADLAkpdL 258

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1447671797 190 VCRNENVMIQAVKQGMIITTKGTALSDGIFGEQIKVKNDKSNRIIDAQVTGIGEVTVQ 247
Cdd:PRK12786  259 VQRGQLVTLIYQTPGIYLTARGKALEDGAEGDVVRVLNLQSKRTVTGTVTGRGQVSVD 316
flgA PRK12617
flagellar basal body P-ring formation protein FlgA;
46-246 4.71e-13

flagellar basal body P-ring formation protein FlgA;


Pssm-ID: 183625 [Multi-domain]  Cd Length: 214  Bit Score: 66.09  E-value: 4.71e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447671797  46 VEAIQQAAeqhvLETIEWPPSGElnvkaANVDDRIYATDCPTPLSTSSSSsngsasNITVLVECIED-NWKIYVPVRLTI 124
Cdd:PRK12617   23 VDSIRAAA----LATVGPDAEAE-----ATLDPGLRMPACPIALQAQPTG------TNTVEVACPQPaGWRLFVPLKVRR 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447671797 125 SLPLVTVAVPISRGQQITQQDVLITMVDLHRFRRQGFSDINRIVGAKVKKNMRIGDVVEQDDICV---VCRNENVMIQAV 201
Cdd:PRK12617   88 NQDVLVLRRGITAGETISLADISIEKRDAARIVGAVLADPVAAVGKTARRILPAGSLLSANDLVSqrlVRRGDTVPLVSR 167

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1447671797 202 KQGMIITTKGTALSDGIFGEQIKVKNDKSNRIIDAQVTGIGEVTV 246
Cdd:PRK12617  168 NGGLEVRMSGRALSDAGENERVSVENSSSRRVVQGIVEASGTVVV 212
ChapFlgA_N pfam17656
FlgA N-terminal domain; Presumed domain found to N-terminus of SAF-like domain in FlgA ...
 49-124 3.23e-09

FlgA N-terminal domain; Presumed domain found to N-terminus of SAF-like domain in FlgA proteins.


Pssm-ID: 435950  Cd Length: 76  Bit Score: 52.36  E-value: 3.23e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1447671797  49 IQQAAEQHVLETIEWPPsGELNVKAANVDDRIYATDCPTPLSTSSSSSNGSASNITVLVECIEDN-WKIYVPVRLTI 124
Cdd:pfam17656   1 IEAAVEDFLQQQGAGLG-GKVEIKVGNLDPRLRLPACDGALEVELPSGSDPWGRFTVKVRCNGPApWTLYVPVRVEV 76
flgA PRK12618
flagellar basal body P-ring formation protein FlgA;
121-247 4.41e-09

flagellar basal body P-ring formation protein FlgA;


Pssm-ID: 183626 [Multi-domain]  Cd Length: 141  Bit Score: 53.55  E-value: 4.41e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447671797 121 RLTISLPLVTVAVPIS----------RGQQ-ITQQDVLITMVDLhrfrRQGFSDINRIVGAKVKKNMRIGDVVEQDDI-- 187
Cdd:PRK12618    3 RLVLLLLLLLLAQPAAaetvvaartiRALTvIGAEDLALKPGDT----PGALTDPAQAIGQEARVTLYAGRPIRAADLgp 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1447671797 188 -CVVCRNENVMIQAVKQGMIITTKGTALSDGIFGEQIKVKNDKSNRIIDAQVTGIGEVTVQ 247
Cdd:PRK12618   79 pAIVDRNQLVPLAYRLGGLEIRTEGRALSRGGVGDEIRVMNLSSRTTVSGRIAADGSVIVG 139
flgA PRK08515
flagellar basal body P-ring formation protein FlgA;
111-247 1.51e-08

flagellar basal body P-ring formation protein FlgA;


Pssm-ID: 236280 [Multi-domain]  Cd Length: 222  Bit Score: 53.47  E-value: 1.51e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447671797 111 EDNWKIYVPVRLTISLPLVTVAVPISRGQQITQQDVLITMVDLHRFRRQGF--SDINRIVgakVKKNMRIGDVVEQDDI- 187
Cdd:PRK08515   85 NPNKKLFFRYSIIANLEVLKSIRAIKKDDNLTANNTKKKRIPFGKLPKNPLleDDIDNLS---AKSFIPPGTILTADKFk 161

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1447671797 188 --CVVCRNENvmIQAVKQ--GMIITTKGTALSDGIFGEQIKVKNdKSNRIIDAQVTGIGEVTVQ 247
Cdd:PRK08515  162 alILVRKNDI--INGVLKegGVSIEISLKALQDGNLGDIIQAKN-KSNKILKAKVLSKNKAEIL 222
SAF_CpaB_FlgA_like cd11614
SAF domains of the flagella basal body P-ring formation protein FlgA and the flp pilus ...
 127-187 3.34e-08

SAF domains of the flagella basal body P-ring formation protein FlgA and the flp pilus assembly CpaB; FlgA is a putative periplasmic chaperone that assists in the formation of the flagellar P ring; CpaB is a protein invoved in the assembly of the flp pili, which are bacterial virulence factors mediating non-specific adherence to surfaces; these proteins appear to contain a single SAF domain. This intermediate family also contains the SAF domains of sialic acid synthetases and type III antifreeze proteins, which also share the same extensive core structure.


Pssm-ID: 212159 [Multi-domain]  Cd Length: 61  Bit Score: 49.01  E-value: 3.34e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1447671797 127 PLVTVAVPISRGQQITQQDVLITMVDLHRFRRQGFSDINRIVGAKVKKNMRIGDVVEQDDI 187
Cdd:cd11614     1 PVVVAARDLPAGTVITADDLTLVEVPLSLLPPGALTDPDDVVGRVARRPLRAGEPITASML 61
SAF smart00858
This domain family includes a range of different proteins. Such as antifreeze proteins and ...
 129-188 2.00e-07

This domain family includes a range of different proteins. Such as antifreeze proteins and flagellar FlgA proteins, and CpaB pilus proteins;


Pssm-ID: 214862 [Multi-domain]  Cd Length: 63  Bit Score: 46.79  E-value: 2.00e-07
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447671797  129 VTVAVPISRGQQITQQDVLITMVDLHRFRRQGFSDINRIVGAKVKKNMRIGDVVEQDDIC 188
Cdd:smart00858   4 VVAARDLPAGEVITAEDLRLGHVALRDLPGGGLTPYGQVIGRVARRDIAAGEPITASNLE 63
flgA PRK06005
flagellar basal body P-ring formation protein FlgA;
204-247 3.47e-03

flagellar basal body P-ring formation protein FlgA;


Pssm-ID: 180347 [Multi-domain]  Cd Length: 160  Bit Score: 36.97  E-value: 3.47e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1447671797 204 GMIITTKGTALSDGIFGEQIKVKNDKSNRIIDAQVTGIGEVTVQ 247
Cdd:PRK06005  115 GLTITAAGTPLQSGAAGDLIRVRNVDSGVIVSGTVLADGTIQVG 158
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH