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Conserved domains on  [gi|1487553060|gb|AYG21270|]
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50S ribosomal protein L31 [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

50S ribosomal protein L31( domain architecture ID 10011073)

50S ribosomal protein L31 binds the 23S rRNA in a Zn(II)-dependent manner

Gene Symbol:  rpmE
Gene Ontology:  GO:0006412|GO:0003735|GO:0046872|GO:0019843
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpmE PRK00019
50S ribosomal protein L31; Reviewed
 1-70 8.38e-43

50S ribosomal protein L31; Reviewed


:

Pssm-ID: 234576  Cd Length: 72  Bit Score: 132.74  E-value: 8.38e-43
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1487553060  1 MKKDIHPKYEEITASCSCGNVMKIRSTVGHD-LNLDVCSKCHPFFTGKQRDVATGGRVDRFNKRFNIPGSK 70
Cdd:PRK00019   1 MKKDIHPKYEEVTVTCSCGNVFETRSTLGKDeINVDVCSKCHPFYTGKQKIVDTGGRVERFNKRFGKKGKK 71
 
Name Accession Description Interval E-value
rpmE PRK00019
50S ribosomal protein L31; Reviewed
 1-70 8.38e-43

50S ribosomal protein L31; Reviewed


Pssm-ID: 234576  Cd Length: 72  Bit Score: 132.74  E-value: 8.38e-43
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1487553060  1 MKKDIHPKYEEITASCSCGNVMKIRSTVGHD-LNLDVCSKCHPFFTGKQRDVATGGRVDRFNKRFNIPGSK 70
Cdd:PRK00019   1 MKKDIHPKYEEVTVTCSCGNVFETRSTLGKDeINVDVCSKCHPFYTGKQKIVDTGGRVERFNKRFGKKGKK 71
RpmE COG0254
Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31 ...
 1-70 1.92e-39

Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440024  Cd Length: 72  Bit Score: 124.10  E-value: 1.92e-39
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1487553060  1 MKKDIHPKYEEITASCSCGNVMKIRSTV-GHDLNLDVCSKCHPFFTGKQRDVATGGRVDRFNKRFNIPGSK 70
Cdd:COG0254    1 MKKGIHPEYREVVVTCSCGNEFLTRSTLeYPEIKVDVCSACHPFYTGKQKIVDTAGRVEKFNKRYGKFGKK 71
Ribosomal_L31 pfam01197
Ribosomal protein L31;
1-65 1.05e-38

Ribosomal protein L31;


Pssm-ID: 460107  Cd Length: 65  Bit Score: 122.14  E-value: 1.05e-38
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1487553060  1 MKKDIHPKYEEITASCSCGNVMKIRSTVGHDLNLDVCSKCHPFFTGKQRDVATGGRVDRFNKRFN 65
Cdd:pfam01197  1 MKKGIHPEYREVTVTCTCGNTFLTRSTEYPEIKVDVCSACHPFYTGKQKLVDTAGRVEKFNKRYG 65
L31 TIGR00105
ribosomal protein L31; This family consists exclusively of bacterial (and organellar) 50S ...
 1-67 6.12e-37

ribosomal protein L31; This family consists exclusively of bacterial (and organellar) 50S ribosomal protein L31. In some species, such as Bacillus subtilis, this protein exists in two forms (RpmE and YtiA), one of which (RpmE) contains a pair of motifs, CXC and CXXC, for binding zinc. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272907  Cd Length: 68  Bit Score: 117.77  E-value: 6.12e-37
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1487553060  1 MKKDIHPKYEEITASCSCGNVMKIRSTVGH-DLNLDVCSKCHPFFTGKQRDVATGGRVDRFNKRFNIP 67
Cdd:TIGR00105  1 MKKDIHPDYHEITVTCTCGNVFTTRSTWGKeTLNLDICSKCHPFYTGKQKIVDTGGRVDKFNKKFGGL 68
At5g55125 cd23697
Arabidopsis thaliana mitochondrial ribosomal protein L31, and similar proteins; Mitochondrial ...
 1-67 1.70e-03

Arabidopsis thaliana mitochondrial ribosomal protein L31, and similar proteins; Mitochondrial ribosomal protein L31, also called bL31m or At5g55125, is a component of the large subunit (LSU) in RNA-rich Arabidopsis thaliana mitochondrial ribosome (mitoribosome).


Pssm-ID: 467911  Cd Length: 65  Bit Score: 33.19  E-value: 1.70e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1487553060  1 MKKDIHPKYEEITASCSCGNVMKIRSTVGHDLNldvcskcHPFFTGKQRDVATG-GRVDRFNKRFNIP 67
Cdd:cd23697    1 MKKGLHPQLQWISYVTQSGRLMHVMMAKIHHVG-------RVYHVRAKRQMAQSiGQIAKFKRRYGMQ 61
 
Name Accession Description Interval E-value
rpmE PRK00019
50S ribosomal protein L31; Reviewed
 1-70 8.38e-43

50S ribosomal protein L31; Reviewed


Pssm-ID: 234576  Cd Length: 72  Bit Score: 132.74  E-value: 8.38e-43
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1487553060  1 MKKDIHPKYEEITASCSCGNVMKIRSTVGHD-LNLDVCSKCHPFFTGKQRDVATGGRVDRFNKRFNIPGSK 70
Cdd:PRK00019   1 MKKDIHPKYEEVTVTCSCGNVFETRSTLGKDeINVDVCSKCHPFYTGKQKIVDTGGRVERFNKRFGKKGKK 71
RpmE COG0254
Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31 ...
 1-70 1.92e-39

Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440024  Cd Length: 72  Bit Score: 124.10  E-value: 1.92e-39
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1487553060  1 MKKDIHPKYEEITASCSCGNVMKIRSTV-GHDLNLDVCSKCHPFFTGKQRDVATGGRVDRFNKRFNIPGSK 70
Cdd:COG0254    1 MKKGIHPEYREVVVTCSCGNEFLTRSTLeYPEIKVDVCSACHPFYTGKQKIVDTAGRVEKFNKRYGKFGKK 71
Ribosomal_L31 pfam01197
Ribosomal protein L31;
1-65 1.05e-38

Ribosomal protein L31;


Pssm-ID: 460107  Cd Length: 65  Bit Score: 122.14  E-value: 1.05e-38
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1487553060  1 MKKDIHPKYEEITASCSCGNVMKIRSTVGHDLNLDVCSKCHPFFTGKQRDVATGGRVDRFNKRFN 65
Cdd:pfam01197  1 MKKGIHPEYREVTVTCTCGNTFLTRSTEYPEIKVDVCSACHPFYTGKQKLVDTAGRVEKFNKRYG 65
L31 TIGR00105
ribosomal protein L31; This family consists exclusively of bacterial (and organellar) 50S ...
 1-67 6.12e-37

ribosomal protein L31; This family consists exclusively of bacterial (and organellar) 50S ribosomal protein L31. In some species, such as Bacillus subtilis, this protein exists in two forms (RpmE and YtiA), one of which (RpmE) contains a pair of motifs, CXC and CXXC, for binding zinc. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272907  Cd Length: 68  Bit Score: 117.77  E-value: 6.12e-37
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1487553060  1 MKKDIHPKYEEITASCSCGNVMKIRSTVGH-DLNLDVCSKCHPFFTGKQRDVATGGRVDRFNKRFNIP 67
Cdd:TIGR00105  1 MKKDIHPDYHEITVTCTCGNVFTTRSTWGKeTLNLDICSKCHPFYTGKQKIVDTGGRVDKFNKKFGGL 68
rpmE PRK00528
50S ribosomal protein L31; Reviewed
 1-65 2.82e-22

50S ribosomal protein L31; Reviewed


Pssm-ID: 179057  Cd Length: 71  Bit Score: 80.77  E-value: 2.82e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1487553060  1 MKKDIHPKYEEITASCSCGNVMKIRSTVGHD---LNLDVCSKCHPFFT-GKQRDVATGGRVDRFNKRFN 65
Cdd:PRK00528   1 MKKDIHPDYHPIKVVMTDGTEYETRSTWGKTgpeLRLDIDSGNHPAWTgGTQKLLDTGGRVAKFNKKFG 69
rpmE2 PRK01678
type B 50S ribosomal protein L31;
1-70 1.65e-19

type B 50S ribosomal protein L31;


Pssm-ID: 234969  Cd Length: 87  Bit Score: 74.15  E-value: 1.65e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1487553060  1 MKKDIHPKYEEI----TAScscGNVMKIRSTVGHD-------------LNLDVCSKCHPFFTGKQRDVATGGRVDRFNKR 63
Cdd:PRK01678   1 MKKGIHPEYRPVvfhdTST---GFKFLTGSTITTDetiewedgktyplVKVEISSASHPFYTGKQKFVDTEGRVEKFNKR 77


                 ....*..
gi 1487553060 64 FNIPGSK 70
Cdd:PRK01678  78 FGRFASK 84
rpl31 CHL00136
ribosomal protein L31; Validated
 1-66 2.76e-15

ribosomal protein L31; Validated


Pssm-ID: 177058  Cd Length: 68  Bit Score: 63.13  E-value: 2.76e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1487553060  1 MKKDIHPK-YEEITASCSCGNVMKIRSTvGHDLNLDVCSKCHPFFTGKQRDVATGGRVDRFNKRFNI 66
Cdd:CHL00136   2 PKKNIHPQwFPETKVYCDGQLVMTVGST-KPELNVDIWSGNHPFYTGSQKIIDTEGRVERFMKKYGL 67
PRK01397 PRK01397
50S ribosomal protein L31; Provisional
 1-64 2.12e-05

50S ribosomal protein L31; Provisional


Pssm-ID: 179294  Cd Length: 78  Bit Score: 38.40  E-value: 2.12e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1487553060  1 MKKDIHPKYEEITASCScGNVMKIRSTV-GHDLNLDVCSKCHPFFTGKQRDV--ATGGRVDRFNKRF 64
Cdd:PRK01397   1 MKSGIHPEYKKFLIKVG-SDVFETMSTHpTGEILMDVDFRKHPAWNKDSGNVvnQSNKSVSDFNKRF 66
At5g55125 cd23697
Arabidopsis thaliana mitochondrial ribosomal protein L31, and similar proteins; Mitochondrial ...
 1-67 1.70e-03

Arabidopsis thaliana mitochondrial ribosomal protein L31, and similar proteins; Mitochondrial ribosomal protein L31, also called bL31m or At5g55125, is a component of the large subunit (LSU) in RNA-rich Arabidopsis thaliana mitochondrial ribosome (mitoribosome).


Pssm-ID: 467911  Cd Length: 65  Bit Score: 33.19  E-value: 1.70e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1487553060  1 MKKDIHPKYEEITASCSCGNVMKIRSTVGHDLNldvcskcHPFFTGKQRDVATG-GRVDRFNKRFNIP 67
Cdd:cd23697    1 MKKGLHPQLQWISYVTQSGRLMHVMMAKIHHVG-------RVYHVRAKRQMAQSiGQIAKFKRRYGMQ 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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