|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
22-333 |
2.63e-153 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 439.21 E-value: 2.63e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 22 VFEDPKSQALLDHIQQVAPSEASVLIIGETGTGKELVARHIHNLSARRNRPFVAVNCGAFSESLVEAELFGHEKGAFTGA 101
Cdd:COG3829 141 IGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTGA 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 102 LSA-KAGWFEEADGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPINVRVLAATNVQLEKAINAGHFREDLYY 180
Cdd:COG3829 221 KKGgKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYY 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 181 RLDVVSLELSPLRERPGDILPLTRHFIEAYSQRLGYGPITISREAEQKLRSYSWPGNIRELENVIHHTLLICRNSVIERD 260
Cdd:COG3829 301 RLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNIKGISPEALELLLAYDWPGNVRELENVIERAVVLSEGDVITPE 380
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1524489508 261 DLRlSNLRIERQDDSQHGTDNSAEALlarafqklfeeqagalhEKVEDALLRAAYRFSHYNQVHTASLLGLSR 333
Cdd:COG3829 381 HLP-EYLLEEAEAASAAEEGSLKEAL-----------------EEVEKELIEEALEKTGGNKSKAAKALGISR 435
|
|
| TF_PrdR |
NF041552 |
sigma-54 dependent transcriptional regulator PrdR; |
27-340 |
6.86e-110 |
|
sigma-54 dependent transcriptional regulator PrdR;
Pssm-ID: 469437 [Multi-domain] Cd Length: 577 Bit Score: 332.63 E-value: 6.86e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 27 KSQALLDHI---QQVAPSEASVLIIGETGTGKELVARHIHNLSARRNrPFVAVNCGAFSESLVEAELFGHEKGAFTGALS 103
Cdd:NF041552 272 KSKKIIKKIeiaKQVAKTNSSVLITGESGTGKEVFARAIHQASGRKG-PFVPVNCSAIPEELFESEFFGYEEGAFTGALK 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 104 -AKAGWFEEADGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPINVRVLAATNVQLEKAINAGHFREDLYYRL 182
Cdd:NF041552 351 kGKIGKFELANNGTLFLDEIGDMPLSMQAKLLRVLQEKQVRRVGGEKYIKINVRIISATNKDLKKMVKEGKFREDLYYRL 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 183 DVVSLELSPLRERPGDILPLTRHFIEAYSQRLGYGPITISREAEQKLRSYSWPGNIRELENVIHHTLLICRNSVIERDDL 262
Cdd:NF041552 431 NVVEIELPPLRERKEDIPLLINYFLKEICKENNKEIPKIDKEVYDILQNYKWKGNIRELKNTIEHLVVLSKNGTITKDSI 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 263 rlsnlrierqddsqhgtdnsAEALLARAFQKLFEEQAGALH-----EKVEDALLRAAYRFSHYNQVHTASLLglsrNVTR 337
Cdd:NF041552 511 --------------------PEYILESVKKKEDEEGDYPLDlnkavEKLEIDTIKKALEMSNGNKAKAAKLL----NIPR 566
|
...
gi 1524489508 338 TRL 340
Cdd:NF041552 567 STL 569
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
22-188 |
2.50e-106 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 308.95 E-value: 2.50e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 22 VFEDPKSQALLDHIQQVAPSEASVLIIGETGTGKELVARHIHNLSARRNRPFVAVNCGAFSESLVEAELFGHEKGAFTGA 101
Cdd:pfam00158 2 IGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTGA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 102 LSAKAGWFEEADGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPINVRVLAATNVQLEKAINAGHFREDLYYR 181
Cdd:pfam00158 82 DSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYYR 161
|
....*..
gi 1524489508 182 LDVVSLE 188
Cdd:pfam00158 162 LNVIPIE 168
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
29-246 |
6.80e-104 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 315.19 E-value: 6.80e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 29 QALLDHIQQVAPSEASVLIIGETGTGKELVARHIHNLSARRNRPFVAVNCGAFSESLVEAELFGHEKGAFTGALSAKAGW 108
Cdd:PRK05022 197 QQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGK 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 109 FEEADGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPINVRVLAATNVQLEKAINAGHFREDLYYRLDVVSLE 188
Cdd:PRK05022 277 FELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLS 356
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1524489508 189 LSPLRERPGDILPLTRHFIEAYSQRLGYGPITISREAEQKLRSYSWPGNIRELENVIH 246
Cdd:PRK05022 357 VPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVIS 414
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
8-266 |
9.00e-102 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 310.49 E-value: 9.00e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 8 PSPALATSIRATAQVFEDPKSQALLDHIQQVAPSEASVLIIGETGTGKELVARHIHNLSARRNRPFVAVNCGAFSESLVE 87
Cdd:TIGR01817 185 PEIARRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 88 AELFGHEKGAFTGALSAKAGWFEEADGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPINVRVLAATNVQLEK 167
Cdd:TIGR01817 265 SELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 168 AINAGHFREDLYYRLDVVSLELSPLRERPGDILPLTRHFIEAYSQRLGYgPITISREAEQKLRSYSWPGNIRELENVIHH 247
Cdd:TIGR01817 345 AVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGR-PLTITPSAIRVLMSCKWPGNVRELENCLER 423
|
250
....*....|....*....
gi 1524489508 248 TLLICRNSVIERDDLRLSN 266
Cdd:TIGR01817 424 TATLSRSGTITRSDFSCQS 442
|
|
| RNA_repair_RtcR |
NF038308 |
RNA repair transcriptional activator RtcR; |
29-333 |
1.20e-96 |
|
RNA repair transcriptional activator RtcR;
Pssm-ID: 468466 [Multi-domain] Cd Length: 527 Bit Score: 297.17 E-value: 1.20e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 29 QALLDHIQQVAP-SEASVLIIGETGTGKELVARHIHNLSARRNR---PFVAVNCGAFSESLVEAELFGHEKGAFTGALSA 104
Cdd:NF038308 189 NRLIEQIERVALrSRAPILLTGPTGAGKSFLARRIYELKKRRHQvsgPFVEVNCATLRGDLAMSELFGHVKGAFTGAQAD 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 105 KAGWFEEADGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPINVRVLAATNVQLEKAINAGHFREDLYYRLDV 184
Cdd:NF038308 269 RAGLLRAADGGTLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLYARINL 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 185 VSLELSPLRERPGDILPLTRHFIEAYSQRLGYgPITISREAEQK------LRSYSWPGNIRELENVIHHTLLICRNSVIE 258
Cdd:NF038308 349 WTFRLPGLRERREDIEPNLDYELDRFARELGR-QVRFNKEARFRylafatSPEALWPGNFRELSASVTRMATLADGGRIT 427
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1524489508 259 RDDLRLSNLRIERQDdsQHGTDNSAEALLARAfqkLFEEQAGALH--EKVEDALLRAAYRFSHYNQVHTASLLGLSR 333
Cdd:NF038308 428 EELVEEEIARLRAAW--QSAPAAADDDALADL---LGGEQLAELDlfDRVQLAAVLRVCRQSRSLSAAGRRLFGVSR 499
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
40-185 |
5.19e-24 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 96.45 E-value: 5.19e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 40 PSEASVLIIGETGTGKELVARHIHNLSARRNRPFVAVNCGAFSESLVEAELFGHEKGAFTGALsakagwFEEADGGTLFL 119
Cdd:cd00009 17 PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFEL------AEKAKPGVLFI 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1524489508 120 DEIGDLPMAIQVKLLRVLQEREVVRLGSRksipiNVRVLAATNvqlekAINAGHFREDLYYRLDVV 185
Cdd:cd00009 91 DEIDSLSRGAQNALLRVLETLNDLRIDRE-----NVRVIGATN-----RPLLGDLDRALYDRLDIR 146
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
44-182 |
1.32e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 58.92 E-value: 1.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 44 SVLIIGETGTGKELVARHIHNLSARRNRPFVAVNCGAFSESLVEA---ELFGHEKGAFTGALSAKaGWFEEA---DGGTL 117
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQlllIIVGGKKASGSGELRLR-LALALArklKPDVL 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1524489508 118 FLDEIGDLPMAIQVKLLRVLQErevVRLGSRKSIPINVRVLAATN--VQLEKAINAGHFREDLYYRL 182
Cdd:smart00382 83 ILDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNdeKDLGPALLRRRFDRRIVLLL 146
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
22-333 |
2.63e-153 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 439.21 E-value: 2.63e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 22 VFEDPKSQALLDHIQQVAPSEASVLIIGETGTGKELVARHIHNLSARRNRPFVAVNCGAFSESLVEAELFGHEKGAFTGA 101
Cdd:COG3829 141 IGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTGA 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 102 LSA-KAGWFEEADGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPINVRVLAATNVQLEKAINAGHFREDLYY 180
Cdd:COG3829 221 KKGgKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYY 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 181 RLDVVSLELSPLRERPGDILPLTRHFIEAYSQRLGYGPITISREAEQKLRSYSWPGNIRELENVIHHTLLICRNSVIERD 260
Cdd:COG3829 301 RLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNIKGISPEALELLLAYDWPGNVRELENVIERAVVLSEGDVITPE 380
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1524489508 261 DLRlSNLRIERQDDSQHGTDNSAEALlarafqklfeeqagalhEKVEDALLRAAYRFSHYNQVHTASLLGLSR 333
Cdd:COG3829 381 HLP-EYLLEEAEAASAAEEGSLKEAL-----------------EEVEKELIEEALEKTGGNKSKAAKALGISR 435
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
22-344 |
4.38e-129 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 376.23 E-value: 4.38e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 22 VFEDPKSQALLDHIQQVAPSEASVLIIGETGTGKELVARHIHNLSARRNRPFVAVNCGAFSESLVEAELFGHEKGAFTGA 101
Cdd:COG2204 134 IGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTGA 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 102 LSAKAGWFEEADGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPINVRVLAATNVQLEKAINAGHFREDLYYR 181
Cdd:COG2204 214 VARRIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKPIPVDVRVIAATNRDLEELVEEGRFREDLYYR 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 182 LDVVSLELSPLRERPGDILPLTRHFIEAYSQRLGyGPITISREAEQKLRSYSWPGNIRELENVIHHTLLICRNSVIERDD 261
Cdd:COG2204 294 LNVFPIELPPLRERREDIPLLARHFLARFAAELG-KPVKLSPEALEALLAYDWPGNVRELENVIERAVILADGEVITAED 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 262 LRLSNLRIERQddsqhgtdnsaeallarafqklfeeqagalhekvedaLLRAAYRFSHYNQVHTASLLGLSRNVTRTRLI 341
Cdd:COG2204 373 LPEALEEVERE-------------------------------------LIERALEETGGNVSRAAELLGISRRTLYRKLK 415
|
...
gi 1524489508 342 KIG 344
Cdd:COG2204 416 KYG 418
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
5-334 |
6.51e-112 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 339.18 E-value: 6.51e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 5 TLPPSPALATSIRATAQ-VFEDPKSQALLDHIQQVAPSEASVLIIGETGTGKELVARHIHNLSARRNRPFVAVNCGAFSE 83
Cdd:COG3284 306 AARAAPAGAPAPAALAAlAGGDPAMRRALRRARRLADRDIPVLILGETGTGKELFARAIHAASPRADGPFVAVNCAAIPE 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 84 SLVEAELFGHEKGAFTGALS-AKAGWFEEADGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPINVRVLAATN 162
Cdd:COG3284 386 ELIESELFGYEPGAFTGARRkGRPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTKPIPVDVRLIAATH 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 163 VQLEKAINAGHFREDLYYRLDVVSLELSPLRERpGDILPLTRHFIEAYSQRlgYGPITISREAEQKLRSYSWPGNIRELE 242
Cdd:COG3284 466 RDLRELVAAGRFREDLYYRLNGLTLTLPPLRER-EDLPALIEHLLRELAAG--RGPLRLSPEALALLAAYPWPGNVRELR 542
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 243 NVIHHTLLICRNSVIERDDLrlsnlrierqddsqhgtdnSAEALLARAFQKLFEEQAGALHEKVEDALLRAAYRFSHYNQ 322
Cdd:COG3284 543 NVLRTALALADGGVITVEDL-------------------PDELRAELAAAAPAAAAPLTSLEEAERDAILRALRACGGNV 603
|
330
....*....|..
gi 1524489508 323 VHTASLLGLSRN 334
Cdd:COG3284 604 SAAARALGISRS 615
|
|
| TF_PrdR |
NF041552 |
sigma-54 dependent transcriptional regulator PrdR; |
27-340 |
6.86e-110 |
|
sigma-54 dependent transcriptional regulator PrdR;
Pssm-ID: 469437 [Multi-domain] Cd Length: 577 Bit Score: 332.63 E-value: 6.86e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 27 KSQALLDHI---QQVAPSEASVLIIGETGTGKELVARHIHNLSARRNrPFVAVNCGAFSESLVEAELFGHEKGAFTGALS 103
Cdd:NF041552 272 KSKKIIKKIeiaKQVAKTNSSVLITGESGTGKEVFARAIHQASGRKG-PFVPVNCSAIPEELFESEFFGYEEGAFTGALK 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 104 -AKAGWFEEADGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPINVRVLAATNVQLEKAINAGHFREDLYYRL 182
Cdd:NF041552 351 kGKIGKFELANNGTLFLDEIGDMPLSMQAKLLRVLQEKQVRRVGGEKYIKINVRIISATNKDLKKMVKEGKFREDLYYRL 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 183 DVVSLELSPLRERPGDILPLTRHFIEAYSQRLGYGPITISREAEQKLRSYSWPGNIRELENVIHHTLLICRNSVIERDDL 262
Cdd:NF041552 431 NVVEIELPPLRERKEDIPLLINYFLKEICKENNKEIPKIDKEVYDILQNYKWKGNIRELKNTIEHLVVLSKNGTITKDSI 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 263 rlsnlrierqddsqhgtdnsAEALLARAFQKLFEEQAGALH-----EKVEDALLRAAYRFSHYNQVHTASLLglsrNVTR 337
Cdd:NF041552 511 --------------------PEYILESVKKKEDEEGDYPLDlnkavEKLEIDTIKKALEMSNGNKAKAAKLL----NIPR 566
|
...
gi 1524489508 338 TRL 340
Cdd:NF041552 567 STL 569
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
22-188 |
2.50e-106 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 308.95 E-value: 2.50e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 22 VFEDPKSQALLDHIQQVAPSEASVLIIGETGTGKELVARHIHNLSARRNRPFVAVNCGAFSESLVEAELFGHEKGAFTGA 101
Cdd:pfam00158 2 IGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTGA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 102 LSAKAGWFEEADGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPINVRVLAATNVQLEKAINAGHFREDLYYR 181
Cdd:pfam00158 82 DSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYYR 161
|
....*..
gi 1524489508 182 LDVVSLE 188
Cdd:pfam00158 162 LNVIPIE 168
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
29-246 |
6.80e-104 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 315.19 E-value: 6.80e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 29 QALLDHIQQVAPSEASVLIIGETGTGKELVARHIHNLSARRNRPFVAVNCGAFSESLVEAELFGHEKGAFTGALSAKAGW 108
Cdd:PRK05022 197 QQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGK 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 109 FEEADGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPINVRVLAATNVQLEKAINAGHFREDLYYRLDVVSLE 188
Cdd:PRK05022 277 FELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLS 356
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1524489508 189 LSPLRERPGDILPLTRHFIEAYSQRLGYGPITISREAEQKLRSYSWPGNIRELENVIH 246
Cdd:PRK05022 357 VPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVIS 414
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
8-266 |
9.00e-102 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 310.49 E-value: 9.00e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 8 PSPALATSIRATAQVFEDPKSQALLDHIQQVAPSEASVLIIGETGTGKELVARHIHNLSARRNRPFVAVNCGAFSESLVE 87
Cdd:TIGR01817 185 PEIARRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 88 AELFGHEKGAFTGALSAKAGWFEEADGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPINVRVLAATNVQLEK 167
Cdd:TIGR01817 265 SELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 168 AINAGHFREDLYYRLDVVSLELSPLRERPGDILPLTRHFIEAYSQRLGYgPITISREAEQKLRSYSWPGNIRELENVIHH 247
Cdd:TIGR01817 345 AVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGR-PLTITPSAIRVLMSCKWPGNVRELENCLER 423
|
250
....*....|....*....
gi 1524489508 248 TLLICRNSVIERDDLRLSN 266
Cdd:TIGR01817 424 TATLSRSGTITRSDFSCQS 442
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
25-333 |
1.29e-98 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 299.74 E-value: 1.29e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 25 DPKSQALLDHIQQVAPSEASVLIIGETGTGKELVARHIHNLSARRNRPFVAVNCGAFSESLVEAELFGHEKGAFTGALSA 104
Cdd:TIGR02915 145 SPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQ 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 105 KAGWFEEADGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPINVRVLAATNVQLEKAINAGHFREDLYYRLDV 184
Cdd:TIGR02915 225 TLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAE 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 185 VSLELSPLRERPGDILPLTRHFIEAYSQRLGYGPITISREAEQKLRSYSWPGNIRELENVIHHTLLICRNSVIERDDLRL 264
Cdd:TIGR02915 305 ISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAEGNQITAEDLGL 384
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1524489508 265 snlrierqdDSQHGTDNSAEALLARAfqklfeeqagalHEKVEDALLRAAYRFSHYNQVHTASLLGLSR 333
Cdd:TIGR02915 385 ---------DARERAETPLEVNLREV------------RERAEREAVRKAIARVDGNIARAAELLGITR 432
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
17-346 |
1.58e-97 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 297.42 E-value: 1.58e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 17 RATAQVFEDPKSQALLDHIQQVAPSEASVLIIGETGTGKELVARHIHNLSARRNRPFVAVNCGAFSESLVEAELFGHEKG 96
Cdd:TIGR01818 132 DSAELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKG 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 97 AFTGALSAKAGWFEEADGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPINVRVLAATNVQLEKAINAGHFRE 176
Cdd:TIGR01818 212 AFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFRE 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 177 DLYYRLDVVSLELSPLRERPGDILPLTRHFIEAYSQRLGYGPITISREAEQKLRSYSWPGNIRELENVIHHTLLICRNSV 256
Cdd:TIGR01818 292 DLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMASGDE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 257 IERDDLRLSNLRIERQDDS--QHGTDNSAEALLARAFQKLFEEQAGALHE---KVEDALLRAAYRFSHYNQVHTASLLGL 331
Cdd:TIGR01818 372 VLVSDLPAELALTGRPASApdSDGQDSWDEALEAWAKQALSRGEQGLLDRalpEFERPLLEAALQHTRGHKQEAAALLGW 451
|
330
....*....|....*
gi 1524489508 332 SRNvTRTRliKIGEL 346
Cdd:TIGR01818 452 GRN-TLTR--KLKEL 463
|
|
| RNA_repair_RtcR |
NF038308 |
RNA repair transcriptional activator RtcR; |
29-333 |
1.20e-96 |
|
RNA repair transcriptional activator RtcR;
Pssm-ID: 468466 [Multi-domain] Cd Length: 527 Bit Score: 297.17 E-value: 1.20e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 29 QALLDHIQQVAP-SEASVLIIGETGTGKELVARHIHNLSARRNR---PFVAVNCGAFSESLVEAELFGHEKGAFTGALSA 104
Cdd:NF038308 189 NRLIEQIERVALrSRAPILLTGPTGAGKSFLARRIYELKKRRHQvsgPFVEVNCATLRGDLAMSELFGHVKGAFTGAQAD 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 105 KAGWFEEADGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPINVRVLAATNVQLEKAINAGHFREDLYYRLDV 184
Cdd:NF038308 269 RAGLLRAADGGTLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLYARINL 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 185 VSLELSPLRERPGDILPLTRHFIEAYSQRLGYgPITISREAEQK------LRSYSWPGNIRELENVIHHTLLICRNSVIE 258
Cdd:NF038308 349 WTFRLPGLRERREDIEPNLDYELDRFARELGR-QVRFNKEARFRylafatSPEALWPGNFRELSASVTRMATLADGGRIT 427
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1524489508 259 RDDLRLSNLRIERQDdsQHGTDNSAEALLARAfqkLFEEQAGALH--EKVEDALLRAAYRFSHYNQVHTASLLGLSR 333
Cdd:NF038308 428 EELVEEEIARLRAAW--QSAPAAADDDALADL---LGGEQLAELDlfDRVQLAAVLRVCRQSRSLSAAGRRLFGVSR 499
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
26-264 |
9.89e-94 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 289.01 E-value: 9.89e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 26 PKSQALLDHIQQVAPSEASVLIIGETGTGKELVARHIHNLSARRNRPFVAVNCGAFSESLVEAELFGHEKGAFTGALSAK 105
Cdd:COG3283 211 PKMRQVIRQAKKMAMLDAPLLIQGETGTGKELLARACHLASPRGDKPFLALNCAALPDDVAESELFGYAPGAFGNAREGK 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 106 AGWFEEADGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPINVRVLAATNVQLEKAINAGHFREDLYYRLDVV 185
Cdd:COG3283 291 KGLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQKDLAELVQEGEFREDLYYRLNVL 370
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1524489508 186 SLELSPLRERPGDILPLTRHFIEAYSQRLGYGPITISREAEQKLRSYSWPGNIRELENVIHHTLLICRNSVIERDDLRL 264
Cdd:COG3283 371 TLTLPPLRERKSDILPLAEHFVARFSQQLGRPRPRLSPDLVDFLQSYPWPGNVRQLENALYRAVSLLEGDELTPEDLQL 449
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
11-349 |
6.90e-90 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 277.50 E-value: 6.90e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 11 ALATSIRATAQVFEDPKSQALLDHIQQVAPSEASVLIIGETGTGKELVARHIHNLSARRNRPFVAVNCGAFSESLVEAEL 90
Cdd:PRK11361 135 ALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESEL 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 91 FGHEKGAFTGALSAKAGWFEEADGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPINVRVLAATNVQLEKAIN 170
Cdd:PRK11361 215 FGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVK 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 171 AGHFREDLYYRLDVVSLELSPLRERPGDILPLTRHFIEAYSQRLGYGPITISREAEQKLRSYSWPGNIRELENVIHHTLL 250
Cdd:PRK11361 295 EGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVV 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 251 ICRNSVIERDDLRlSNLRierqddsqHGTDNSAEALLARAFQKLFEEQAgalhEKVEDALLRAAYRFSHYNQVHTASLLG 330
Cdd:PRK11361 375 MNSGPIIFSEDLP-PQIR--------QPVCNAGEVKTAPVGERNLKEEI----KRVEKRIIMEVLEQQEGNRTRTALMLG 441
|
330
....*....|....*....
gi 1524489508 331 LSRnvtRTRLIKIGELAVN 349
Cdd:PRK11361 442 ISR---RALMYKLQEYGID 457
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
22-265 |
2.59e-87 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 270.36 E-value: 2.59e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 22 VFEDPKSQALLDHIQQVAPSEASVLIIGETGTGKELVARHIHNLSARRNRPFVAVNCGAFSESLVEAELFGHEKGAFTGA 101
Cdd:PRK10365 142 VGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGA 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 102 LSAKAGWFEEADGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPINVRVLAATNVQLEKAINAGHFREDLYYR 181
Cdd:PRK10365 222 DKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 182 LDVVSLELSPLRERPGDILPLTRHFIEAYSQRLGYGPITISREAEQKLRSYSWPGNIRELENVIHHTLLICRNSVIERDD 261
Cdd:PRK10365 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYISERE 381
|
....
gi 1524489508 262 LRLS 265
Cdd:PRK10365 382 LPLA 385
|
|
| phageshock_pspF |
TIGR02974 |
psp operon transcriptional activator PspF; Members of this protein family are PspF, the ... |
30-332 |
5.34e-87 |
|
psp operon transcriptional activator PspF; Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH [Regulatory functions, DNA interactions]
Pssm-ID: 274371 [Multi-domain] Cd Length: 329 Bit Score: 265.70 E-value: 5.34e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 30 ALLDHIQQVAPSEASVLIIGETGTGKELVARHIHNLSARRNRPFVAVNCGAFSESLVEAELFGHEKGAFTGALSAKAGWF 109
Cdd:TIGR02974 10 EVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRF 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 110 EEADGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPINVRVLAATNVQLEKAINAGHFREDLYYRL--DVVSL 187
Cdd:TIGR02974 90 ERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLafDVITL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 188 elSPLRERPGDILPLTRHFIEAYSQRLGYGPIT-ISREAEQKLRSYSWPGNIRELENVIHHTLLICRNSVIERDDLRL-- 264
Cdd:TIGR02974 170 --PPLRERQEDIMLLAEHFAIRMARELGLPLFPgFTPQAREQLLEYHWPGNVRELKNVVERSVYRHGLEEAPIDEIIIdp 247
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1524489508 265 --SNLR--IERQDDSQHGTDNSAEAlLARAFQKLFEEQAGALHEKVEDALLRAAYRFSHYNQVHTASLLGLS 332
Cdd:TIGR02974 248 faSPWRpkQAAPAVDEVNSTPTDLP-SPSSIAAAFPLDLKQAQQDYEIELLQQALAEAQFNQRKAAELLGLT 318
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
7-333 |
1.09e-86 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 271.59 E-value: 1.09e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 7 PPSPALATSIRATAQVFEDPKSQALLDHIQQVAPSEASVLIIGETGTGKELVARHIH--------NLSARRNRPFVAVNC 78
Cdd:PRK15424 207 ATRNALRTRYVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHreyfarhdARQGKKSHPFVAVNC 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 79 GAFSESLVEAELFGHEKGAFTGAL-SAKAGWFEEADGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPINVRV 157
Cdd:PRK15424 287 GAIAESLLEAELFGYEEGAFTGSRrGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRV 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 158 LAATNVQLEKAINAGHFREDLYYRLDVVSLELSPLRERPGDILPLTRHFIEaysQRLGYGPITISREAEQKL-------R 230
Cdd:PRK15424 367 ISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLK---QSLAALSAPFSAALRQGLqqcetllL 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 231 SYSWPGNIRELENvihhtllicrnsVIERDDLRLsnlrierqddSQHGTDNSAEALLARAFQKLFEEQAGALHEKVEDAL 310
Cdd:PRK15424 444 HYDWPGNVRELRN------------LMERLALFL----------SVEPTPDLTPQFLQLLLPELARESAKTPAPRLLAAT 501
|
330 340
....*....|....*....|...
gi 1524489508 311 LRAAYRFSHYNQVHTASLLGLSR 333
Cdd:PRK15424 502 LQQALERFNGDKTAAANYLGISR 524
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
22-257 |
1.13e-83 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 261.31 E-value: 1.13e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 22 VFEDPKSQALLDHIQQVAPSEASVLIIGETGTGKELVARHIHNLSARRNRPFVAVNCGAFSESLVEAELFGHEKGAFTGA 101
Cdd:PRK15115 137 VTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGA 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 102 LSAKAGWFEEADGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPINVRVLAATNVQLEKAINAGHFREDLYYR 181
Cdd:PRK15115 217 VSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYR 296
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1524489508 182 LDVVSLELSPLRERPGDILPLTRHFIEAYSQRLGYGPITISREAEQKLRSYSWPGNIRELENVIHHTLLICRNSVI 257
Cdd:PRK15115 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVI 372
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
35-340 |
1.29e-83 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 263.64 E-value: 1.29e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 35 IQQVAPSEASVLIIGETGTGKELVARHIHNLSARRNRPFVAVNCGAFSESLVEAELFGHEKGAFTGAL-SAKAGWFEEAD 113
Cdd:TIGR02329 228 VRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARrGGRTGLIEAAH 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 114 GGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPINVRVLAATNVQLEKAINAGHFREDLYYRLDVVSLELSPLR 193
Cdd:TIGR02329 308 RGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLR 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 194 ERPGDILPLTRHFIE--AYSQRLGYGPITISREA--EQKLRSYSWPGNIRELENVIHHTLLICrnSVIERDDLRLSNLRI 269
Cdd:TIGR02329 388 ERPGDILPLAAEYLVqaAAALRLPDSEAAAQVLAgvADPLQRYPWPGNVRELRNLVERLALEL--SAMPAGALTPDVLRA 465
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1524489508 270 --ERQDDSQHGTDNSAEALLARAfqklfeeqagalheKVEDALLRAAYRFSHYNQVHTASLLGLSRNVTRTRL 340
Cdd:TIGR02329 466 laPELAEASGKGKTSALSLRERS--------------RVEALAVRAALERFGGDRDAAAKALGISRTTLWRRL 524
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
30-258 |
5.62e-79 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 255.53 E-value: 5.62e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 30 ALLDHIQQVAPSEASVLIIGETGTGKELVARHIHNLSARRNRPFVAVNCGAFSESLVEAELFGHEKGAFTGALSAKAGWF 109
Cdd:PRK15429 387 SVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRF 466
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 110 EEADGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPINVRVLAATNVQLEKAINAGHFREDLYYRLDVVSLEL 189
Cdd:PRK15429 467 ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHL 546
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1524489508 190 SPLRERPGDILPLTRHFIEAYSQRLGYGPITISREAEQKLRSYSWPGNIRELENVIHHTLLICRNSVIE 258
Cdd:PRK15429 547 PPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQ 615
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
7-342 |
2.26e-78 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 248.25 E-value: 2.26e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 7 PPSPALATSIraTAQVFEDPKSQALLDHIQQVAPSEASVLIIGETGTGKELVARHIHNLSARRNRPFVAVNCGAFSESLV 86
Cdd:PRK10923 128 PRNIQVNGPT--TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 87 EAELFGHEKGAFTGALSAKAGWFEEADGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPINVRVLAATNVQLE 166
Cdd:PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLE 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 167 KAINAGHFREDLYYRLDVVSLELSPLRERPGDILPLTRHFIEAYSQRLGYGPITISREAEQKLRSYSWPGNIRELENVIH 246
Cdd:PRK10923 286 QRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCR 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 247 HTLLICRNSVIERDDLRLSNLRIERQDDSQHGTDNSAEALLARAFQKLFEE-QAGALHE---KVEDALLRAAYRFSHYNQ 322
Cdd:PRK10923 366 WLTVMAAGQEVLIQDLPGELFESTVPESTSQMQPDSWATLLAQWADRALRSgHQNLLSEaqpELERTLLTTALRHTQGHK 445
|
330 340
....*....|....*....|
gi 1524489508 323 VHTASLLGLSRNvTRTRLIK 342
Cdd:PRK10923 446 QEAARLLGWGRN-TLTRKLK 464
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
32-342 |
3.65e-77 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 240.73 E-value: 3.65e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 32 LDHIQQVAPSEASVLIIGETGTGKELVARHIHNLSARRNRPFVAVNCGAFSESLVEAELFGHEKGAFTGALSAKAGWFEE 111
Cdd:PRK11608 19 LEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFER 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 112 ADGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPINVRVLAATNVQLEKAINAGHFREDLYYRL--DVVslEL 189
Cdd:PRK11608 99 ADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLafDVV--QL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 190 SPLRERPGDILPLTRHFIEAYSQRLGYgPI--TISREAEQKLRSYSWPGNIRELENVIHHTLLICRNSVIERDDLRLSNL 267
Cdd:PRK11608 177 PPLRERQSDIMLMAEHFAIQMCRELGL-PLfpGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSEYPLDNIIIDPF 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 268 RieRQDDSQHGTDNSAEALLA-----RAFQklfeeqagalHEKvEDALLRAAYRFSHYNQVHTASLLGLSRNVTRTRLIK 342
Cdd:PRK11608 256 K--RRPAEEAIAVSETTSLPTlpldlREWQ----------HQQ-EKELLQRSLQQAKFNQKRAAELLGLTYHQLRALLKK 322
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
26-249 |
1.36e-71 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 231.88 E-value: 1.36e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 26 PKSQALLDHIQQVAPSEASVLIIGETGTGKELVARHIHNLSARRNRPFVAVNCGAFSESLVEAELFGHEKGAFTGALSAK 105
Cdd:PRK10820 211 PKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGK 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 106 AGWFEEADGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPINVRVLAATNVQLEKAINAGHFREDLYYRLDVV 185
Cdd:PRK10820 291 KGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVL 370
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1524489508 186 SLELSPLRERPGDILPLTRHFIEAYSQRLGYGPITISREAEQKLRSYSWPGNIRELENVIHHTL 249
Cdd:PRK10820 371 TLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRAL 434
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
28-344 |
6.77e-68 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 217.02 E-value: 6.77e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 28 SQALLDHIQQVApSEASVLIIGETGTGKELVARHIHNLSARRNRPFVAVNCGAFSESLVEAelfghekgaftgalsakag 107
Cdd:COG3604 102 SEEDLRLLETLA-SLAAVAILGETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES------------------- 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 108 wfeeadggtlfldeigdlpmaiqvkllrvLQEREVVRLGSRKSIPINVRVLAATNVQLEKAINAGHFREDLYYRLDVVSL 187
Cdd:COG3604 162 -----------------------------LQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFPI 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 188 ELSPLRERPGDILPLTRHFIEAYSQRLGYGPITISREAEQKLRSYSWPGNIRELENVIHHTLLICRNSVIERDDLrlsnl 267
Cdd:COG3604 213 RLPPLRERREDIPLLAEHFLEKFSRRLGKPILRLSPEALEALMAYPWPGNVRELENVIERAVILAEGGVLDADDL----- 287
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1524489508 268 rierqddsqhgTDNSAEALlarafqklfeeqagalhEKVEDALLRAAYRFSHYNQVHTASLLGLSRNVTRTRLIKIG 344
Cdd:COG3604 288 -----------APGSREAL-----------------EEVEREHILEALERTGGNIAGAARLLGLTPSTLRSRMKKLG 336
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
24-281 |
4.24e-51 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 180.26 E-value: 4.24e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 24 EDPKSQALLDHIQQVAPSEASVLIIGETGTGKELVARHIHNLSARRNRPFVAVNCGAFSESLVEAELFGhekGAFTGALS 103
Cdd:PRK11388 330 DSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLG---SDRTDSEN 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 104 AKAGWFEEADGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPINVRVLAATNVQLEKAINAGHFREDLYYRLD 183
Cdd:PRK11388 407 GRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALH 486
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 184 VVSLELSPLRERPGDILPLTRHFIEAYSQRLGYgPITISREAEQKLRSYSWPGNIRELENVIHHTLLICRNSVIERDDLR 263
Cdd:PRK11388 487 AFEITIPPLRMRREDIPALVNNKLRSLEKRFST-RLKIDDDALARLVSYRWPGNDFELRSVIENLALSSDNGRIRLSDLP 565
|
250 260
....*....|....*....|.
gi 1524489508 264 LSnLRIER---QDDSQHGTDN 281
Cdd:PRK11388 566 EH-LFTEQatdDVSATRLSTS 585
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
30-241 |
3.95e-47 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 167.70 E-value: 3.95e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 30 ALLDHIQQVA-PSEASVLIIGETGTGKELVARHIHNLSARRNR---PFVAVNC------GAFSEslveaeLFGHEKGAFT 99
Cdd:COG4650 195 RLIEQIERVAiRSRAPILLTGPTGAGKSQLARRIYELKKARHQvsgRFVEVNCatlrgdGAMSA------LFGHVKGAFT 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 100 GALSAKAGWFEEADGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPINVRVLAATNVQLEKAINAGHFREDLY 179
Cdd:COG4650 269 GAVSDRAGLLRSADGGVLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLL 348
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1524489508 180 YRLDVVSLELSPLRERPGDILPLTRHFIEAYSQRLGYgPITISREAEQKLRSY------SWPGNIREL 241
Cdd:COG4650 349 ARINLWTFRLPGLAERREDIEPNLDYELARFAREQGR-RVRFNKEARARYLAFatspeaLWSGNFRDL 415
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
45-277 |
2.92e-32 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 127.92 E-value: 2.92e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 45 VLIIGETGTGKELVARHIHN--LSARR---NRPFVAVNCGAFSES--LVEAELFGHEKGAFTGALSAKAGWFEEADGGTL 117
Cdd:COG1221 133 TLILGPTGVGKSFFAELMYEyaIEIGVlpeDAPFVVFNCADYANNpqLLMSQLFGYVKGAFTGADKDKEGLIEKADGGIL 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 118 FLDEIGDLPMAIQVKLLRVLQEREVVRLG-SRKSIPINVRVLAATNVQLEKAInaghfredlyyrLDV------VSLELS 190
Cdd:COG1221 213 FLDEVHRLPPEGQEMLFTFMDKGIYRRLGeTEKTRKANVRIIFATTEDPESSL------------LKTflrripMVIKLP 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 191 PLRERP-GDILPLTRHFIEAYSQRLGyGPITISREAEQKLRSYSWPGNIRELENVIHhtlLICRNSVIERDDLRLSNLRI 269
Cdd:COG1221 281 SLEERSlEERLELIKHFFKEEAKRLN-KPIKVSKEVLKALLLYDCPGNIGQLKSDIQ---LACAKAFLNYITNKKEEIEI 356
|
....*...
gi 1524489508 270 ERQDDSQH 277
Cdd:COG1221 357 TLSDLPEN 364
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
40-185 |
5.19e-24 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 96.45 E-value: 5.19e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 40 PSEASVLIIGETGTGKELVARHIHNLSARRNRPFVAVNCGAFSESLVEAELFGHEKGAFTGALsakagwFEEADGGTLFL 119
Cdd:cd00009 17 PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFEL------AEKAKPGVLFI 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1524489508 120 DEIGDLPMAIQVKLLRVLQEREVVRLGSRksipiNVRVLAATNvqlekAINAGHFREDLYYRLDVV 185
Cdd:cd00009 91 DEIDSLSRGAQNALLRVLETLNDLRIDRE-----NVRVIGATN-----RPLLGDLDRALYDRLDIR 146
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
26-192 |
8.67e-21 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 87.01 E-value: 8.67e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 26 PKSQALLDHIQQVAPSEASVLIIGETGTGKELVARHIHNLSARRNRPFVAVNCGafseslveaelfghekgaftgalSAK 105
Cdd:pfam14532 5 AAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLA-----------------------HAP 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 106 AGWFEEADGGTLFLDEIGDLPMAIQVKLLRVLQEREvvrlgsrksiPINVRVLAATNVQLEKAINAGHFREDLYYRLDVV 185
Cdd:pfam14532 62 LELLEQAKGGTLYLKDIADLSKALQKGLLLLLAKAE----------GYRVRLVCTSSKDLPQLAAAGLFDEQLYFELSAL 131
|
....*..
gi 1524489508 186 SLELSPL 192
Cdd:pfam14532 132 RLHVPPL 138
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
44-182 |
1.32e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 58.92 E-value: 1.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 44 SVLIIGETGTGKELVARHIHNLSARRNRPFVAVNCGAFSESLVEA---ELFGHEKGAFTGALSAKaGWFEEA---DGGTL 117
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQlllIIVGGKKASGSGELRLR-LALALArklKPDVL 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1524489508 118 FLDEIGDLPMAIQVKLLRVLQErevVRLGSRKSIPINVRVLAATN--VQLEKAINAGHFREDLYYRL 182
Cdd:smart00382 83 ILDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNdeKDLGPALLRRRFDRRIVLLL 146
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
44-164 |
1.66e-09 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 55.38 E-value: 1.66e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 44 SVLIIGETGTGKELVARHIhnLSARRNRPFVAVNCGAFSEslvEAELFG----------HEKGAFTGAlsAKAGWFeead 113
Cdd:pfam07728 1 GVLLVGPPGTGKTELAERL--AAALSNRPVFYVQLTRDTT---EEDLFGrrnidpggasWVDGPLVRA--AREGEI---- 69
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1524489508 114 ggtLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSI---PINVRVLAATNVQ 164
Cdd:pfam07728 70 ---AVLDEINRANPDVLNSLLSLLDERRLLLPDGGELVkaaPDGFRLIATMNPL 120
|
|
| Fis |
COG2901 |
DNA-binding protein Fis (factor for inversion stimulation) [Transcription]; |
274-344 |
1.16e-04 |
|
DNA-binding protein Fis (factor for inversion stimulation) [Transcription];
Pssm-ID: 442146 [Multi-domain] Cd Length: 83 Bit Score: 40.18 E-value: 1.16e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1524489508 274 DSQHGTDNSAEALLARAFQKLFEEQAGALHE----KVEDALLRAAYRFSHYNQVHTASLLGLSRNVTRTRLIKIG 344
Cdd:COG2901 7 ASSPPLRDCVRQALENYFADLDGEPPSDLYDmvlaEVEKPLLETVLEHTRGNQSRAAEMLGINRNTLRKKLKQYG 81
|
|
| MCM |
cd17706 |
MCM helicase family; MCM helicases are a family of helicases that play an important role in ... |
45-162 |
8.38e-03 |
|
MCM helicase family; MCM helicases are a family of helicases that play an important role in replication and homologous recombination repair. The heterohexameric ring-shaped Mcm2-7 complex is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases. Mcm8 and Mcm9, form a complex required for homologous recombination (HR) repair induced by DNA interstrand crosslinks (ICLs).
Pssm-ID: 350658 [Multi-domain] Cd Length: 311 Bit Score: 37.71 E-value: 8.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524489508 45 VLIIGETGTGKELVARHIHNLSARRNrpFVAVNcGAFSESLVEAelfgHEKGAFTGALSAKAGWFEEADGGTLFLDEIGD 124
Cdd:cd17706 44 ILLVGDPGTAKSQILKYVLKIAPRGV--YTSGK-GSSGAGLTAA----VVRDSETGEWYLEAGALVLADGGVCCIDEFDK 116
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1524489508 125 LPMAIQVKLLRVL--QEREVVRLGSRKSIPINVRVLAATN 162
Cdd:cd17706 117 MKELDRTALHEAMeqQTISIAKAGIVTTLNARCSILAAAN 156
|
|
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