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Conserved domains on  [gi|1530713613|gb|AZJ02366|]
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mobilization protein (plasmid) [Klebsiella pneumoniae subsp. pneumoniae]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
plas_excl_MbeD NF033829
MbeD family mobilization/exclusion protein; MbeD, as found in the ColE1 plasmid, was ...
1-69 5.47e-24

MbeD family mobilization/exclusion protein; MbeD, as found in the ColE1 plasmid, was originally described as a plasmid mobilization protein. Later, it was shown that MbeD additionally was responsible for a plasmid entry exclusion phenotype that had previously been ascribed to products of the exc1 and exc2 genes.


:

Pssm-ID: 411400  Cd Length: 69  Bit Score: 85.25  E-value: 5.47e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1530713613  1 MTELEKQLLSALEQLQQDYSRRLDEWESAFEEWRKMSGLMQRENAALSERVSGLSRQVQSLSEQLRRLS 69
Cdd:NF033829   1 MTELEKQLLSALEQLQQDYEQRLQEWESAFAELQKMFEVTQQENAALDERVQQLSQQVQSLSEQVERLS 69
 
Name Accession Description Interval E-value
plas_excl_MbeD NF033829
MbeD family mobilization/exclusion protein; MbeD, as found in the ColE1 plasmid, was ...
1-69 5.47e-24

MbeD family mobilization/exclusion protein; MbeD, as found in the ColE1 plasmid, was originally described as a plasmid mobilization protein. Later, it was shown that MbeD additionally was responsible for a plasmid entry exclusion phenotype that had previously been ascribed to products of the exc1 and exc2 genes.


Pssm-ID: 411400  Cd Length: 69  Bit Score: 85.25  E-value: 5.47e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1530713613  1 MTELEKQLLSALEQLQQDYSRRLDEWESAFEEWRKMSGLMQRENAALSERVSGLSRQVQSLSEQLRRLS 69
Cdd:NF033829   1 MTELEKQLLSALEQLQQDYEQRLQEWESAFAELQKMFEVTQQENAALDERVQQLSQQVQSLSEQVERLS 69
MbeD_MobD pfam04899
MbeD/MobD like; The MbeD and MobD proteins are plasmid encoded, and are involved in the ...
1-69 9.35e-22

MbeD/MobD like; The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmids mobilization and transfer in the presence of conjugative plasmids.


Pssm-ID: 113664  Cd Length: 70  Bit Score: 79.53  E-value: 9.35e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1530713613  1 MTELEKQLLSALEQLQQDYSRRLDEWESAFEEWRKMSGLMQRENAALSERVSGLSRQVQSLSEQLRRLS 69
Cdd:pfam04899  1 MTELETQLLSALEQLQQDYEQRLQEWESAFAELQRMFGLTQRENAALSEQVTGLSQQVQSLSEQVRRLS 69
 
Name Accession Description Interval E-value
plas_excl_MbeD NF033829
MbeD family mobilization/exclusion protein; MbeD, as found in the ColE1 plasmid, was ...
1-69 5.47e-24

MbeD family mobilization/exclusion protein; MbeD, as found in the ColE1 plasmid, was originally described as a plasmid mobilization protein. Later, it was shown that MbeD additionally was responsible for a plasmid entry exclusion phenotype that had previously been ascribed to products of the exc1 and exc2 genes.


Pssm-ID: 411400  Cd Length: 69  Bit Score: 85.25  E-value: 5.47e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1530713613  1 MTELEKQLLSALEQLQQDYSRRLDEWESAFEEWRKMSGLMQRENAALSERVSGLSRQVQSLSEQLRRLS 69
Cdd:NF033829   1 MTELEKQLLSALEQLQQDYEQRLQEWESAFAELQKMFEVTQQENAALDERVQQLSQQVQSLSEQVERLS 69
MbeD_MobD pfam04899
MbeD/MobD like; The MbeD and MobD proteins are plasmid encoded, and are involved in the ...
1-69 9.35e-22

MbeD/MobD like; The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmids mobilization and transfer in the presence of conjugative plasmids.


Pssm-ID: 113664  Cd Length: 70  Bit Score: 79.53  E-value: 9.35e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1530713613  1 MTELEKQLLSALEQLQQDYSRRLDEWESAFEEWRKMSGLMQRENAALSERVSGLSRQVQSLSEQLRRLS 69
Cdd:pfam04899  1 MTELETQLLSALEQLQQDYEQRLQEWESAFAELQRMFGLTQRENAALSEQVTGLSQQVQSLSEQVRRLS 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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