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RecName: Full=Photosystem II CP47 reaction center protein; AltName: Full=PSII 47 kDa protein; AltName: Full=Protein CP-47
Protein Classification
photosystem II chlorophyll-binding protein CP47 ( domain architecture ID 10000067 )
photosystem II chlorophyll-binding protein CP47 is a component of the core complex of photosystem II (PSII); it binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII
List of domain hits
Name
Accession
Description
Interval
E-value
psbB
CHL00062 photosystem II 47 kDa protein
1-504
0e+00
photosystem II 47 kDa protein
Pssm-ID: 214350
Cd Length: 504
Bit Score: 1102.44
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 1 MGLPWYRVHTVVLNDPGRL L SVH I MHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGW N I 80
Cdd:CHL00062 1 MGLPWYRVHTVVLNDPGRL I SVH L MHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGW S I 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 81 TG G T I TNPGIWSYEGVAGAHIV F SGLCFLAAIWHWVYWDLEIF C DERTGKPSLDLPKIFGIHLFL A GV G CFGFGAFHVTG 160
Cdd:CHL00062 81 TG E T V TNPGIWSYEGVAGAHIV L SGLCFLAAIWHWVYWDLEIF R DERTGKPSLDLPKIFGIHLFL S GV L CFGFGAFHVTG 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 161 L F GPGIWVSDPYGLTG R VQ S VNPAWG VD GFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSS 240
Cdd:CHL00062 161 L Y GPGIWVSDPYGLTG K VQ P VNPAWG AE GFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSS 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 241 SIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRV G AGLAEN Q SLSEAWSKIPEKLAFYDYIGNNPA 320
Cdd:CHL00062 241 SIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRV S AGLAEN L SLSEAWSKIPEKLAFYDYIGNNPA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 321 KGGLFRAG S MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVD G DGIVRADVPFRRAESKYSVEQVGVTVE 400
Cdd:CHL00062 321 KGGLFRAG A MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVD K DGIVRADVPFRRAESKYSVEQVGVTVE 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 401 FYGGELNGVS Y SDPATVKKYARRAQLGEIFE L DRATLKSDGVFRSSPRGWFTFGH V SFALLFFFGHIWHGARTLFRDVFA 480
Cdd:CHL00062 401 FYGGELNGVS F SDPATVKKYARRAQLGEIFE F DRATLKSDGVFRSSPRGWFTFGH A SFALLFFFGHIWHGARTLFRDVFA 480
490 500
....*....|....*....|....
gi 221272369 481 GIDPDLDAQVEFGAFQKLGDP S T K 504
Cdd:CHL00062 481 GIDPDLDAQVEFGAFQKLGDP T T R 504
Name
Accession
Description
Interval
E-value
psbB
CHL00062 photosystem II 47 kDa protein
1-504
0e+00
photosystem II 47 kDa protein
Pssm-ID: 214350
Cd Length: 504
Bit Score: 1102.44
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 1 MGLPWYRVHTVVLNDPGRL L SVH I MHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGW N I 80
Cdd:CHL00062 1 MGLPWYRVHTVVLNDPGRL I SVH L MHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGW S I 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 81 TG G T I TNPGIWSYEGVAGAHIV F SGLCFLAAIWHWVYWDLEIF C DERTGKPSLDLPKIFGIHLFL A GV G CFGFGAFHVTG 160
Cdd:CHL00062 81 TG E T V TNPGIWSYEGVAGAHIV L SGLCFLAAIWHWVYWDLEIF R DERTGKPSLDLPKIFGIHLFL S GV L CFGFGAFHVTG 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 161 L F GPGIWVSDPYGLTG R VQ S VNPAWG VD GFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSS 240
Cdd:CHL00062 161 L Y GPGIWVSDPYGLTG K VQ P VNPAWG AE GFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSS 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 241 SIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRV G AGLAEN Q SLSEAWSKIPEKLAFYDYIGNNPA 320
Cdd:CHL00062 241 SIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRV S AGLAEN L SLSEAWSKIPEKLAFYDYIGNNPA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 321 KGGLFRAG S MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVD G DGIVRADVPFRRAESKYSVEQVGVTVE 400
Cdd:CHL00062 321 KGGLFRAG A MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVD K DGIVRADVPFRRAESKYSVEQVGVTVE 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 401 FYGGELNGVS Y SDPATVKKYARRAQLGEIFE L DRATLKSDGVFRSSPRGWFTFGH V SFALLFFFGHIWHGARTLFRDVFA 480
Cdd:CHL00062 401 FYGGELNGVS F SDPATVKKYARRAQLGEIFE F DRATLKSDGVFRSSPRGWFTFGH A SFALLFFFGHIWHGARTLFRDVFA 480
490 500
....*....|....*....|....
gi 221272369 481 GIDPDLDAQVEFGAFQKLGDP S T K 504
Cdd:CHL00062 481 GIDPDLDAQVEFGAFQKLGDP T T R 504
PsbB
COG5717 Photosystem II reaction center chlorophyll a-binding protein CP47, PsbB [Energy production and ...
1-506
0e+00
Photosystem II reaction center chlorophyll a-binding protein CP47, PsbB [Energy production and conversion]; Photosystem II reaction center chlorophyll a-binding protein CP47, PsbB is part of the Pathway/BioSystem: Photosystem II
Pssm-ID: 444427
Cd Length: 510
Bit Score: 935.02
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 1 MGLPWYRVHTVVLNDPGRL LS VH I MHTALVAGWAGSMALYELA V FDPSDPVL D PMWRQGMFV I PFM T RLG I TNSWGGW NI 80
Cdd:COG5717 1 MGLPWYRVHTVVLNDPGRL IA VH L MHTALVAGWAGSMALYELA I FDPSDPVL N PMWRQGMFV M PFM A RLG V TNSWGGW SV 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 81 TG GTITN PG I WS Y EGVA G AHIV F SGL C FLAA I WHWVYWDLEIF C D E R T G K P S LDLPKIFGIHL F LAG VG CFGFGAFH V TG 160
Cdd:COG5717 81 TG ESVAD PG F WS F EGVA A AHIV L SGL L FLAA C WHWVYWDLEIF R D P R N G E P A LDLPKIFGIHL L LAG LL CFGFGAFH L TG 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 161 L FGPG I WVSDPYGLTG R VQ S V N PAWG VD GF D P FV PGG IAS HHIAAG TL GI LA G L FH LS VRPP Q RLYK G LRMGNIETVL S S 240
Cdd:COG5717 161 I FGPG M WVSDPYGLTG H VQ P V A PAWG AE GF N P YN PGG VVA HHIAAG IV GI IG G I FH IV VRPP E RLYK A LRMGNIETVL A S 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 241 SI AAVFFAAFVVAGTMWYG S ATTPIELFGPTRYQWDQGYF QQ EI Y RRV G A G LAE NQ SLSEAWS K IPEKLAFYDY I GN N PA 320
Cdd:COG5717 241 AL AAVFFAAFVVAGTMWYG T ATTPIELFGPTRYQWDQGYF KK EI N RRV Q A N LAE GK SLSEAWS A IPEKLAFYDY V GN S PA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 321 KGGLFR A G S M D NGDG I A VG WLGHP I F R DKEGRELFVRRMP T FFETFPVVL V D G DGIVRAD V PFRRAESKYS V EQ V GVTV E 400
Cdd:COG5717 321 KGGLFR V G P M N NGDG V A TA WLGHP V F K DKEGRELFVRRMP N FFETFPVVL T D K DGIVRAD I PFRRAESKYS F EQ T GVTV S 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 401 F Y GG E LNG VSYS DPA T VKKYAR R AQLGE I FE L DR A T LK SDGVFR S S P RGWF T F G H VS FALLFFFGHIWHGART L FRDVFA 480
Cdd:COG5717 401 F V GG T LNG QTFT DPA D VKKYAR K AQLGE P FE F DR E T YN SDGVFR T S T RGWF A F A H AC FALLFFFGHIWHGART I FRDVFA 480
490 500
....*....|....*....|....*..
gi 221272369 481 GIDPDL - DA QVEFG A FQKLGDP S T K K P 506
Cdd:COG5717 481 GIDPDL q EE QVEFG V FQKLGDP T T R K K 507
PS_II_CP47
TIGR03039 photosystem II chlorophyll-binding protein CP47; [Energy metabolism, Photosynthesis]
1-504
0e+00
photosystem II chlorophyll-binding protein CP47; [Energy metabolism, Photosynthesis]
Pssm-ID: 163117
Cd Length: 504
Bit Score: 882.64
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 1 MGLPWYRVHTVV L NDPGRL LS VH I MHTALVAGWAGSMALYELA V FDPSDPVL D PMWRQGM F V I PFM T RLG I T N SWGGW N I 80
Cdd:TIGR03039 1 MGLPWYRVHTVV I NDPGRL IA VH L MHTALVAGWAGSMALYELA I FDPSDPVL N PMWRQGM Y V L PFM A RLG V T G SWGGW S I 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 81 TG G T ITN PG I WS Y EGVA G AHIV F SGL C FLAA I WHWVYWDLE I F C D E RTG K P S LDLPKIFGIHLFL A G VG CFGFGAFH VT G 160
Cdd:TIGR03039 81 TG E T GVD PG F WS F EGVA A AHIV L SGL L FLAA C WHWVYWDLE L F R D P RTG E P A LDLPKIFGIHLFL S G LL CFGFGAFH LS G 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 161 LFGPG I WVSDPYGLTG R VQ S V N P A WG V DGF D PF V PGGI AS HHIAAG TL GI LA GLFH LS VRPP Q RLYK G LRMGNIETVL S S 240
Cdd:TIGR03039 161 LFGPG M WVSDPYGLTG H VQ P V A P E WG A DGF N PF N PGGI VA HHIAAG IV GI IG GLFH IT VRPP E RLYK A LRMGNIETVL A S 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 241 S I AAVFFAAFVVAGTMWYGSATTP I ELFGPTRYQWDQGYF Q QEI Y RRV G A GL A ENQ SL S EAWS K IPEKLAFYDY I GN N PA 320
Cdd:TIGR03039 241 S L AAVFFAAFVVAGTMWYGSATTP V ELFGPTRYQWDQGYF R QEI N RRV Q A AV A SGA SL E EAWS A IPEKLAFYDY V GN S PA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 321 KGGLFR A G S M D NGDGIA V GWLGH PI F R DKEGREL F VRR M P T FFE T FPV V L V D GD G I VRAD V PFRRAESKYS V EQ V GVTV E 400
Cdd:TIGR03039 321 KGGLFR T G P M N NGDGIA T GWLGH IV F K DKEGREL R VRR L P N FFE N FPV I L T D SN G V VRAD I PFRRAESKYS F EQ T GVTV S 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 401 FYGG E LNG VSYS DPA T VK K YAR R AQLGE I FE L D RA TL K SDGVFR S SPRGWFTF G H VS FALLFFFGHIWHGARTLFRDVFA 480
Cdd:TIGR03039 401 FYGG D LNG QTFT DPA Q VK S YAR K AQLGE A FE F D TE TL N SDGVFR T SPRGWFTF A H AV FALLFFFGHIWHGARTLFRDVFA 480
490 500
....*....|....*....|....
gi 221272369 481 GIDPDL DA QVEFG A FQKLGDP S T K 504
Cdd:TIGR03039 481 GIDPDL GE QVEFG V FQKLGDP T T R 504
PSII
pfam00421 Photosystem II protein;
1-500
0e+00
Photosystem II protein;
Pssm-ID: 425673
Cd Length: 499
Bit Score: 853.34
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 1 MGLPWYRVHTVV L NDPGRLL S VH I MHTALVAGWAGSMAL Y ELA V FDPSDPVL D PMWRQGM F V I PFM T RLG I T N SWGGW NI 80
Cdd:pfam00421 1 MGLPWYRVHTVV I NDPGRLL G VH L MHTALVAGWAGSMAL F ELA H FDPSDPVL K PMWRQGM I V M PFM A RLG V T V SWGGW SV 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 81 TG G T I TNPG I WS Y EGVA G AHI VF SGL C FLAAIWHWVYWDLEI FC D E RTG K P S LDLPKIFGIHL F L A G V GCFGFGAFH V TG 160
Cdd:pfam00421 81 TG E T V TNPG F WS F EGVA A AHI IL SGL L FLAAIWHWVYWDLEI WK D K RTG E P A LDLPKIFGIHL I L L G L GCFGFGAFH F TG 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 161 L F G p G I WVSDPYG L TG R VQ S V N P A WG VD GF D PF V PGGI AS HHIAAG T LGI LA G L FH LSV RPP Q RLY KG LRMGN I ETVLSS 240
Cdd:pfam00421 161 L Y G - G M WVSDPYG Y TG H VQ P V A P V WG AE GF N PF N PGGI VG HHIAAG I LGI IG G I FH ITT RPP E RLY RA LRMGN G ETVLSS 239
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 241 S I AAVFFAAF VV AGTMWYG S ATTP I ELFGPTRYQWD Q GYFQQEI Y RRV GAGL AE NQ S LSE AWS K IP E KLAFYDYIGN N PA 320
Cdd:pfam00421 240 S L AAVFFAAF IA AGTMWYG N ATTP S ELFGPTRYQWD S GYFQQEI D RRV QSSV AE GA S QAQ AWS F IP R KLAFYDYIGN A PA 319
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 321 KGGLFR A G S M D NGDG I A VG WLGH P IF R D KE GREL F VRRMP T FFETFPVVLVD G DGIVRAD V PFRR A ESKYS V EQ V GVTV E 400
Cdd:pfam00421 320 KGGLFR V G P M V NGDG L A RS WLGH I IF G D ET GREL D VRRMP N FFETFPVVLVD K DGIVRAD I PFRR G ESKYS L EQ L GVTV Q 399
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 401 FYGGELNG VSYS DP AT VK K YAR R AQLGE I F EL DR A T LK SDGVFRSSPRGW FT FGH VS FALLFFFGH I WHG A RTLFRDVFA 480
Cdd:pfam00421 400 FYGGELNG QTFT DP WQ VK R YAR H AQLGE L F SF DR V T TE SDGVFRSSPRGW LA FGH FC FALLFFFGH L WHG G RTLFRDVFA 479
490 500
....*....|....*....|
gi 221272369 481 G ID P DL D A QVEFG A FQKLGD 500
Cdd:pfam00421 480 G FE P GI D R QVEFG V FQKLGD 499
Name
Accession
Description
Interval
E-value
psbB
CHL00062 photosystem II 47 kDa protein
1-504
0e+00
photosystem II 47 kDa protein
Pssm-ID: 214350
Cd Length: 504
Bit Score: 1102.44
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 1 MGLPWYRVHTVVLNDPGRL L SVH I MHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGW N I 80
Cdd:CHL00062 1 MGLPWYRVHTVVLNDPGRL I SVH L MHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGW S I 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 81 TG G T I TNPGIWSYEGVAGAHIV F SGLCFLAAIWHWVYWDLEIF C DERTGKPSLDLPKIFGIHLFL A GV G CFGFGAFHVTG 160
Cdd:CHL00062 81 TG E T V TNPGIWSYEGVAGAHIV L SGLCFLAAIWHWVYWDLEIF R DERTGKPSLDLPKIFGIHLFL S GV L CFGFGAFHVTG 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 161 L F GPGIWVSDPYGLTG R VQ S VNPAWG VD GFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSS 240
Cdd:CHL00062 161 L Y GPGIWVSDPYGLTG K VQ P VNPAWG AE GFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSS 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 241 SIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRV G AGLAEN Q SLSEAWSKIPEKLAFYDYIGNNPA 320
Cdd:CHL00062 241 SIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRV S AGLAEN L SLSEAWSKIPEKLAFYDYIGNNPA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 321 KGGLFRAG S MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVD G DGIVRADVPFRRAESKYSVEQVGVTVE 400
Cdd:CHL00062 321 KGGLFRAG A MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVD K DGIVRADVPFRRAESKYSVEQVGVTVE 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 401 FYGGELNGVS Y SDPATVKKYARRAQLGEIFE L DRATLKSDGVFRSSPRGWFTFGH V SFALLFFFGHIWHGARTLFRDVFA 480
Cdd:CHL00062 401 FYGGELNGVS F SDPATVKKYARRAQLGEIFE F DRATLKSDGVFRSSPRGWFTFGH A SFALLFFFGHIWHGARTLFRDVFA 480
490 500
....*....|....*....|....
gi 221272369 481 GIDPDLDAQVEFGAFQKLGDP S T K 504
Cdd:CHL00062 481 GIDPDLDAQVEFGAFQKLGDP T T R 504
PLN00068
PLN00068 photosystem II CP47 chlorophyll A apoprotein; Provisional
1-508
0e+00
photosystem II CP47 chlorophyll A apoprotein; Provisional
Pssm-ID: 177698
Cd Length: 508
Bit Score: 1062.62
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 1 MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGW N I 80
Cdd:PLN00068 1 MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGW S I 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 81 TGGT I TNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFL A GV G CFGFGAFHVTG 160
Cdd:PLN00068 81 TGGT V TNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFL S GV A CFGFGAFHVTG 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 161 L F GPGIWVSDPYGLTG R VQ S VNPAWG VD GFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSS 240
Cdd:PLN00068 161 L Y GPGIWVSDPYGLTG K VQ P VNPAWG AE GFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSS 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 241 SIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRV GA GLAENQSLSEAWSKIPEKLAFYDYIGNNPA 320
Cdd:PLN00068 241 SIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRV SS GLAENQSLSEAWSKIPEKLAFYDYIGNNPA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 321 KGGLFRAGSMDNGDGIAVGWLGHP I FRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESKYSVEQVGVTVE 400
Cdd:PLN00068 321 KGGLFRAGSMDNGDGIAVGWLGHP V FRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESKYSVEQVGVTVE 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 401 FYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRGWFTFGH V SFALLFFFGHIWHGARTLFRDVFA 480
Cdd:PLN00068 401 FYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRGWFTFGH A SFALLFFFGHIWHGARTLFRDVFA 480
490 500
....*....|....*....|....*...
gi 221272369 481 GIDPDLDAQVEFGAFQKLGDP S TK KPV V 508
Cdd:PLN00068 481 GIDPDLDAQVEFGAFQKLGDP T TK RQA V 508
PsbB
COG5717 Photosystem II reaction center chlorophyll a-binding protein CP47, PsbB [Energy production and ...
1-506
0e+00
Photosystem II reaction center chlorophyll a-binding protein CP47, PsbB [Energy production and conversion]; Photosystem II reaction center chlorophyll a-binding protein CP47, PsbB is part of the Pathway/BioSystem: Photosystem II
Pssm-ID: 444427
Cd Length: 510
Bit Score: 935.02
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 1 MGLPWYRVHTVVLNDPGRL LS VH I MHTALVAGWAGSMALYELA V FDPSDPVL D PMWRQGMFV I PFM T RLG I TNSWGGW NI 80
Cdd:COG5717 1 MGLPWYRVHTVVLNDPGRL IA VH L MHTALVAGWAGSMALYELA I FDPSDPVL N PMWRQGMFV M PFM A RLG V TNSWGGW SV 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 81 TG GTITN PG I WS Y EGVA G AHIV F SGL C FLAA I WHWVYWDLEIF C D E R T G K P S LDLPKIFGIHL F LAG VG CFGFGAFH V TG 160
Cdd:COG5717 81 TG ESVAD PG F WS F EGVA A AHIV L SGL L FLAA C WHWVYWDLEIF R D P R N G E P A LDLPKIFGIHL L LAG LL CFGFGAFH L TG 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 161 L FGPG I WVSDPYGLTG R VQ S V N PAWG VD GF D P FV PGG IAS HHIAAG TL GI LA G L FH LS VRPP Q RLYK G LRMGNIETVL S S 240
Cdd:COG5717 161 I FGPG M WVSDPYGLTG H VQ P V A PAWG AE GF N P YN PGG VVA HHIAAG IV GI IG G I FH IV VRPP E RLYK A LRMGNIETVL A S 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 241 SI AAVFFAAFVVAGTMWYG S ATTPIELFGPTRYQWDQGYF QQ EI Y RRV G A G LAE NQ SLSEAWS K IPEKLAFYDY I GN N PA 320
Cdd:COG5717 241 AL AAVFFAAFVVAGTMWYG T ATTPIELFGPTRYQWDQGYF KK EI N RRV Q A N LAE GK SLSEAWS A IPEKLAFYDY V GN S PA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 321 KGGLFR A G S M D NGDG I A VG WLGHP I F R DKEGRELFVRRMP T FFETFPVVL V D G DGIVRAD V PFRRAESKYS V EQ V GVTV E 400
Cdd:COG5717 321 KGGLFR V G P M N NGDG V A TA WLGHP V F K DKEGRELFVRRMP N FFETFPVVL T D K DGIVRAD I PFRRAESKYS F EQ T GVTV S 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 401 F Y GG E LNG VSYS DPA T VKKYAR R AQLGE I FE L DR A T LK SDGVFR S S P RGWF T F G H VS FALLFFFGHIWHGART L FRDVFA 480
Cdd:COG5717 401 F V GG T LNG QTFT DPA D VKKYAR K AQLGE P FE F DR E T YN SDGVFR T S T RGWF A F A H AC FALLFFFGHIWHGART I FRDVFA 480
490 500
....*....|....*....|....*..
gi 221272369 481 GIDPDL - DA QVEFG A FQKLGDP S T K K P 506
Cdd:COG5717 481 GIDPDL q EE QVEFG V FQKLGDP T T R K K 507
PS_II_CP47
TIGR03039 photosystem II chlorophyll-binding protein CP47; [Energy metabolism, Photosynthesis]
1-504
0e+00
photosystem II chlorophyll-binding protein CP47; [Energy metabolism, Photosynthesis]
Pssm-ID: 163117
Cd Length: 504
Bit Score: 882.64
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 1 MGLPWYRVHTVV L NDPGRL LS VH I MHTALVAGWAGSMALYELA V FDPSDPVL D PMWRQGM F V I PFM T RLG I T N SWGGW N I 80
Cdd:TIGR03039 1 MGLPWYRVHTVV I NDPGRL IA VH L MHTALVAGWAGSMALYELA I FDPSDPVL N PMWRQGM Y V L PFM A RLG V T G SWGGW S I 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 81 TG G T ITN PG I WS Y EGVA G AHIV F SGL C FLAA I WHWVYWDLE I F C D E RTG K P S LDLPKIFGIHLFL A G VG CFGFGAFH VT G 160
Cdd:TIGR03039 81 TG E T GVD PG F WS F EGVA A AHIV L SGL L FLAA C WHWVYWDLE L F R D P RTG E P A LDLPKIFGIHLFL S G LL CFGFGAFH LS G 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 161 LFGPG I WVSDPYGLTG R VQ S V N P A WG V DGF D PF V PGGI AS HHIAAG TL GI LA GLFH LS VRPP Q RLYK G LRMGNIETVL S S 240
Cdd:TIGR03039 161 LFGPG M WVSDPYGLTG H VQ P V A P E WG A DGF N PF N PGGI VA HHIAAG IV GI IG GLFH IT VRPP E RLYK A LRMGNIETVL A S 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 241 S I AAVFFAAFVVAGTMWYGSATTP I ELFGPTRYQWDQGYF Q QEI Y RRV G A GL A ENQ SL S EAWS K IPEKLAFYDY I GN N PA 320
Cdd:TIGR03039 241 S L AAVFFAAFVVAGTMWYGSATTP V ELFGPTRYQWDQGYF R QEI N RRV Q A AV A SGA SL E EAWS A IPEKLAFYDY V GN S PA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 321 KGGLFR A G S M D NGDGIA V GWLGH PI F R DKEGREL F VRR M P T FFE T FPV V L V D GD G I VRAD V PFRRAESKYS V EQ V GVTV E 400
Cdd:TIGR03039 321 KGGLFR T G P M N NGDGIA T GWLGH IV F K DKEGREL R VRR L P N FFE N FPV I L T D SN G V VRAD I PFRRAESKYS F EQ T GVTV S 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 401 FYGG E LNG VSYS DPA T VK K YAR R AQLGE I FE L D RA TL K SDGVFR S SPRGWFTF G H VS FALLFFFGHIWHGARTLFRDVFA 480
Cdd:TIGR03039 401 FYGG D LNG QTFT DPA Q VK S YAR K AQLGE A FE F D TE TL N SDGVFR T SPRGWFTF A H AV FALLFFFGHIWHGARTLFRDVFA 480
490 500
....*....|....*....|....
gi 221272369 481 GIDPDL DA QVEFG A FQKLGDP S T K 504
Cdd:TIGR03039 481 GIDPDL GE QVEFG V FQKLGDP T T R 504
PSII
pfam00421 Photosystem II protein;
1-500
0e+00
Photosystem II protein;
Pssm-ID: 425673
Cd Length: 499
Bit Score: 853.34
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 1 MGLPWYRVHTVV L NDPGRLL S VH I MHTALVAGWAGSMAL Y ELA V FDPSDPVL D PMWRQGM F V I PFM T RLG I T N SWGGW NI 80
Cdd:pfam00421 1 MGLPWYRVHTVV I NDPGRLL G VH L MHTALVAGWAGSMAL F ELA H FDPSDPVL K PMWRQGM I V M PFM A RLG V T V SWGGW SV 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 81 TG G T I TNPG I WS Y EGVA G AHI VF SGL C FLAAIWHWVYWDLEI FC D E RTG K P S LDLPKIFGIHL F L A G V GCFGFGAFH V TG 160
Cdd:pfam00421 81 TG E T V TNPG F WS F EGVA A AHI IL SGL L FLAAIWHWVYWDLEI WK D K RTG E P A LDLPKIFGIHL I L L G L GCFGFGAFH F TG 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 161 L F G p G I WVSDPYG L TG R VQ S V N P A WG VD GF D PF V PGGI AS HHIAAG T LGI LA G L FH LSV RPP Q RLY KG LRMGN I ETVLSS 240
Cdd:pfam00421 161 L Y G - G M WVSDPYG Y TG H VQ P V A P V WG AE GF N PF N PGGI VG HHIAAG I LGI IG G I FH ITT RPP E RLY RA LRMGN G ETVLSS 239
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 241 S I AAVFFAAF VV AGTMWYG S ATTP I ELFGPTRYQWD Q GYFQQEI Y RRV GAGL AE NQ S LSE AWS K IP E KLAFYDYIGN N PA 320
Cdd:pfam00421 240 S L AAVFFAAF IA AGTMWYG N ATTP S ELFGPTRYQWD S GYFQQEI D RRV QSSV AE GA S QAQ AWS F IP R KLAFYDYIGN A PA 319
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 321 KGGLFR A G S M D NGDG I A VG WLGH P IF R D KE GREL F VRRMP T FFETFPVVLVD G DGIVRAD V PFRR A ESKYS V EQ V GVTV E 400
Cdd:pfam00421 320 KGGLFR V G P M V NGDG L A RS WLGH I IF G D ET GREL D VRRMP N FFETFPVVLVD K DGIVRAD I PFRR G ESKYS L EQ L GVTV Q 399
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 401 FYGGELNG VSYS DP AT VK K YAR R AQLGE I F EL DR A T LK SDGVFRSSPRGW FT FGH VS FALLFFFGH I WHG A RTLFRDVFA 480
Cdd:pfam00421 400 FYGGELNG QTFT DP WQ VK R YAR H AQLGE L F SF DR V T TE SDGVFRSSPRGW LA FGH FC FALLFFFGH L WHG G RTLFRDVFA 479
490 500
....*....|....*....|
gi 221272369 481 G ID P DL D A QVEFG A FQKLGD 500
Cdd:pfam00421 480 G FE P GI D R QVEFG V FQKLGD 499
IsiA
COG5742 Chlorophyll-binding protein PcbABC/IsiA [Energy production and conversion];
4-271
2.18e-21
Chlorophyll-binding protein PcbABC/IsiA [Energy production and conversion];
Pssm-ID: 444452
Cd Length: 346
Bit Score: 95.40
E-value: 2.18e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 4 PW YRVHTVVL N DP G RL L SV H IM H T AL VAG WAG SMA L Y EL AV FDP S dpvl D PM WR QG MFVI P FMTR LG itns W G G wn IT GG 83
Cdd:COG5742 12 PW WAGNARFT N LS G KF L AA H VA H A AL IVF WAG AFT L F EL SR FDP D ---- L PM GE QG LILL P HLAT LG ---- I G V -- GE GG 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 84 TI T NP gi WS Y EGVAGA H IVF S GLCFLAAIW H WVYW -- DLE IFCDERTG K PSLD ------ L PK I F G I HL FLA G V G CFG F G A 155
Cdd:COG5742 82 VV T DT -- YP Y FVIGII H LIS S AVLGAGGLF H ALKG pe DLE DSEVGQAR K FHFE wddpkk L GF I L G H HL LFL G L G ALL F V A 159
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 156 FHVTG lfgp G IW vs DP yg LT G R V QS V NPA wgvd GFD P F V PG G ------------- IASH HI AAGT L G I LA G LF H LS V r P P 222
Cdd:COG5742 160 WAMFH ---- G LY -- DP -- AI G E V RV V TNP ---- TLN P T V IF G yqfhfafvdnled VVGG HI FVAF L L I AG G IW H IL V - K P 226
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 221272369 223 QRL YK G L RMGNI E TV LS S S I aa VFF A AFVVAGTMWYGSA T T -- P I E LF GP T 271
Cdd:COG5742 227 FGW YK K L FLLSG E AI LS Y S L -- GGL A LMGFVAAYFCAVN T L vy P V E FY GP A 275
psbC
CHL00035 photosystem II 44 kDa protein
2-271
4.28e-11
photosystem II 44 kDa protein
Pssm-ID: 214343
Cd Length: 473
Bit Score: 65.13
E-value: 4.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 2 G LP W YRVHTVVL N DP G R LL SV H IM H TA L VAG WAG S M A L Y E L A V F D P SD P vldp M WR QG MFVI P FMTR L gitnswg GW NI - 80
Cdd:CHL00035 32 G FA W WAGNARLI N LS G K LL GA H VA H AG L IVF WAG A M N L F E V A H F V P EK P ---- M YE QG LILL P HLAT L ------- GW GV g 100
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 81 T GG TITN pg IWS Y EGVAGA H IVF S GLCFLAA I W H WVYW -- D LE ---- I F cd ERTG K PSLDLPK I F GIHL F L A G V G C F -- G 152
Cdd:CHL00035 101 P GG EVID -- TFP Y FVSGVL H LIS S AVLGFGG I Y H ALLG pe T LE esfp F F -- GYVW K DKNKMTT I L GIHL I L L G I G A F ll V 176
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 153 F G A FHVT G LFGP gi W V sd P Y G LTG R V --- QSVN P A ---------- W G VD G FDPF V PG -- G I ASH H IAA G TLG IL A G LF H L 217
Cdd:CHL00035 177 F K A LYFG G VYDT -- W A -- P G G GDV R K itn LTLS P S vifgyllksp F G GE G WIVS V DN le D I IGG H VWL G SIC IL G G IW H I 252
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 221272369 218 SVR P PQRLYKGLRMGN i E TV LS S S IA A VFFAA F VVAGTM W YGSATT P I E LF GPT 271
Cdd:CHL00035 253 LTK P FAWARRAFVWSG - E AY LS Y S LG A LSVFG F IACCFV W FNNTAY P S E FY GPT 305
PsbC2
COG5744 PsbC-PsaL fusion protein [Energy production and conversion];
5-483
1.62e-05
PsbC-PsaL fusion protein [Energy production and conversion];
Pssm-ID: 444454 [Multi-domain]
Cd Length: 498
Bit Score: 47.47
E-value: 1.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 5 W YRVHTVVL N DP G R LL SV HI M H TA L VAG WAG S M A L Y EL AVFD PS D P vldp M WR QG MFVI P FMTR LG ITNS wggwni T GG T 84
Cdd:COG5744 19 W WAGNFRFV N LS G K LL GA HI A H AG L IVL WAG A M T L F EL SRYN PS L P ---- M YE QG LILL P HLAT LG FGVG ------ A GG E 88
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 85 I TN pg IWS Y EGVAGA H IVF S GLCFLAA I W H WVYWD l E IFC D ER T G -------- K PSLDLPK I F GIHL F L A G V G CF -- GFG 154
Cdd:COG5744 89 I IS -- TYP Y FVIGVL H LIS S AILGAGG I Y H ALLGP - E VLE D KG T F agffgydw K DGDKMTT I L GIHL V L L G I G AL ll VAK 165
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 155 A FHVT GLF G P gi W VSD py G LTG RV --- QSV NP --------- AWG VD G FDPF ----- V P GG iash HI AA G TLG IL A GL F H L 217
Cdd:COG5744 166 A MFWG GLF D P -- W AAG -- G GNV RV itd PTL NP lrifgylvg AWG LE G MAAV nnled V V GG ---- HI WI G LIC IL G GL W H I 237
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 218 SVR P pqrlykglrmgnietvlsssiaavffaafvvagtmwygsattpielfgptr YQ W DQGYF qqeiyrrvgaglaenqs 297
Cdd:COG5744 238 LTK P --------------------------------------------------- FA W ARRVL ----------------- 249
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 298 lse AW S kipeklafydyignnpak G GLFR A G S MD ngdgi A VGWL G hpifrdkegrelfvrrmpt FF ETFP V VLV D gdg I V 377
Cdd:COG5744 250 --- VY S ------------------ G EAYL A Y S LG ----- A IAYM G ------------------- FF AAYF V SVN D --- T V 281
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272369 378 RAD V pfrraeskysveqvgvtve FYG gelngvsysd P A tvkkyarraqlgeifeld RATLK SDG VF rs S P RGW FTFG H VS 457
Cdd:COG5744 282 YPE V ------------------- FYG ---------- P V ------------------ GTLET SDG IV -- S A RGW LALF H FV 312
490 500
....*....|....*....|....*.
gi 221272369 458 F A L LF FF GHIWH GA R T lf R DVF AG I D 483
Cdd:COG5744 313 L A V LF LL GHIWH AL R S -- R AIA AG F D 336
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
