|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
448-1240 |
2.59e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.19 E-value: 2.59e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 448 LNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAAtQLKVQLQEAER-----RWEEvqsyIRKRTAEHEAAQQDLQSKF 522
Cdd:TIGR02168 181 LERTRENLDRLEDILNELERQLKSLERQAEKAERYK-ELKAELRELELallvlRLEE----LREELEELQEELKEAEEEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 523 VAKENEVQSLHSKLTDTLVSKQQLEQRLmqlmESEQKRVNkeeSLQMQVQDILEQNEALKAQIQQFHSQIaaqtsasvla 602
Cdd:TIGR02168 256 EELTAELQELEEKLEELRLEVSELEEEI----EELQKELY---ALANEISRLEQQKQILRERLANLERQL---------- 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 603 EELHKVIAEKDKQIKQTEDSLASERDRLTSKEEELKDiqnmnflLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKI 682
Cdd:TIGR02168 319 EELEAQLEELESKLDELAEELAELEEKLEELKEELES-------LEAELEELEAELEELESRLEELEEQLETLRSKVAQL 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 683 RLLEEQLQHEISNKMEEFKILNDQNKALKSEVQKLQTLVSEQPNKDV---VEQMEKCIQEKDEKLKTVEELLETGLIQVA 759
Cdd:TIGR02168 392 ELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELqaeLEELEEELEELQEELERLEEALEELREELE 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 760 TKEEELNAIRTENSSLTKEVQDLKAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKE----------- 828
Cdd:TIGR02168 472 EAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEaalggrlqavv 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 829 -KTVQDLKQEIKALKE-EIGNVQLEKAQQLSITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWL------QDL 900
Cdd:TIGR02168 552 vENLNAAKKAIAFLKQnELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLggvlvvDDL 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 901 QEENESLKAHVQEVAQHNL------KEASSASQFEELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFK 974
Cdd:TIGR02168 632 DNALELAKKLRPGYRIVTLdgdlvrPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELE 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 975 SQIEQLKQQNYQQASSFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNERQQQVEAVELEAKEVLKKLFPKV 1054
Cdd:TIGR02168 712 EELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1055 SVPSNL--SYGEWLHGFEKKAKecmagtsgseEVKVLEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEE 1132
Cdd:TIGR02168 792 EQLKEElkALREALDELRAELT----------LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI 861
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1133 NKWKVKVDESHKTIKQMQSSFTSSEQELERLRSE----NKDIENLRREREHLEMELEKAEMERSTYVTEVRELKAQLNET 1208
Cdd:TIGR02168 862 EELEELIEELESELEALLNERASLEEALALLRSEleelSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNL 941
|
810 820 830 840
....*....|....*....|....*....|....*....|
gi 929653747 1209 LTKLRTEQN--------ERQKVAGDLHKAQQSLELIQSKI 1240
Cdd:TIGR02168 942 QERLSEEYSltleeaeaLENKIEDDEEEARRRLKRLENKI 981
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
446-983 |
1.62e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.83 E-value: 1.62e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 446 AELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAK 525
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 526 ENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEEL 605
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 606 HKVIAEKDKQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLL 685
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 686 EEQLQHEISNKMEEFKILNDQNKALKSEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEkLKTVEELLETgLIQVATKEEEL 765
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAV-LIGVEAAYEA-ALEAALAAALQ 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 766 NAIRTENSSLTKEVQDLKAKQNDQVSFASLVEELKKVIHEKDGKIKSV---------EELLEAELLKVANKEKTVQDLKQ 836
Cdd:COG1196 550 NIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIgaavdlvasDLREADARYYVLGDTLLGRTLVA 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 837 EIKALKEEIGNVQLEKAQQLSITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQ 916
Cdd:COG1196 630 ARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEEREL 709
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 929653747 917 HNLKEASSASQFEELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLfKSQIEQLKQQ 983
Cdd:COG1196 710 AEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL-ERELERLERE 775
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
458-1219 |
1.69e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.95 E-value: 1.69e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 458 LVNELTEKTGKLQQEEVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQ---QDLQSKFVAKENEVQSLHS 534
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkelYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 535 KLTDtlvSKQQLEQRLMQLMESEQKRVNKEESLQM---QVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAE 611
Cdd:TIGR02168 310 RLAN---LERQLEELEAQLEELESKLDELAEELAEleeKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 612 KDKQIKQTEDSLASERDRLtskEEELKDIQNMNFLLKAEVQKLQALANEQAAAAH-----ELEKMQQSVYVKDDKIRLLE 686
Cdd:TIGR02168 387 KVAQLELQIASLNNEIERL---EARLERLEDRRERLQQEIEELLKKLEEAELKELqaeleELEEELEELQEELERLEEAL 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 687 EQLQHEISNKMEEFKILNDQNKALKSEVQKLQTLVS--EQPNKDVVEQMEKCIQEKDE-----KLKTVEELLETGLiqVA 759
Cdd:TIGR02168 464 EELREELEEAEQALDAAERELAQLQARLDSLERLQEnlEGFSEGVKALLKNQSGLSGIlgvlsELISVDEGYEAAI--EA 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 760 TKEEELNAIRTENSSLTKE-VQDLKAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKT-------- 830
Cdd:TIGR02168 542 ALGGRLQAVVVENLNAAKKaIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKlrkalsyl 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 831 ------VQDLKQEIKALKE--------------------------EIGNVQLEKAQQLS-ITSKVQELQNLLKGKEEQMN 877
Cdd:TIGR02168 622 lggvlvVDDLDNALELAKKlrpgyrivtldgdlvrpggvitggsaKTNSSILERRREIEeLEEKIEELEEKIAELEKALA 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 878 TMKAVLEEKEKDLANTGKWLQDLQ----EENESLKAHVQEVAQHNLKEASSASQFEELEIVLKEKENELKRLEAMLKERE 953
Cdd:TIGR02168 702 ELRKELEELEEELEQLRKELEELSrqisALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE 781
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 954 SDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNERQ 1033
Cdd:TIGR02168 782 AEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI 861
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1034 QQVEAVELEAKEVLKKLFPKVSVpSNLSYGEWLHGFEKKakecmagtsgSEEVKVLEHKLKEADEMHTLLQLECEKYKSV 1113
Cdd:TIGR02168 862 EELEELIEELESELEALLNERAS-LEEALALLRSELEEL----------SEELRELESKRSELRRELEELREKLAQLELR 930
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1114 LAETEGILQKLQrsvEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRSENKDIE--NLRREREHLEMELEKAEMer 1191
Cdd:TIGR02168 931 LEGLEVRIDNLQ---ERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGpvNLAAIEEYEELKERYDFL-- 1005
|
810 820
....*....|....*....|....*...
gi 929653747 1192 STYVTEVRELKAQLNETLTKLRTEQNER 1219
Cdd:TIGR02168 1006 TAQKEDLTEAKETLEEAIEEIDREARER 1033
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
398-947 |
5.58e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.28 E-value: 5.58e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 398 YQETQQMQMKFQQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQsAELNKLRQDYARLVNELTEKTGKLQQEEVQKK 477
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELE-LELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 478 NAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDL---QSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLM 554
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELeeaEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 555 ESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEKDKQIKQTEDSLASERDRLTSKE 634
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE---EEEEEEALEEAAEEEAELEEEEEALLELLAELL 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 635 EELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKI--RLLEEQLQHEISNKMEEFK---------IL 703
Cdd:COG1196 470 EEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAglRGLAGAVAVLIGVEAAYEAaleaalaaaLQ 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 704 NDQNKALKSEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRT-ENSSLTKEVQDL 782
Cdd:COG1196 550 NIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYvLGDTLLGRTLVA 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 783 KAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEKAQQlsitskv 862
Cdd:COG1196 630 ARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAE------- 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 863 QELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENEslkahvQEVAQHNLKEASSASQFEELEIVLKEKENEL 942
Cdd:COG1196 703 EEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEE------ELLEEEALEELPEPPDLEELERELERLEREI 776
|
....*
gi 929653747 943 KRLEA 947
Cdd:COG1196 777 EALGP 781
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
679-1300 |
7.42e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 76.63 E-value: 7.42e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 679 DDKIRLLEEQLQH--EISNKMEEFKILNDQNKALKSEVQKLQtlvseqpnkdvVEQMEKCIQEKDEKLKTVEELLETGLI 756
Cdd:TIGR02168 192 EDILNELERQLKSleRQAEKAERYKELKAELRELELALLVLR-----------LEELREELEELQEELKEAEEELEELTA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 757 QVATKEEELNAIRTENSSLTKEVQDLKAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQ 836
Cdd:TIGR02168 261 ELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELA 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 837 EIKALKEEI-GNVQLEKAQQLSITSKVQELQNLLKGKEEQMNTMK---AVLEEKEKDLANT---------------GKWL 897
Cdd:TIGR02168 341 ELEEKLEELkEELESLEAELEELEAELEELESRLEELEEQLETLRskvAQLELQIASLNNEierlearlerledrrERLQ 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 898 QDLQEENESL-----KAHVQEVAQHNLKEASSASQFEELEIVLKEKENELKRLEAMLKERESDL---SSKTQLLQDVQDE 969
Cdd:TIGR02168 421 QEIEELLKKLeeaelKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELaqlQARLDSLERLQEN 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 970 NKLFKSQIEQLKQQNYQQASSFPPHEELLKVISEREKEISG---------LWNELDSLKDAVEHQRKKNNERQQQVEAVE 1040
Cdd:TIGR02168 501 LEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAalggrlqavVVENLNAAKKAIAFLKQNELGRVTFLPLDS 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1041 LEAKEVL-KKLFPKVSVPSNLSYGEWLHGFEKKAKECMAGTSG----SEEVKVLEHKLKEADEMHTLLQLECE----KYK 1111
Cdd:TIGR02168 581 IKGTEIQgNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGgvlvVDDLDNALELAKKLRPGYRIVTLDGDlvrpGGV 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1112 SVLAETEGILQKLQRSVEQEENKwkvkvdeshKTIKQMQSSFTSSEQELERLRSENKDIEN----LRREREHLEMELEKA 1187
Cdd:TIGR02168 661 ITGGSAKTNSSILERRREIEELE---------EKIEELEEKIAELEKALAELRKELEELEEeleqLRKELEELSRQISAL 731
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1188 EMERSTYVTEVRELKAQLNETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKIVKAAGDTTVIENSDVSPETESSEKETM 1267
Cdd:TIGR02168 732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE 811
|
650 660 670
....*....|....*....|....*....|...
gi 929653747 1268 SVSLNQTVTQLQQLLQAVNQQLTKEKEHYQVLE 1300
Cdd:TIGR02168 812 LTLLNEEAANLRERLESLERRIAATERRLEDLE 844
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
555-1300 |
1.33e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.78 E-value: 1.33e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 555 ESEQKRVNKEESLQmQVQDILE---------QNEALKAQIQQFHSQIAAQTSASVLA---EELHKVIAEKDKQIKQTEDS 622
Cdd:TIGR02168 176 ETERKLERTRENLD-RLEDILNelerqlkslERQAEKAERYKELKAELRELELALLVlrlEELREELEELQEELKEAEEE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 623 LASERDRLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQHEISNKMEEFKI 702
Cdd:TIGR02168 255 LEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 703 LNDQNKALKSEVQKLQTLVSEQPNKdvVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDL 782
Cdd:TIGR02168 335 LAEELAELEEKLEELKEELESLEAE--LEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERL 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 783 KAKQNDQVSFASLVEE--LKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIgnvQLEKAQQLSITS 860
Cdd:TIGR02168 413 EDRRERLQQEIEELLKklEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQAL---DAAERELAQLQA 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 861 KVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENE-------SLKAHVQEVAQHNLKEASSASQFEE--- 930
Cdd:TIGR02168 490 RLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGyeaaieaALGGRLQAVVVENLNAAKKAIAFLKqne 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 931 -------LEIVLKEKENELKRLEaMLKERESDLSSKTQLLQDVQDENKLF-------------KSQIEQLKQQNYQQA-- 988
Cdd:TIGR02168 570 lgrvtflPLDSIKGTEIQGNDRE-ILKNIEGFLGVAKDLVKFDPKLRKALsyllggvlvvddlDNALELAKKLRPGYRiv 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 989 -----------SSFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNERQQQVEAVELEAKEVLKKLFPKVSVP 1057
Cdd:TIGR02168 649 tldgdlvrpggVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQI 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1058 SNLSYGewLHGFEKKAKECmagtsgSEEVKVLEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQ---EENK 1134
Cdd:TIGR02168 729 SALRKD--LARLEAEVEQL------EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQlkeELKA 800
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1135 WKVKVDESHKTIKQMQSSFTSSEQELERLRsenKDIENLRREREHLEMELEKAEMERSTYVTEVRELKAQLNETLTKLRT 1214
Cdd:TIGR02168 801 LREALDELRAELTLLNEEAANLRERLESLE---RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEA 877
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1215 EQNERQKVAGDLHKAQQSLELIQSKIVKAAGDTTVIENsdvspetESSEKETMsvsLNQTVTQLQQLLQAVNQQLTKEKE 1294
Cdd:TIGR02168 878 LLNERASLEEALALLRSELEELSEELRELESKRSELRR-------ELEELREK---LAQLELRLEGLEVRIDNLQERLSE 947
|
....*.
gi 929653747 1295 HYQVLE 1300
Cdd:TIGR02168 948 EYSLTL 953
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
326-1023 |
3.85e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.24 E-value: 3.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 326 ELTTLIHQLQEKDKLLAAVKEDAAATKDRCKQLTQEMmtekERSNVVITRMKDRIGTLEKEHNVFQNKIHVSYQETQQMQ 405
Cdd:TIGR02168 324 QLEELESKLDELAEELAELEEKLEELKEELESLEAEL----EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLN 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 406 MKFQqvreQMEAEIAHLKQENGILRdavSNTTNQLESKQSAELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAATQ 485
Cdd:TIGR02168 400 NEIE----RLEARLERLEDRRERLQ---QEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEE 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 486 LKVQLQEAERRWEEVQSyirkRTAEHEAAQQDLQSKFVAKENEVQSLhSKLTDTLvskqqleQRLMQLMESEQK-RVNKE 564
Cdd:TIGR02168 473 AEQALDAAERELAQLQA----RLDSLERLQENLEGFSEGVKALLKNQ-SGLSGIL-------GVLSELISVDEGyEAAIE 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 565 ESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSA-SVLAEELHKVIAEKDKQIKQTEDSLASERDRLTSKEEELKDiqNM 643
Cdd:TIGR02168 541 AALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTfLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRK--AL 618
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 644 NFLL-----------KAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQHEISNKMEEFKILNDQNKALKS 712
Cdd:TIGR02168 619 SYLLggvlvvddldnALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEK 698
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 713 EVQKLQTLvseqpnkdvVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKqndqvsf 792
Cdd:TIGR02168 699 ALAELRKE---------LEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE------- 762
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 793 aslVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEKAQQlsiTSKVQELQNLLKGK 872
Cdd:TIGR02168 763 ---IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL---RERLESLERRIAAT 836
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 873 EEQMNTMKAVLEEKEKDLANTGKWLQDLQEE----NESLKAHVQEVAQHNLKEASSASQFEELEIVLKEKENELKRLEAM 948
Cdd:TIGR02168 837 ERRLEDLEEQIEELSEDIESLAAEIEELEELieelESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRE 916
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 929653747 949 LKEResdlssKTQLLQDVQDENKLfKSQIEQLKQQNYQQASSfpPHEELLKVISEREKEISGLWNELDSLKDAVE 1023
Cdd:TIGR02168 917 LEEL------REKLAQLELRLEGL-EVRIDNLQERLSEEYSL--TLEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| Rib_recp_KP_reg |
pfam05104 |
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ... |
29-160 |
5.11e-12 |
|
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.
Pssm-ID: 461548 [Multi-domain] Cd Length: 140 Bit Score: 64.76 E-value: 5.11e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 29 MKETLYDEVLAKQKREQKLIPTKTDKKKAEKKKNKKK------EIQNGNLHESD----SESVPRDFKLSDALAVEDDQVA 98
Cdd:pfam05104 1 MKETSYEEALAKQRRELKKTPTEKEKKKKEKKKEKKKkskkkeEKPNGKLPESEqadeSEEEPREFKTPDEAPSAALEPE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 929653747 99 PVPlnVVETSSSVRERKKKEKKQKPVLEEQVIKESDASKIPGKKVEPVPVTKQPTPPSEAAA 160
Cdd:pfam05104 81 PVP--TPVPAPVEPEPAPPSESPAPSPKEKKKKEKKSAKVEPAETPEAVQPKPALEKEEPPA 140
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
442-907 |
1.59e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 68.89 E-value: 1.59e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 442 SKQSAELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTaEHEAAQQDLQSK 521
Cdd:TIGR04523 148 KKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNK-SLESQISELKKQ 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 522 FVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAA--QTSAS 599
Cdd:TIGR04523 227 NNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDlnNQKEQ 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 600 VLAEELHKVIAEKDKQIKQTEDSLA-------SERDRLTSKEEELKDIQNMNFLLKAE-------VQKLQALANEQAAAA 665
Cdd:TIGR04523 307 DWNKELKSELKNQEKKLEEIQNQISqnnkiisQLNEQISQLKKELTNSESENSEKQREleekqneIEKLKKENQSYKQEI 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 666 HELEKMQQSVYVKDDKIRLLEEQLQHEISNKMEEFKILNDQNKALKSEVQKLQTLVSEQPNKDVV------------EQM 733
Cdd:TIGR04523 387 KNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVkeliiknldntrESL 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 734 EKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNdqvSFASLVEELKKVIHEKDGKIKSV 813
Cdd:TIGR04523 467 ETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKIS---SLKEKIEKLESEKKEKESKISDL 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 814 EE--LLEAELLKVANKEKTVQDLKQEIKALKEEignvqlekaqQLSITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLA 891
Cdd:TIGR04523 544 EDelNKDDFELKKENLEKEIDEKNKEIEELKQT----------QKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKIS 613
|
490
....*....|....*.
gi 929653747 892 NTGKWLQDLQEENESL 907
Cdd:TIGR04523 614 SLEKELEKAKKENEKL 629
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
452-1147 |
1.68e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 69.40 E-value: 1.68e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 452 RQDYARLVNELTEKTGKLQQEEVQKknAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQS 531
Cdd:PTZ00121 1165 KAEEARKAEDAKKAEAARKAEEVRK--AEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEA 1242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 532 LHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESlqMQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEElhkviAE 611
Cdd:PTZ00121 1243 KKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEA--RKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEE-----AK 1315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 612 KDKQIKQTEDSLASERDRLTSKEEELKDIQNMNfLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQH 691
Cdd:PTZ00121 1316 KADEAKKKAEEAKKKADAAKKKAEEAKKAAEAA-KAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD 1394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 692 EISNKMEEFKILNDQNKALKSEVQKLQTLVSEQPNKDVVEQMEKCIQEK---DEKLKTVEElletgliqvATKEEELNAI 768
Cdd:PTZ00121 1395 EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAkkaDEAKKKAEE---------AKKAEEAKKK 1465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 769 RTEnsslTKEVQDLKAKQNDqvsfASLVEELKKVIHEkdGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEignv 848
Cdd:PTZ00121 1466 AEE----AKKADEAKKKAEE----AKKADEAKKKAEE--AKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE---- 1531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 849 QLEKAQQLSITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQHNLKE----ASS 924
Cdd:PTZ00121 1532 EAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEkkmkAEE 1611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 925 ASQFEELEIVLKE--KENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQQAssfpphEELLKVIS 1002
Cdd:PTZ00121 1612 AKKAEEAKIKAEElkKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKA------EEAKKAEE 1685
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1003 EREKEISGLWNELDSlKDAVEHQRKKNNERQQQVEAVELEAKevlkklfpkvsvpsnlsygewlhgfEKKAKECMAGTSG 1082
Cdd:PTZ00121 1686 DEKKAAEALKKEAEE-AKKAEELKKKEAEEKKKAEELKKAEE-------------------------ENKIKAEEAKKEA 1739
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 929653747 1083 SEEVKVLEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEENKWKVKVDESHKTIK 1147
Cdd:PTZ00121 1740 EEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIF 1804
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
757-1050 |
1.21e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.11 E-value: 1.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 757 QVATKEEELNAIRTENSSLTKEVQDLKAKqndqvsfaslVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQ 836
Cdd:COG1196 240 ELEELEAELEELEAELEELEAELAELEAE----------LEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 837 EIKALKEEIGNVQLEKAQqlsITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQ 916
Cdd:COG1196 310 RRRELEERLEELEEELAE---LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 917 HNLKEASSASQFE-ELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQQassfpphE 995
Cdd:COG1196 387 ELLEALRAAAELAaQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE-------E 459
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 929653747 996 ELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNERQQQVEAVELEAKEVLKKL 1050
Cdd:COG1196 460 ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAAL 514
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
463-1263 |
1.46e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.86 E-value: 1.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 463 TEKTGKLQQEEVQKKNAEQAATQLKVQLQEAERRWEEvqsyIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLtdtlvs 542
Cdd:TIGR02169 205 REREKAERYQALLKEKREYEGYELLKEKEALERQKEA----IERQLASLEEELEKLTEEISELEKRLEEIEQLL------ 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 543 kQQLEQRLMQLMESEQKRVNKE-ESLQMQVQDILEQNEALKAQIQQfhsqiaaqtsasvLAEELHKVIAEKDK---QIKQ 618
Cdd:TIGR02169 275 -EELNKKIKDLGEEEQLRVKEKiGELEAEIASLERSIAEKERELED-------------AEERLAKLEAEIDKllaEIEE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 619 TEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQHEISNKME 698
Cdd:TIGR02169 341 LEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 699 EFKILNDQNKALKSEVQKLQTlvseqpnkdVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKE 778
Cdd:TIGR02169 421 ELADLNAAIAGIEAKINELEE---------EKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRE 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 779 VQDLKAK----QNDQVSFASLVEELKKVIhekDGKIKSVEELLEAELLKVANKE------------KTVQDLKQEIKALK 842
Cdd:TIGR02169 492 LAEAEAQarasEERVRGGRAVEEVLKASI---QGVHGTVAQLGSVGERYATAIEvaagnrlnnvvvEDDAVAKEAIELLK 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 843 EEignvQLEKAQQLSITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKW-LQD--LQEENESLKAHVQEVAQHNL 919
Cdd:TIGR02169 569 RR----KAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYvFGDtlVVEDIEAARRLMGKYRMVTL 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 920 --------------------KEASSASQFEELEIV---LKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQ 976
Cdd:TIGR02169 645 egelfeksgamtggsraprgGILFSRSEPAELQRLrerLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKE 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 977 IEQLKQQnyqqassfppHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNERQQQVEAVELEAKEVLKKLfpkvsv 1056
Cdd:TIGR02169 725 IEQLEQE----------EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL------ 788
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1057 psnlsygewlhgfekkakecmagtsGSEEVKVLEHKLKEADEMHTllqleceKYKSVLAETEGILQKLQRSVEQEENKWK 1136
Cdd:TIGR02169 789 -------------------------SHSRIPEIQAELSKLEEEVS-------RIEARLREIEQKLNRLTLEKEYLEKEIQ 836
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1137 VKVDEshktikqmqssftssEQELERLRSENKD-IENLRREREHLEMELEKAEMERSTYVTEVRELKAQLNETLTKLRTE 1215
Cdd:TIGR02169 837 ELQEQ---------------RIDLKEQIKSIEKeIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLREL 901
|
810 820 830 840
....*....|....*....|....*....|....*....|....*...
gi 929653747 1216 QNERQKVAGDLHKAQQSLELIQSKIVKAAGDTTVIENSDVSPETESSE 1263
Cdd:TIGR02169 902 ERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEE 949
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
602-1272 |
2.07e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 65.55 E-value: 2.07e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 602 AEELHKVI-AEKDKQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQKL--QALANEQAAAAHELEKMQQSVYV- 677
Cdd:PTZ00121 1124 AEDARKAEeARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKaeAARKAEEVRKAEELRKAEDARKAe 1203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 678 ---KDDKIRLLEEQLQHEISNKMEEFK----ILNDQNKALKSEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEEL 750
Cdd:PTZ00121 1204 aarKAEEERKAEEARKAEDAKKAEAVKkaeeAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADEL 1283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 751 LETgliqvatkEEELNAIRTENSSLTKEVQDLKAKQNDqvsfASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKT 830
Cdd:PTZ00121 1284 KKA--------EEKKKADEAKKAEEKKKADEAKKKAEE----AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAE 1351
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 831 VQDLKQEIKALKEEIGNVQLEKAQ----------QLSITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDL 900
Cdd:PTZ00121 1352 AEAAADEAEAAEEKAEAAEKKKEEakkkadaakkKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKK 1431
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 901 QEENESLKAHVQEVAQHNLKEASSASQFEELEIVLKE--KENELKRlEAMLKERESDLSSKTQLLQDVQDENKlfKSQIE 978
Cdd:PTZ00121 1432 KADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEakKADEAKK-KAEEAKKADEAKKKAEEAKKKADEAK--KAAEA 1508
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 979 QLKQQNYQQASSFPPHEELLKVISER---------EKEISGLWNELDSLKDAVEHQRKKNNERQQQVEAVELEAKEVLKK 1049
Cdd:PTZ00121 1509 KKKADEAKKAEEAKKADEAKKAEEAKkadeakkaeEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKK 1588
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1050 LFPKVSVPSNLSYGEWLHGFEKKAKECMAGTSGSEEVKVLEHKLKEADEMHTLLQLECEKYKSVL-AETEGILQKLQRSV 1128
Cdd:PTZ00121 1589 AEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKkAEEENKIKAAEEAK 1668
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1129 EQEENKWKVKvdeshkTIKQMQSSFTSSEQELERLRSENKDIENLRREREHLEM---ELEKAEMERSTYVTEVRELKAQL 1205
Cdd:PTZ00121 1669 KAEEDKKKAE------EAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKkaeELKKAEEENKIKAEEAKKEAEED 1742
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 929653747 1206 NETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKIVKAAGDTTVIENSDVSPETESSEKETMSVSLN 1272
Cdd:PTZ00121 1743 KKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFAN 1809
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
534-1050 |
2.37e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.00 E-value: 2.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 534 SKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKD 613
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 614 KQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKaEVQKLQALANEQAAAAHELEKMQQSVyvkDDKIRLLEEQLQhEI 693
Cdd:PRK03918 259 EKIRELEERIEELKKEIEELEEKVKELKELKEKAE-EYIKLSEFYEEYLDELREIEKRLSRL---EEEINGIEERIK-EL 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 694 SNKMEEFKILNDQNKALKSEVQKLQTLVSE-QPNKDVVEQMEKCIQE-KDEKLKTVEELLETGLIQVATKEEELNAIRTE 771
Cdd:PRK03918 334 EEKEERLEELKKKLKELEKRLEELEERHELyEEAKAKKEELERLKKRlTGLTPEKLEKELEELEKAKEEIEEEISKITAR 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 772 NSSLTKEVQDLK--------AKQNDQVSFASLVEELKKVIHEK--------------DGKIKSVEELLEAELLKVANKEK 829
Cdd:PRK03918 414 IGELKKEIKELKkaieelkkAKGKCPVCGRELTEEHRKELLEEytaelkriekelkeIEEKERKLRKELRELEKVLKKES 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 830 TVQDLKQ---EIKALKEEIGNVQLEKAQQLSIT-SKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENE 905
Cdd:PRK03918 494 ELIKLKElaeQLKELEEKLKKYNLEELEKKAEEyEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELA 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 906 SLKAHVQEVAQHNLKEASsaSQFEELE------IVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQ 979
Cdd:PRK03918 574 ELLKELEELGFESVEELE--ERLKELEpfyneyLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEE 651
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 929653747 980 LKQQNYQQAssfppHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNERQQQVEAVElEAKEVLKKL 1050
Cdd:PRK03918 652 LEKKYSEEE-----YEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEERE-KAKKELEKL 716
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
379-1050 |
2.76e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.01 E-value: 2.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 379 RIGTLEKEHNVFQNKIHVSYQETQQMQMKFQQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQ---SAELNKLRQDY 455
Cdd:TIGR02169 231 EKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIgelEAEIASLERSI 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 456 ARLVNELTEKTGKLQQEEVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQS---KFVAKENEVQSL 532
Cdd:TIGR02169 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEvdkEFAETRDELKDY 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 533 HSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEK 612
Cdd:TIGR02169 391 REKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWK---LEQLAADLSKY 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 613 DKQIKQTEDSLASERDRLTSKEEELKDiqnmnflLKAEVQKLQALANEQAAAAHELEKMQQSVY---------------- 676
Cdd:TIGR02169 468 EQELYDLKEEYDRVEKELSKLQRELAE-------AEAQARASEERVRGGRAVEEVLKASIQGVHgtvaqlgsvgeryata 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 677 -------------VKDDKI--RLLEEQLQHEIS-------NKMEEFKILNDQnKALKSEVQKLQTLVSEQPNKD------ 728
Cdd:TIGR02169 541 ievaagnrlnnvvVEDDAVakEAIELLKRRKAGratflplNKMRDERRDLSI-LSEDGVIGFAVDLVEFDPKYEpafkyv 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 729 -----VVEQMEKC---------------IQEKD---------------------EKLKTVEELLETGLIQVATKEEELNA 767
Cdd:TIGR02169 620 fgdtlVVEDIEAArrlmgkyrmvtlegeLFEKSgamtggsraprggilfsrsepAELQRLRERLEGLKRELSSLQSELRR 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 768 IRTENSSLTKEVQDLKAK----QNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKE 843
Cdd:TIGR02169 700 IENRLDELSQELSDASRKigeiEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEE 779
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 844 EIGNVQLEKAQQL--SITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQhnlKE 921
Cdd:TIGR02169 780 ALNDLEARLSHSRipEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEK---EI 856
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 922 ASSASQFEELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLKVI 1001
Cdd:TIGR02169 857 ENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEI 936
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|...
gi 929653747 1002 SEREKEISGLWNELDSLKDaVEHQRKKNNERQQQVEAVELEA----KEVLKKL 1050
Cdd:TIGR02169 937 EDPKGEDEEIPEEELSLED-VQAELQRVEEEIRALEPVNMLAiqeyEEVLKRL 988
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
413-717 |
2.98e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.61 E-value: 2.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 413 EQMEAEIAHLKQENGILRDAVSNTTNQLESKQsAELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAATQLKVQLQE 492
Cdd:TIGR02168 687 EELEEKIAELEKALAELRKELEELEEELEQLR-KELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEE 765
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 493 AERRWEEvqsyIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQVQ 572
Cdd:TIGR02168 766 LEERLEE----AEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 573 DILEQNEALKAQIQQFHSQIAaqtSASVLAEELHKVIAEKDKQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQ 652
Cdd:TIGR02168 842 DLEEQIEELSEDIESLAAEIE---ELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELE 918
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 929653747 653 KLQALANEQAAAAHELEKMQQSV--YVKDDKIRLLEEQLQHEiSNKMEEFKILNDQNKALKSEVQKL 717
Cdd:TIGR02168 919 ELREKLAQLELRLEGLEVRIDNLqeRLSEEYSLTLEEAEALE-NKIEDDEEEARRRLKRLENKIKEL 984
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
628-1237 |
3.39e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 61.62 E-value: 3.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 628 DRLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQHEISNKMEEFKILND-Q 706
Cdd:PRK03918 158 DDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEElK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 707 NKALKSEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEELLETgLIQVATKEEELNAIRTENSSLTKEVQDLKAKQ 786
Cdd:PRK03918 238 EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKE-LKELKEKAEEYIKLSEFYEEYLDELREIEKRL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 787 NDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQdLKQEIKALKEEIGNVQLEKAQqLSITSKVQELQ 866
Cdd:PRK03918 317 SRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHE-LYEEAKAKKEELERLKKRLTG-LTPEKLEKELE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 867 NLLKGKEE------QMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQHNLKE------ASSASQFEELEIV 934
Cdd:PRK03918 395 ELEKAKEEieeeisKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEeytaelKRIEKELKEIEEK 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 935 LKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQqassfppHEELLKVISEREKEISGLWNE 1014
Cdd:PRK03918 475 ERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEE-------YEKLKEKLIKLKGEIKSLKKE 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1015 LDSLKDAvehqRKKNNERQQQVEAVELEAKEVLKKLfpkvsvpsnlsygewlhgfekkakecmaGTSGSEEVKVLEHKLK 1094
Cdd:PRK03918 548 LEKLEEL----KKKLAELEKKLDELEEELAELLKEL----------------------------EELGFESVEELEERLK 595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1095 EADEMHtllqlecEKYKSvLAETEGILQKLQRSVEQEENKwkvkVDESHKTIKQMQSSFTSSEQELERLRSE--NKDIEN 1172
Cdd:PRK03918 596 ELEPFY-------NEYLE-LKDAEKELEREEKELKKLEEE----LDKAFEELAETEKRLEELRKELEELEKKysEEEYEE 663
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 929653747 1173 LRREREHLEMELEKAEMErstyVTEVRELKAQLNETLTKLRTEQNERQKVAGDLHKAQQSLELIQ 1237
Cdd:PRK03918 664 LREEYLELSRELAGLRAE----LEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVE 724
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
356-1042 |
3.55e-09 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 61.52 E-value: 3.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 356 KQLTQEMMTEKERSNVVITRMKDRIGTLEKEHNVFQNKIHVSYQETQQMQMKFQQVREQMEAEIAHLKQENGILRDAVSN 435
Cdd:TIGR00618 165 KKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAY 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 436 TTNQLESKQSaelnklRQDYARLVNELTEKTGKLQQEEvqkknAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQ 515
Cdd:TIGR00618 245 LTQKREAQEE------QLKKQQLLKQLRARIEELRAQE-----AVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIH 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 516 QDLQSKFVAKENEVQSLHSKLTDTLVSKQQleQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQ 595
Cdd:TIGR00618 314 TELQSKMRSRAKLLMKRAAHVKQQSSIEEQ--RRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTL 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 596 TSASVLAEELHKVIAEKDKQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQKlqaLANEQAAAAHELEKMQQSV 675
Cdd:TIGR00618 392 TQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITC---TAQCEKLEKIHLQESAQSL 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 676 YVKDDKIRLLEEQLQHEISNKMEEFKILNDQN-------KALKSEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVE 748
Cdd:TIGR00618 469 KEREQQLQTKEQIHLQETRKKAVVLARLLELQeepcplcGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVY 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 749 ELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNdqvSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVaNKE 828
Cdd:TIGR00618 549 HQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIP---NLQNITVRLQDLTEKLSEAEDMLACEQHALLRKL-QPE 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 829 KTVQDLKQEIKalkeeignvQLEKAQQLSITSKVQELQNLLkgKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLK 908
Cdd:TIGR00618 625 QDLQDVRLHLQ---------QCSQELALKLTALHALQLTLT--QERVREHALSIRVLPKELLASRQLALQKMQSEKEQLT 693
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 909 AHVQEVAQHNLKeassasqFEELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQdeNKLFKSQIEQLKQQNYQQA 988
Cdd:TIGR00618 694 YWKEMLAQCQTL-------LRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSL--KELMHQARTVLKARTEAHF 764
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....
gi 929653747 989 SSFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNERQQQVEAVELE 1042
Cdd:TIGR00618 765 NNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDI 818
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
416-981 |
6.91e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 60.46 E-value: 6.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 416 EAEIAHLKQENGILRDAVSNTTNQLESKQ---SAELNKLRqdyaRLVNELTEKTGKLQQEEVQKKNAEQAATQLKVQLQE 492
Cdd:PRK03918 188 TENIEELIKEKEKELEEVLREINEISSELpelREELEKLE----KEVKELEELKEEIEELEKELESLEGSKRKLEEKIRE 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 493 AERRWEEVqsyiRKRTAEHEAAQQDLQS-KFVAKE-NEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQ 570
Cdd:PRK03918 264 LEERIEEL----KKEIEELEEKVKELKElKEKAEEyIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEER 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 571 VQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAE-KDKQIKQTEDSLASERDRLTSKEEELKDIqnmnfllKA 649
Cdd:PRK03918 340 LEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRlTGLTPEKLEKELEELEKAKEEIEEEISKI-------TA 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 650 EVQKLQALANEQAAAAHELEKMQQSVYV------KDDKIRLLEEQLQhEISNKMEEFKILNDQNKALKSEVQKLQTLVSE 723
Cdd:PRK03918 413 RIGELKKEIKELKKAIEELKKAKGKCPVcgreltEEHRKELLEEYTA-ELKRIEKELKEIEEKERKLRKELRELEKVLKK 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 724 QPNKDVVEQMEKCIQEKDEKLKTVE-ELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAkqndqvsFASLVEELKKV 802
Cdd:PRK03918 492 ESELIKLKELAEQLKELEEKLKKYNlEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE-------LKKKLAELEKK 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 803 IHEKDGKIKSVEELLEAELLKvankekTVQDLKQEIKALkEEIGNVQLEkaqQLSITSKVQELQNLLKGKEEQmntmkav 882
Cdd:PRK03918 565 LDELEEELAELLKELEELGFE------SVEELEERLKEL-EPFYNEYLE---LKDAEKELEREEKELKKLEEE------- 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 883 LEEKEKDLANTGKWLQDLQEENESLKAHVQEvaqhnlkeassaSQFEELEIVLKEKENELKRLEAMLKERESDLSSKTQL 962
Cdd:PRK03918 628 LDKAFEELAETEKRLEELRKELEELEKKYSE------------EEYEELREEYLELSRELAGLRAELEELEKRREEIKKT 695
|
570
....*....|....*....
gi 929653747 963 LQDVQDENKLFKSQIEQLK 981
Cdd:PRK03918 696 LEKLKEELEEREKAKKELE 714
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
615-1207 |
1.39e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.57 E-value: 1.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 615 QIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAaahELEKMQQSVYVKDDKIRLLEEQLQHEIS 694
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELEL---ELEEAQAEEYELLAELARLEQDIARLEE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 695 NKMEEFKILNDQNKALKSEVQKLQTLVseqpnkdvvEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSS 774
Cdd:COG1196 310 RRRELEERLEELEEELAELEEELEELE---------EELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 775 LTKEVQDLKAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEKAQ 854
Cdd:COG1196 381 LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 855 QLSitsKVQELQNLLKGKEEQMntmkAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQhnlkeassASQFEELEIV 934
Cdd:COG1196 461 LLE---LLAELLEEAALLEAAL----AELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL--------LAGLRGLAGA 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 935 LKEKENELKRLEAMLKERESDLssktqLLQDVQDENKLFKSQIEQLKQQNYQQASSFPpheeLLKVISEREKEISGLWNE 1014
Cdd:COG1196 526 VAVLIGVEAAYEAALEAALAAA-----LQNIVVEDDEVAAAAIEYLKAAKAGRATFLP----LDKIRARAALAAALARGA 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1015 LDSLKDAVEHQRKKNNERQQQVEAVELEAKEVLKKLFPKVSVPSNLSYGEWLHGFEKKAKEcMAGTSGSEEVKVLEHKLK 1094
Cdd:COG1196 597 IGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGS-AGGSLTGGSRRELLAALL 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1095 EADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEEnkwkvkvdeshktiKQMQSSFTSSEQELERLRSENKDIENLR 1174
Cdd:COG1196 676 EAEAELEELAERLAEEELELEEALLAEEEEERELAEAE--------------EERLEEELEEEALEEQLEAEREELLEEL 741
|
570 580 590
....*....|....*....|....*....|....*..
gi 929653747 1175 REREHLEMELEKAEME----RSTYVTEVRELKAQLNE 1207
Cdd:COG1196 742 LEEEELLEEEALEELPeppdLEELERELERLEREIEA 778
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
667-1019 |
1.92e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 1.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 667 ELEKMQQSVYVKDDKIRLLEEQLQheisnKMEEFKILNDQNKALKSEVQKL-QTLVSEQpnkdvVEQMEKCIQEKDEKLK 745
Cdd:TIGR02169 178 ELEEVEENIERLDLIIDEKRQQLE-----RLRREREKAERYQALLKEKREYeGYELLKE-----KEALERQKEAIERQLA 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 746 TVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKakQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVA 825
Cdd:TIGR02169 248 SLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLG--EEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLA 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 826 NKEKTVQDLKQEIKALKEEIGNVQLEKAQqlsitskvqeLQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENE 905
Cdd:TIGR02169 326 KLEAEIDKLLAEIEELEREIEEERKRRDK----------LTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 906 SLKAHV------------------QEVAQHNLKEASSASQFEELEIVLKEKENELKRLE-------AMLKERESDLSSKT 960
Cdd:TIGR02169 396 KLKREInelkreldrlqeelqrlsEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEwkleqlaADLSKYEQELYDLK 475
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 929653747 961 QLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLKVISEREKEISGLWNELDSLK 1019
Cdd:TIGR02169 476 EEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVG 534
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
593-983 |
4.79e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 4.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 593 AAQTSASVLAEElhKVIAEKDKQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQ 672
Cdd:TIGR02168 665 SAKTNSSILERR--REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 673 QSVYVKDDKIRLLEEQLQHEISNKMEEFKILNDQNKALKSEVQKLQTLVSE-----QPNKDVVEQMEKCIQEKDEKLKTV 747
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQlkeelKALREALDELRAELTLLNEEAANL 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 748 EELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQND-QVSFASLVEELKKVIHEKDGK---IKSVEELLEAELLK 823
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEElEELIEELESELEALLNERASLeeaLALLRSELEELSEE 902
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 824 VANKEKTVQDLKQEIKALKEEIGNVQLEKAQqlsitSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANtgkwLQDLQEE 903
Cdd:TIGR02168 903 LRELESKRSELRRELEELREKLAQLELRLEG-----LEVRIDNLQERLSEEYSLTLEEAEALENKIEDD----EEEARRR 973
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 904 NESLKAHVQEVAQHNLkeaSSASQFEELEivlkekenelKRLEAMLKERESDLSSKTQLLQDVQDENK----LFKSQIEQ 979
Cdd:TIGR02168 974 LKRLENKIKELGPVNL---AAIEEYEELK----------ERYDFLTAQKEDLTEAKETLEEAIEEIDReareRFKDTFDQ 1040
|
....
gi 929653747 980 LKQQ 983
Cdd:TIGR02168 1041 VNEN 1044
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
319-806 |
8.59e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 56.57 E-value: 8.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 319 LKKSSKGELTTLIHQLQEKDKLLAAVKEDAAATK------DRCKQLTQEMMTEKERSNVVITRMKDRIGTLEKEHNVFQN 392
Cdd:TIGR04523 167 QKEELENELNLLEKEKLNIQKNIDKIKNKLLKLElllsnlKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTT 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 393 KIHVSYQETQQMQMKFQQVREQMEAEIAHLKQENGILRDaVSNTTNQLESKQSAELNKLRQDYARLVN-ELTEKTGKLQQ 471
Cdd:TIGR04523 247 EISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKE-LEKQLNQLKSEISDLNNQKEQDWNKELKsELKNQEKKLEE 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 472 EEVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKfvakENEVQSLHSKLTDTLVSKQQLEQRLM 551
Cdd:TIGR04523 326 IQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKL----KKENQSYKQEIKNLESQINDLESKIQ 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 552 QLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIA----AQTSASVLAEELHKVIAEKDKQIKQTEDSLASER 627
Cdd:TIGR04523 402 NQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKdltnQDSVKELIIKNLDNTRESLETQLKVLSRSINKIK 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 628 DRLTSKEEELKDIQNMNFLLKAEVQKLQALANeqaaaahELEKMQQSVYVKDDKIRLLEEQLQHEISNKMEEFKILNDQN 707
Cdd:TIGR04523 482 QNLEQKQKELKSKEKELKKLNEEKKELEEKVK-------DLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFEL 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 708 K--ALKSEVQKLQTLVSEQPN-----KDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQ 780
Cdd:TIGR04523 555 KkeNLEKEIDEKNKEIEELKQtqkslKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIK 634
|
490 500
....*....|....*....|....*.
gi 929653747 781 DLKAKQNDQVSFASLVEELKKVIHEK 806
Cdd:TIGR04523 635 NIKSKKNKLKQEVKQIKETIKEIRNK 660
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
326-584 |
1.04e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.48 E-value: 1.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 326 ELTTLIHQLQEKDKLLAAVKEDAAATKDRCKQLTQEMMTEKERsnvvITRMKDRIGTLEKEHNVFQNKIHVSYQETQQMQ 405
Cdd:COG1196 268 ELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER----RRELEERLEELEEELAELEEELEELEEELEELE 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 406 MKFQQVREQMEAEIAHLKQENGILRDAVsnttnQLESKQSAELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAATQ 485
Cdd:COG1196 344 EELEEAEEELEEAEAELAEAEEALLEAE-----AELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 486 LKVQLQEAERRWEEVqsyiRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEE 565
Cdd:COG1196 419 LEEELEELEEALAEL----EEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
250
....*....|....*....
gi 929653747 566 SLQMQVQDILEQNEALKAQ 584
Cdd:COG1196 495 LLLEAEADYEGFLEGVKAA 513
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
920-1246 |
1.55e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.10 E-value: 1.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 920 KEASSASQFEELEIVLKEKENEL-----KRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQnyqqassfppH 994
Cdd:COG1196 207 RQAEKAERYRELKEELKELEAELlllklRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE----------L 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 995 EELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNERQQQVEAVELEAKEVLKKLfpkvsvpsnlsygewlHGFEKKAK 1074
Cdd:COG1196 277 EELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL----------------EELEEELE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1075 ECmagtsgSEEVKVLEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEENKwkvkVDESHKTIKQMQSSFT 1154
Cdd:COG1196 341 EL------EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA----AAELAAQLEELEEAEE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1155 SSEQELERLRSE----NKDIENLRREREHLEMELEKAEMERSTYVTEVRELKAQLNETLTKLRTEQNERQKVAGDLHKAQ 1230
Cdd:COG1196 411 ALLERLERLEEEleelEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAA 490
|
330
....*....|....*.
gi 929653747 1231 QSLELIQSKIVKAAGD 1246
Cdd:COG1196 491 ARLLLLLEAEADYEGF 506
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
357-983 |
1.70e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 55.89 E-value: 1.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 357 QLTQEMMTEKERSNVVITRMKDRIGTLEKEHnvfQNKIHVSYQetqQMQMKFQQVREQMEAEIAHLKQENGILRDAVSNT 436
Cdd:pfam15921 224 KILRELDTEISYLKGRIFPVEDQLEALKSES---QNKIELLLQ---QHQDRIEQLISEHEVEITGLTEKASSARSQANSI 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 437 TNQLESKQSAELNKlRQDYARLVNELtektgklqqeevqkknaEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQ 516
Cdd:pfam15921 298 QSQLEIIQEQARNQ-NSMYMRQLSDL-----------------ESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELT 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 517 DLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKE--------------ESLQMQVQDILEQNEALK 582
Cdd:pfam15921 360 EARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDtgnsitidhlrrelDDRNMEVQRLEALLKAMK 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 583 AQIQ-QFHSQIAAQTSASVLAEELHKVIAekdkQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEvqkLQALANEQ 661
Cdd:pfam15921 440 SECQgQMERQMAAIQGKNESLEKVSSLTA----QLESTKEMLRKVVEELTAKKMTLESSERTVSDLTAS---LQEKERAI 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 662 AAAAHELEKMQQSVYVKddkirllEEQLQHeisnkmeefkilndqnkaLKSEVQKLQTLVSEqpnkdvVEQMEKCIQEKD 741
Cdd:pfam15921 513 EATNAEITKLRSRVDLK-------LQELQH------------------LKNEGDHLRNVQTE------CEALKLQMAEKD 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 742 EKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNDqvsFASLVEELKKVIHEKDGKIKSVEELLEAEL 821
Cdd:pfam15921 562 KVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQE---FKILKDKKDAKIRELEARVSDLELEKVKLV 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 822 LKVANKEKTVQDLKQEIKALKEEIGNVQLEKAqqlSITSKVQELQNLLKGKEEQM----NTMKAVLEEKEKDLANTGKWL 897
Cdd:pfam15921 639 NAGSERLRAVKDIKQERDQLLNEVKTSRNELN---SLSEDYEVLKRNFRNKSEEMetttNKLKMQLKSAQSELEQTRNTL 715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 898 QDLqeenESLKAHVQEVAQHNLKEASSA-SQFEELEI---VLKEKENELKRLEAMLKERESDLSsktQLLQDVQDENKLF 973
Cdd:pfam15921 716 KSM----EGSDGHAMKVAMGMQKQITAKrGQIDALQSkiqFLEEAMTNANKEKHFLKEEKNKLS---QELSTVATEKNKM 788
|
650
....*....|
gi 929653747 974 KSQIEQLKQQ 983
Cdd:pfam15921 789 AGELEVLRSQ 798
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
609-1061 |
2.12e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.41 E-value: 2.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 609 IAEKDKQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKmqqsvyvKDDKIRLLEEQ 688
Cdd:TIGR04523 126 LNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQK-------NIDKIKNKLLK 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 689 LQHEISN---KMEEFKILNDQNKALKSEVQKLQTLVSEqpNKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEEL 765
Cdd:TIGR04523 199 LELLLSNlkkKIQKNKSLESQISELKKQNNQLKDNIEK--KQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKEL 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 766 NAIRTENSSLTKEVQDLKAKQND--QVSFASLVEELKKVIHEKDGKIKSVEElleaellKVANKEKTVQDLKQEIKALKE 843
Cdd:TIGR04523 277 EQNNKKIKELEKQLNQLKSEISDlnNQKEQDWNKELKSELKNQEKKLEEIQN-------QISQNNKIISQLNEQISQLKK 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 844 EIGNVQLEKAQ-QLSITSKVQELQNLLKGKEE----------QMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQ 912
Cdd:TIGR04523 350 ELTNSESENSEkQRELEEKQNEIEKLKKENQSykqeiknlesQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIE 429
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 913 EVAQHNLKEASSAS-----------QFEELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLK 981
Cdd:TIGR04523 430 RLKETIIKNNSEIKdltnqdsvkelIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELE 509
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 982 QQ----NYQQASSFPPHEELLKVISEREKEIS-----------------------GLWNELDSLKDAVEHQRKKNNERQQ 1034
Cdd:TIGR04523 510 EKvkdlTKKISSLKEKIEKLESEKKEKESKISdledelnkddfelkkenlekeidEKNKEIEELKQTQKSLKKKQEEKQE 589
|
490 500
....*....|....*....|....*..
gi 929653747 1035 QVEAVELEAKEVLKKLFPKVSVPSNLS 1061
Cdd:TIGR04523 590 LIDQKEKEKKDLIKEIEEKEKKISSLE 616
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
824-1204 |
3.29e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.07 E-value: 3.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 824 VANKEKTVQDLKQEIKALKEEIGNVQL---EKAQQLSITS----KVQELQNLLKGKEEQMNTMKAV-LEEKEKDLANTGK 895
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLiidEKRQQLERLRrereKAERYQALLKEKREYEGYELLKeKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 896 WLQDLQEENESLKAHVQEVAQhnlkeassasQFEELEIVLKEKENELKRL----EAMLKERESDLSSKTQLLQDVQDENK 971
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEK----------RLEEIEQLLEELNKKIKDLgeeeQLRVKEKIGELEAEIASLERSIAEKE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 972 lfksqiEQLKQQNYQQASSFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNERQQQVEAVELEAKEVLKKLf 1051
Cdd:TIGR02169 315 ------RELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDEL- 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1052 pkvsvpsnlsygewlhgfeKKAKEcmagtsgseEVKVLEHKLKEADEMHTLLQLECEKYKSVLAE----TEGILQKLQRS 1127
Cdd:TIGR02169 388 -------------------KDYRE---------KLEKLKREINELKRELDRLQEELQRLSEELADlnaaIAGIEAKINEL 439
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 929653747 1128 VEQEENKWKvKVDESHKTIKQMQSSFTSSEQELERLRSENKDIEnlrREREHLEMELEKAEMERSTYVTEVRELKAQ 1204
Cdd:TIGR02169 440 EEEKEDKAL-EIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVE---KELSKLQRELAEAEAQARASEERVRGGRAV 512
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
448-1275 |
3.77e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 54.74 E-value: 3.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 448 LNKLRQDYARLVNELTEKTGKLQQ-EEVQKKNAEQAATQLKVQLQEAERRwEEVQSYIRKRTAEheaAQQDLQSKFVAKE 526
Cdd:pfam15921 76 IERVLEEYSHQVKDLQRRLNESNElHEKQKFYLRQSVIDLQTKLQEMQME-RDAMADIRRRESQ---SQEDLRNQLQNTV 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 527 NEVQSLHSKLTDTLVSKQQLEQRLMQLMESEqkrvnkeESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSASvLAEELH 606
Cdd:pfam15921 152 HELEAAKCLKEDMLEDSNTQIEQLRKMMLSH-------EGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRS-LGSAIS 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 607 KVIAEKDKQIKQTEDSLASERDRLTSKEEELKDiqNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIR--- 683
Cdd:pfam15921 224 KILRELDTEISYLKGRIFPVEDQLEALKSESQN--KIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQsql 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 684 -LLEEQLQHEISNKMEEFKILNDQNKALKSEVQKlqtlvSEQPNKDVVEQMEKciqekdeklktveelletgliQVATKE 762
Cdd:pfam15921 302 eIIQEQARNQNSMYMRQLSDLESTVSQLRSELRE-----AKRMYEDKIEELEK---------------------QLVLAN 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 763 EELNAIRTENSSLTKEVQDLkakqNDQVsfaslvEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALK 842
Cdd:pfam15921 356 SELTEARTERDQFSQESGNL----DDQL------QKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRN 425
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 843 EEignvqlekaqqlsitskVQELQNLLKGKEE----QMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQHN 918
Cdd:pfam15921 426 ME-----------------VQRLEALLKAMKSecqgQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKK 488
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 919 LKEASSASQFEELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQ----------DVQDENKLFKSQ-------IEQLK 981
Cdd:pfam15921 489 MTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQhlknegdhlrNVQTECEALKLQmaekdkvIEILR 568
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 982 QQNYQQASSFPPHEELLKVI----SEREKEISGLWNELDSLKDAVEHQRKKNNERQQQVEAVELEAKEVLkklfpkvsvp 1057
Cdd:pfam15921 569 QQIENMTQLVGQHGRTAGAMqvekAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLV---------- 638
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1058 snlsygewlhgfekkakecmagTSGSEEVKVLEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEE---NK 1134
Cdd:pfam15921 639 ----------------------NAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMEtttNK 696
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1135 WKVKVDESHKTIKQMQSSFTSSE----QELERLRSENKDIENLRREREHLEMELEKAEMERSTYVTEVRELKAQLNETLT 1210
Cdd:pfam15921 697 LKMQLKSAQSELEQTRNTLKSMEgsdgHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQ 776
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 929653747 1211 KLRTEQNERQKVAGDLHKAQQSLELIQSKI--VKAAGDTTVIENSDVSPETESSEKETMSVSLNQTV 1275
Cdd:pfam15921 777 ELSTVATEKNKMAGELEVLRSQERRLKEKVanMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTL 843
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
446-769 |
4.73e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 4.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 446 AELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRK---RTAEHEAAQQDLQSKF 522
Cdd:TIGR02169 688 RELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSleqEIENVKSELKELEARI 767
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 523 VAKENEVQSLHSKLTDtlvskqqLEQRLmqLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAaqtSASVLA 602
Cdd:TIGR02169 768 EELEEDLHKLEEALND-------LEARL--SHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKE---YLEKEI 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 603 EELHKVIAEKDKQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKI 682
Cdd:TIGR02169 836 QELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKK 915
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 683 RLLEEQLQHEISNKMEEFKILNDQNKALKSEVQKLQTLVSEQPNKDVVEQ----ME----KCIQEKDEKLKTVEELLEtg 754
Cdd:TIGR02169 916 RKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEeiraLEpvnmLAIQEYEEVLKRLDELKE-- 993
|
330
....*....|....*
gi 929653747 755 liQVATKEEELNAIR 769
Cdd:TIGR02169 994 --KRAKLEEERKAIL 1006
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
829-1049 |
5.65e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 5.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 829 KTVQDLKQEIKALKEEIGNVQLEKAQQlsiTSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLK 908
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAAL---KKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 909 AHV---QEVAQHNLKEASSASQFEELEIVLKEKENE--------LKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQI 977
Cdd:COG4942 97 AELeaqKEELAELLRALYRLGRQPPLALLLSPEDFLdavrrlqyLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 929653747 978 EQLKQQNYQQassfppHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNERQQQVEAVELEAKEVLKK 1049
Cdd:COG4942 177 EALLAELEEE------RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
442-1045 |
7.09e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 53.96 E-value: 7.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 442 SKQSAELNKLRQDYARLVNELTEKTGKLQQEEVQkknAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSK 521
Cdd:pfam05483 172 KKYEYEREETRQVYMDLNNNIEKMILAFEELRVQ---AENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQ 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 522 FVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQVQDIleqnealKAQIQQ-FHSQIAAQTSASV 600
Cdd:pfam05483 249 ITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDI-------KMSLQRsMSTQKALEEDLQI 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 601 LAEELHKVIAEKDKQIKQTEDSLASERDRLTSKEEELKDIQNmnfLLKAEVQKLQALANEQAAAAHELEKmQQSVYVKDD 680
Cdd:pfam05483 322 ATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEE---LLRTEQQRLEKNEDQLKIITMELQK-KSSELEEMT 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 681 KIRLLEEQLQHEISNKMEEFKILNDQNKALKSEVQKLQTlvSEQPNKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVAT 760
Cdd:pfam05483 398 KFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKG--KEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVED 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 761 KEEELNAIRTENSSLTKEVQDLKAKQNDQVSFAS-LVEELKKviHEKDgkIKSVEELLEAELLKVANKEKTVQDLKQEIK 839
Cdd:pfam05483 476 LKTELEKEKLKNIELTAHCDKLLLENKELTQEASdMTLELKK--HQED--IINCKKQEERMLKQIENLEEKEMNLRDELE 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 840 ALKEEIGNVQLEKAQQLSITSK-VQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLK---------- 908
Cdd:pfam05483 552 SVREEFIQKGDEVKCKLDKSEEnARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKkkgsaenkql 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 909 -AHVQEVAQHNLKEASSASQFEELeIVLKEKENELKRL--EAMLKERE-----SDLSSKTQLLQDVQDENKLfKSQIEQL 980
Cdd:pfam05483 632 nAYEIKVNKLELELASAKQKFEEI-IDNYQKEIEDKKIseEKLLEEVEkakaiADEAVKLQKEIDKRCQHKI-AEMVALM 709
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 929653747 981 KQQNYQQASSFPPHEELLKVISEREKEIS----GLWNELDSLKDAVEHQRKKNNERQQQVEAVELEAKE 1045
Cdd:pfam05483 710 EKHKHQYDKIIEERDSELGLYKNKEQEQSsakaALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKE 778
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
430-1045 |
1.28e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.12 E-value: 1.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 430 RDAVSNTTNQLESKQSAE----LNKLRQdyarlvnELTEKTGKLQQEEVQKKNAEQAATQLKVQLQEAERRWEEVQsyir 505
Cdd:PRK02224 186 RGSLDQLKAQIEEKEEKDlherLNGLES-------ELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELE---- 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 506 krtaEHEAAQQDLQSKFVAKENEVQSLHSKLTDtlvskqqLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQI 585
Cdd:PRK02224 255 ----TLEAEIEDLRETIAETEREREELAEEVRD-------LRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRD 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 586 qqfhsqiaaqtsasvlaEELHKVIAEKDKQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQKLQAlaneqaaaa 665
Cdd:PRK02224 324 -----------------EELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEARE--------- 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 666 hELEKMQQSVYVKDDKIRLLEEQLqheiSNKMEEFKILNDQNKALKSEVQKLQTLVSEqpnkdvveqMEKCIQEKDEKLK 745
Cdd:PRK02224 378 -AVEDRREEIEELEEEIEELRERF----GDAPVDLGNAEDFLEELREERDELREREAE---------LEATLRTARERVE 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 746 TVEELLETGL-------IQVATKEEELNAIRTENSSLTKEVQDLKAKQNDQVSFASLVEELKKVIHEKDgkiksveelle 818
Cdd:PRK02224 444 EAEALLEAGKcpecgqpVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIE----------- 512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 819 aellKVANKEKTVQDLKQEikalKEEIGNVQLEKAQQLSitSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQ 898
Cdd:PRK02224 513 ----RLEERREDLEELIAE----RRETIEEKRERAEELR--ERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLA 582
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 899 DLQEENESLKAHVQEVAqhnlKEASSASQFEELeivlKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIE 978
Cdd:PRK02224 583 ELKERIESLERIRTLLA----AIADAEDEIERL----REKREALAELNDERRERLAEKRERKRELEAEFDEARIEEARED 654
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 979 QLKQQNYQQASSfpphEELLKVISER---EKEISGLWNELDSLKDAVEhQRKKNNERQQQVEAVELEAKE 1045
Cdd:PRK02224 655 KERAEEYLEQVE----EKLDELREERddlQAEIGAVENELEELEELRE-RREALENRVEALEALYDEAEE 719
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
797-983 |
1.61e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 1.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 797 EELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEKAQ-QLSITSKVQELQNLLKG--KE 873
Cdd:COG4942 37 AELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAElRAELEAQKEELAELLRAlyRL 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 874 EQMNTMKAVL-----EEKEKDLANTGKWLQDLQEENESLKAHVQEVAQhnlKEASSASQFEELEIVLKEKENELKRLEAM 948
Cdd:COG4942 117 GRQPPLALLLspedfLDAVRRLQYLKYLAPARREQAEELRADLAELAA---LRAELEAERAELEALLAELEEERAALEAL 193
|
170 180 190
....*....|....*....|....*....|....*
gi 929653747 949 LKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQ 983
Cdd:COG4942 194 KAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
354-982 |
1.99e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 52.36 E-value: 1.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 354 RCKQLTQEMMTEKERSNVVITRMKDRIGTLEKEHNVFQNKIHVSYQETQQMQMKFQ------------QVREQMEAEIAH 421
Cdd:TIGR00606 323 DCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLEldgfergpfserQIKNFHTLVIER 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 422 LKQENGILRDAVSNTTNQLESKQSAeLNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAATQLKVQLQEAERRWEEVq 501
Cdd:TIGR00606 403 QEDEAKTAAQLCADLQSKERLKQEQ-ADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQEL- 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 502 syirkRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEeslqMQVQDILEQNEAL 581
Cdd:TIGR00606 481 -----RKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQME----MLTKDKMDKDEQI 551
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 582 KAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQKL------- 654
Cdd:TIGR00606 552 RKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYedklfdv 631
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 655 ---QALANEQAAAAHELEKMQQSVYVKDDKIRLLE---EQLQHEISNKMEEFKILNDQNKALKSEVQKLQTLVSEQPNKd 728
Cdd:TIGR00606 632 cgsQDEESDLERLKEEIEKSSKQRAMLAGATAVYSqfiTQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDK- 710
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 729 vVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLK---AKQNDQVSFASLVEELKKVIHE 805
Cdd:TIGR00606 711 -LKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKndiEEQETLLGTIMPEEESAKVCLT 789
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 806 KDGKIKSVEELLEAELLKVANkektvqdlkqeikalkeeignvQLEKAQQLSITSKVQELQNLLKGKEEQMNTMKAVLEE 885
Cdd:TIGR00606 790 DVTIMERFQMELKDVERKIAQ----------------------QAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIEL 847
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 886 KEKdlantgkWLQDLQEENESLKAHVQEVAQHNLKEASSASQFEELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQD 965
Cdd:TIGR00606 848 NRK-------LIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEK 920
|
650
....*....|....*..
gi 929653747 966 VQDENKLFKSQIEQLKQ 982
Cdd:TIGR00606 921 DQQEKEELISSKETSNK 937
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1085-1295 |
2.32e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.25 E-value: 2.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1085 EVKVLEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLR 1164
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1165 SENKDIENLRREREHLEMELEKAEMERSTYVTEVRELKAQLNETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKIVKAA 1244
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 929653747 1245 GDTTVIENSDVSPETESSEKETMSVSLNQTVTQLQQLLQAVNQQLTKEKEH 1295
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA 443
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
509-1181 |
3.62e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.51 E-value: 3.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 509 AEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALkAQIQQF 588
Cdd:TIGR00618 194 GKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLR-ARIEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 589 HSQIAAQTSASVLAEELHKV--IAEKDKQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAH 666
Cdd:TIGR00618 273 RAQEAVLEETQERINRARKAapLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHS 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 667 ELEKMQQSVYVKDDKIRLLEEQ--LQHEISNKMEEFKILNDQNKALKSEVQKLQTLVSEQPNKDVVEQMEKciQEKDEKL 744
Cdd:TIGR00618 353 QEIHIRDAHEVATSIREISCQQhtLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQ--GQLAHAK 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 745 KTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAK--QNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELL 822
Cdd:TIGR00618 431 KQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEReqQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSC 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 823 KVANKEKT-----------VQDLKQEIKALKEEIGNV----QLEKAQQLSITSKVQELQNLLKGKEEQMNTMKAVLEEKE 887
Cdd:TIGR00618 511 IHPNPARQdidnpgpltrrMQRGEQTYAQLETSEEDVyhqlTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQ 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 888 KDLANTGKWLQDLQEENESLKAHVQ------EVAQHNLKEASSASQFEELEIVLKEKENELKRLEAMLKERESDLSSKT- 960
Cdd:TIGR00618 591 NITVRLQDLTEKLSEAEDMLACEQHallrklQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVl 670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 961 --QLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNERQQQVEA 1038
Cdd:TIGR00618 671 pkELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMH 750
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1039 velEAKEVLKKlfpkvsvpsnlSYGEWLHGFEKKAKECMAGTSGSEEVKVLEHKLKEADEMHTLLQLECEKYKSVLAETE 1118
Cdd:TIGR00618 751 ---QARTVLKA-----------RTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDE 816
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 929653747 1119 GILQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRSENKDIENLRREREHLE 1181
Cdd:TIGR00618 817 DILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLN 879
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
612-1294 |
4.35e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 51.33 E-value: 4.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 612 KDKQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIrlleEQLQH 691
Cdd:pfam01576 3 QEEEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQEL----EEILH 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 692 EISNKMEEFKilnDQNKALKSEVQKLQTLVseqpnKDVVEQMEkciQEKDEKLKTVEELLeTGLIQVATKEEELNAIRTE 771
Cdd:pfam01576 79 ELESRLEEEE---ERSQQLQNEKKKMQQHI-----QDLEEQLD---EEEAARQKLQLEKV-TTEAKIKKLEEDILLLEDQ 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 772 NSSLTKEVQDLKAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKvanKEKTVQDLKQEIKALKEEIGNVQle 851
Cdd:pfam01576 147 NSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKK---EEKGRQELEKAKRKLEGESTDLQ-- 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 852 kAQQLSITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHV-QEVAQHNLKEASSASQFEE 930
Cdd:pfam01576 222 -EQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLeSERAARNKAEKQRRDLGEE 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 931 LEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEE--------LLKVIS 1002
Cdd:pfam01576 301 LEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEqakrnkanLEKAKQ 380
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1003 EREKEISGLWNELDSL---KDAVEHQRKKN-------NERQQQVEAVELEAKEVLKKLFPKV-SVPSNLSYGEwlhgfek 1071
Cdd:pfam01576 381 ALESENAELQAELRTLqqaKQDSEHKRKKLegqlqelQARLSESERQRAELAEKLSKLQSELeSVSSLLNEAE------- 453
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1072 kakecMAGTSGSEEVKVLEHKLKEADEmhtLLQLECE---KYKSVLAETEGILQKLQRSVEQEENKWKVKVDESHKTIKQ 1148
Cdd:pfam01576 454 -----GKNIKLSKDVSSLESQLQDTQE---LLQEETRqklNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQ 525
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1149 MQSSFTSSEQELERLRSENKDIENLRREREHLEMELEkaemERSTYVTEVRELKAQLNETLTKLRTEQNERQKVAGDLHK 1228
Cdd:pfam01576 526 LSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLE----EKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEK 601
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 929653747 1229 AQQSLEliQSKIVKAAGDTTVIENSDVSpETESSEKETMSVSLNQTVTQLQQL---LQAVNQQLTKEKE 1294
Cdd:pfam01576 602 KQKKFD--QMLAEEKAISARYAEERDRA-EAEAREKETRALSLARALEEALEAkeeLERTNKQLRAEME 667
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
731-955 |
7.27e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 50.31 E-value: 7.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 731 EQMEKC--IQEKDEKLKTVEELLETGLIQVATKEEELNAIRTEN-SSLTKEVQDLKAKQNDQVSFASLVEELKKVIHEKD 807
Cdd:PRK05771 4 VRMKKVliVTLKSYKDEVLEALHELGVVHIEDLKEELSNERLRKlRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 808 GK--IKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEI--------------------------GNVQLEKAQQLSIT 859
Cdd:PRK05771 84 LEelIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIerlepwgnfdldlslllgfkyvsvfvGTVPEDKLEELKLE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 860 SKVQELQNL-------------LKGKEEQMNTMKAVLEEKEKDLANTGK---WLQDLQEENESLKAHVQEVaQHNLKEas 923
Cdd:PRK05771 164 SDVENVEYIstdkgyvyvvvvvLKELSDEVEEELKKLGFERLELEEEGTpseLIREIKEELEEIEKERESL-LEELKE-- 240
|
250 260 270
....*....|....*....|....*....|...
gi 929653747 924 SASQFEELEIVLKEK-ENELKRLEAMLKERESD 955
Cdd:PRK05771 241 LAKKYLEELLALYEYlEIELERAEALSKFLKTD 273
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
929-1049 |
1.28e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 49.39 E-value: 1.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 929 EELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQQassfppHEELLKVISEREKE- 1007
Cdd:PRK12704 71 NEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKK------EEELEELIEEQLQEl 144
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 929653747 1008 --ISGLWNE------LDSLKDAVEHqrkknnERQQQVEAVELEAKEVLKK 1049
Cdd:PRK12704 145 erISGLTAEeakeilLEKVEEEARH------EAAVLIKEIEEEAKEEADK 188
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
687-1300 |
1.41e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.63 E-value: 1.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 687 EQLQHEISNKMEEFKILND-------QNKALKSEVQKLQTLVSEQPNKDVVEQmeKCIQEKDEKLKTVEELLETGLIQVA 759
Cdd:TIGR04523 43 KTIKNELKNKEKELKNLDKnlnkdeeKINNSNNKIKILEQQIKDLNDKLKKNK--DKINKLNSDLSKINSEIKNDKEQKN 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 760 TKEEELNAIRTE----NSSLTKEVQDLKAKQNDQVSFASLVEELKKvihekdgKIKSVEELLEAELLKVANKEKTVQDLK 835
Cdd:TIGR04523 121 KLEVELNKLEKQkkenKKNIDKFLTEIKKKEKELEKLNNKYNDLKK-------QKEELENELNLLEKEKLNIQKNIDKIK 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 836 QEIKALKEEIGNVQLEKAQQLSITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEva 915
Cdd:TIGR04523 194 NKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSE-- 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 916 qhnlkeasSASQFEELEIVLKEKENELKRLEAMLKERESdlssktqllQDVQDENKLFKSQIEQLKQQNyqqassfpphE 995
Cdd:TIGR04523 272 --------KQKELEQNNKKIKELEKQLNQLKSEISDLNN---------QKEQDWNKELKSELKNQEKKL----------E 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 996 ELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNERQQQVEAVELEAKEVLKKlfpkvsvpsNLSYGEWLHGFEKKAKE 1075
Cdd:TIGR04523 325 EIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE---------NQSYKQEIKNLESQIND 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1076 CMAGTSGSEEV-KVLEHKLKEADEMHTLLQLECEKYKS---VLAETEGILQKLQRSVEQEENKWKVKVDESHKTIKQMQS 1151
Cdd:TIGR04523 396 LESKIQNQEKLnQQKDEQIKKLQQEKELLEKEIERLKEtiiKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSR 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1152 SFTSSEQELER----LRSENKDIENLRREREHLEMELEKAEMERSTYVTEVRELKAQLNETLTKLRTEQNERQKVAGDLH 1227
Cdd:TIGR04523 476 SINKIKQNLEQkqkeLKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELK 555
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 929653747 1228 KAQQSLEL--IQSKIVKAAGDTTVIENSDVSPETESSEKETMSVSLNQTVTQLQQLLQAVNQQLTKEKEHYQVLE 1300
Cdd:TIGR04523 556 KENLEKEIdeKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLS 630
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
823-1251 |
2.29e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.91 E-value: 2.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 823 KVANKEKTVQDLKQEIKALKEEIGnvqlekaqqlSITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQE 902
Cdd:PRK03918 159 DYENAYKNLGEVIKEIKRRIERLE----------KFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEK 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 903 ENESLKAHVQEVAQHNLKEASSASQFEELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKL--FKSQIEQL 980
Cdd:PRK03918 229 EVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLseFYEEYLDE 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 981 KQQNYQQASSFpphEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNERQQQVEAVElEAKEVLKKlfpkvsvpsnl 1060
Cdd:PRK03918 309 LREIEKRLSRL---EEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYE-EAKAKKEE----------- 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1061 sygewLHGFEKKAKEcmagtsgsEEVKVLEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQ-EENKWKVKV 1139
Cdd:PRK03918 374 -----LERLKKRLTG--------LTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEElKKAKGKCPV 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1140 -----DESHKtiKQMQSSFTSseqELERLRSENKDIENLRREREHLEMELEKaEMERSTYVTEVRELKAQLNETLTKLRT 1214
Cdd:PRK03918 441 cgrelTEEHR--KELLEEYTA---ELKRIEKELKEIEEKERKLRKELRELEK-VLKKESELIKLKELAEQLKELEEKLKK 514
|
410 420 430
....*....|....*....|....*....|....*..
gi 929653747 1215 EQNErqkvagDLHKAQQSLELIQSKIVKAAGDTTVIE 1251
Cdd:PRK03918 515 YNLE------ELEKKAEEYEKLKEKLIKLKGEIKSLK 545
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
826-1050 |
2.46e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 48.77 E-value: 2.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 826 NKEKTVQDLKQ----EIKALKEEIGNVQLEKAQQLSIT-----SKVQELQNLLKGKEEQMNTMK-----AVLEEKEKDLA 891
Cdd:PRK05771 17 YKDEVLEALHElgvvHIEDLKEELSNERLRKLRSLLTKlsealDKLRSYLPKLNPLREEKKKVSvksleELIKDVEEELE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 892 NTGKWLQDLQEENESLKAHVQEVaQHNLKEASSASQFEELEIVLKEKEN---ELKRLEAMLKERESDLSSKTQLLQDVQD 968
Cdd:PRK05771 97 KIEKEIKELEEEISELENEIKEL-EQEIERLEPWGNFDLDLSLLLGFKYvsvFVGTVPEDKLEELKLESDVENVEYISTD 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 969 ENKLF----------KSQIEQLKQQNYQQASsFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNERQQQVEA 1038
Cdd:PRK05771 176 KGYVYvvvvvlkelsDEVEEELKKLGFERLE-LEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYE 254
|
250
....*....|....*
gi 929653747 1039 V---ELEAKEVLKKL 1050
Cdd:PRK05771 255 YleiELERAEALSKF 269
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
399-781 |
2.61e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 48.90 E-value: 2.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 399 QETQQMQMKFQQVREQMEAEIAHLKQENGILRDAVSNttnqLESKQSAelNKLRQDYARLVNELTEKTGKLQQEEVQKKN 478
Cdd:PRK10929 61 KGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRS----VPPNMST--DALEQEILQVSSQLLEKSRQAQQEQDRARE 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 479 AEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQqdlQSKFVAKENEVQSLHSKLtdtlvskQQLEqrLMQLMESeq 558
Cdd:PRK10929 135 ISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLA---QAQLTALQAESAALKALV-------DELE--LAQLSAN-- 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 559 krvNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQ---------TSASVLAE---ELHKVIAEKDKQIKQTEDSL--- 623
Cdd:PRK10929 201 ---NRQELARLRSELAKKRSQQLDAYLQALRNQLNSQrqreaeralESTELLAEqsgDLPKSIVAQFKINRELSQALnqq 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 624 ASERDRLTSKE-----EELKDIQNMNFL----------------LKAEVQKLQalaneqaaaahELEKMQQsvyVKDDKI 682
Cdd:PRK10929 278 AQRMDLIASQQrqaasQTLQVRQALNTLreqsqwlgvsnalgeaLRAQVARLP-----------EMPKPQQ---LDTEMA 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 683 RLLEEQLQHEisnkmeefKILNDQNKALKSEVQKLQTLVSEQpnkdvveqmeKCIQekDEKLKTVEELLETGLIQVATKE 762
Cdd:PRK10929 344 QLRVQRLRYE--------DLLNKQPQLRQIRQADGQPLTAEQ----------NRIL--DAQLRTQRELLNSLLSGGDTLI 403
|
410 420
....*....|....*....|..
gi 929653747 763 EELNAIRTENSSLT---KEVQD 781
Cdd:PRK10929 404 LELTKLKVANSQLEdalKEVNE 425
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
825-953 |
3.09e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 48.24 E-value: 3.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 825 ANKEKTVQDLKQEIKALKEEIGNVQLEKaqqlsiTSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEEN 904
Cdd:PRK12704 53 AIKKEALLEAKEEIHKLRNEFEKELRER------RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQEL 126
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 929653747 905 ESLKAHVQE-VAQHN--LKEASSASQFEELEIVLKEKENELKR-LEAMLKERE 953
Cdd:PRK12704 127 EKKEEELEElIEEQLqeLERISGLTAEEAKEILLEKVEEEARHeAAVLIKEIE 179
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
411-641 |
5.00e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.70 E-value: 5.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 411 VREQMEAEIAHLKQENGILRDAVSNTTNQLESKQsAELNKLRQDyarlvNELTEKTGKLQQEEVQKKNAEQAATQLKVQL 490
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAE-AALEEFRQK-----NGLVDLSEEAKLLLQQLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 491 QEAERRWEEVQSYIRKRTAEHEAAQQDlqskfvakeNEVQSLHSKLtdtlvskQQLEQRLMQLmeseQKRVNKEESlqmQ 570
Cdd:COG3206 236 AEAEARLAALRAQLGSGPDALPELLQS---------PVIQQLRAQL-------AELEAELAEL----SARYTPNHP---D 292
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 929653747 571 VQDILEQNEALKAQIQQFHSQIAAQTSASVlaeelhKVIAEKDKQIKQTEDSLASERDRLTSKEEELKDIQ 641
Cdd:COG3206 293 VIALRAQIAALRAQLQQEAQRILASLEAEL------EALQAREASLQAQLAQLEARLAELPELEAELRRLE 357
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
316-532 |
7.52e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 7.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 316 QDALKKSSKGELTTLIHQLQEKDKLLAAVKEDAAATKDRCKQLTQEmmtekersnvvITRMKDRIGTLEKEHNVFQNKIH 395
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERR-----------IAALARRIRALEQELAALEAELA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 396 VSYQETQQMQMKFQQVREQMEAEIAHLKQENGILRDAV---------SNTTNQLESKQSAELNKLRQDYARLVNELTEKT 466
Cdd:COG4942 87 ELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALllspedfldAVRRLQYLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 929653747 467 GKLQQEEVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSL 532
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
823-1240 |
7.93e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.07 E-value: 7.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 823 KVANKEKTVQDLKQEIKALKEEIGnvQLEKAQQL-SITSKVQELQNLLKGKEEQMNTMKA---VLEEKEKDLANTGKWLQ 898
Cdd:COG4717 96 ELEELEEELEELEAELEELREELE--KLEKLLQLlPLYQELEALEAELAELPERLEELEErleELRELEEELEELEAELA 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 899 DLQEENESLKAHVQEVAQHNLKEAssASQFEELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFK---- 974
Cdd:COG4717 174 ELQEELEELLEQLSLATEEELQDL--AEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEarll 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 975 ----SQIEQLKQQNYQQASSFPPHEELLKVISerekeisGLWNELDSLKDAVEHQRKKNNERQQQVEAVELEAKEVLKKL 1050
Cdd:COG4717 252 lliaAALLALLGLGGSLLSLILTIAGVLFLVL-------GLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEEL 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1051 FPKVSVPSNLSYGEWLHGFEKkakecmagtsgSEEVKVLEHKLKEADEMHTLLQLEcEKYKSVLAET-----EGILQKLQ 1125
Cdd:COG4717 325 LAALGLPPDLSPEELLELLDR-----------IEELQELLREAEELEEELQLEELE-QEIAALLAEAgvedeEELRAALE 392
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1126 RSVEQEENKWKVKVDEShktikQMQSSFTSSEQELERLrsenkDIENLRREREHLEMELEKAEMERSTYVTEVRELKAQL 1205
Cdd:COG4717 393 QAEEYQELKEELEELEE-----QLEELLGELEELLEAL-----DEEELEEELEELEEELEELEEELEELREELAELEAEL 462
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 929653747 1206 N-----ETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKI 1240
Cdd:COG4717 463 EqleedGELAELLQELEELKAELRELAEEWAALKLALELL 502
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
836-1238 |
8.79e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 8.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 836 QEIKALKEEIGNVQLEKAQqlsitskVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENEslkahvqeva 915
Cdd:COG4717 71 KELKELEEELKEAEEKEEE-------YAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQE---------- 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 916 qhnlkeassasqFEELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQQASSFP-PH 994
Cdd:COG4717 134 ------------LEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAeEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 995 EELLKVISEREKEISGLWNELDSLKDAVE-----HQRKKNNERQQQVEAVELEAKEVLKKLFPKVSVPSNLSYGE----- 1064
Cdd:COG4717 202 EELQQRLAELEEELEEAQEELEELEEELEqleneLEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAgvlfl 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1065 ------WLHGFEKKAKECMAGTSGSEEVKVLEHKLKEADEMHTLLQL---ECEKYKSVLAETEGILQKLQRSVEQEENKW 1135
Cdd:COG4717 282 vlgllaLLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALglpPDLSPEELLELLDRIEELQELLREAEELEE 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1136 KVKVDESHKTIKQ-MQSSFTSSEQELERLRSENKDIENLRREREHLEMELEKA--EMERSTYVTEVRELKAQLNETLTKL 1212
Cdd:COG4717 362 ELQLEELEQEIAAlLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELlgELEELLEALDEEELEEELEELEEEL 441
|
410 420
....*....|....*....|....*.
gi 929653747 1213 RTEQNERQKVAGDLHKAQQSLELIQS 1238
Cdd:COG4717 442 EELEEELEELREELAELEAELEQLEE 467
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
305-1286 |
9.49e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 46.97 E-value: 9.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 305 VDLLK--EKSGVIQDALKKSSKGELTtliHQLQEKDKLLAAVKEDAAAT-KDRCKQLTQEMMTEKERSNVVITRMKDRIG 381
Cdd:TIGR01612 623 IDLKKiiENNNAYIDELAKISPYQVP---EHLKNKDKIYSTIKSELSKIyEDDIDALYNELSSIVKENAIDNTEDKAKLD 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 382 TLekehnvfQNKIHVSYQETQQMQMkfqqvrEQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDYARLVNE 461
Cdd:TIGR01612 700 DL-------KSKIDKEYDKIQNMET------ATVELHLSNIENKKNELLDIIVEIKKHIHGEINKDLNKILEDFKNKEKE 766
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 462 LTEKTGKLQQEEVQKKNAEQAATQLKVQL-----------QEAERRWEEVQSYIR----------KRTAEHEAAQQDLQS 520
Cdd:TIGR01612 767 LSNKINDYAKEKDELNKYKSKISEIKNHYndqinidnikdEDAKQNYDKSKEYIKtisikedeifKIINEMKFMKDDFLN 846
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 521 K---FVAKEN----EVQSLHSKLTDtLVSKQQLEQRLMQLMESEqKRVNKEESLqmqvqdILEQNEALKAQIQQFHSQia 593
Cdd:TIGR01612 847 KvdkFINFENnckeKIDSEHEQFAE-LTNKIKAEISDDKLNDYE-KKFNDSKSL------INEINKSIEEEYQNINTL-- 916
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 594 aqtsasvlaeelhKVIAEKDKQIKQTEDSLASERDRLTSKEEEL----KDIQNMNFLLKAEVQKLQalaNEQAAAAHELE 669
Cdd:TIGR01612 917 -------------KKVDEYIKICENTKESIEKFHNKQNILKEILnkniDTIKESNLIEKSYKDKFD---NTLIDKINELD 980
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 670 KMqqsvyvkddkirLLEEQLQHEISNKMEEFKILNDQNKALKSevQKLQTLVSE-QPNKDVVEQMEKCIQEKDEKLKTVE 748
Cdd:TIGR01612 981 KA------------FKDASLNDYEAKNNELIKYFNDLKANLGK--NKENMLYHQfDEKEKATNDIEQKIEDANKNIPNIE 1046
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 749 ELLETGLIQVAtkEEELNAIRTENSSLTKEVqdLKAKQNDQVSFASLVEELKkvIHEKDGKIKSVEELLEAELLKVANKE 828
Cdd:TIGR01612 1047 IAIHTSIYNII--DEIEKEIGKNIELLNKEI--LEEAEINITNFNEIKEKLK--HYNFDDFGKEENIKYADEINKIKDDI 1120
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 829 KTV-QDLKQEIKALKE---EIGNVQLEKAQQLSITSKVQE---LQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQ 901
Cdd:TIGR01612 1121 KNLdQKIDHHIKALEEikkKSENYIDEIKAQINDLEDVADkaiSNDDPEEIEKKIENIVTKIDKKKNIYDEIKKLLNEIA 1200
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 902 EEnESLKAHVQEVAQHNLKEASSASQ--FEELEIVLKEKENELKRLEAML------KERESDLSSKTQLLQDVQDENKLF 973
Cdd:TIGR01612 1201 EI-EKDKTSLEEVKGINLSYGKNLGKlfLEKIDEEKKKSEHMIKAMEAYIedldeiKEKSPEIENEMGIEMDIKAEMETF 1279
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 974 ------------------------KSQIEQLKQQNYQQASSFPPHEELLKVISEREK----------EISGLWN--ELDS 1017
Cdd:TIGR01612 1280 nishdddkdhhiiskkhdenisdiREKSLKIIEDFSEESDINDIKKELQKNLLDAQKhnsdinlylnEIANIYNilKLNK 1359
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1018 LKDAVEHQRKKNNERQQQVEAV--ELEAKEVLKKlfpkvSVPSNLSYGEWLHGFE-----KKAKECMAGTSGSEEVKVLE 1090
Cdd:TIGR01612 1360 IKKIIDEVKEYTKEIEENNKNIkdELDKSEKLIK-----KIKDDINLEECKSKIEstlddKDIDECIKKIKELKNHILSE 1434
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1091 HK-----LKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEE----NKWKVKVDESHKTIKQMQSSFTSSEQELE 1161
Cdd:TIGR01612 1435 ESnidtyFKNADENNENVLLLFKNIEMADNKSQHILKIKKDNATNDHdfniNELKEHIDKSKGCKDEADKNAKAIEKNKE 1514
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1162 RLRSENKDIENLRREREHLEME--LEKAEMERSTYVTEVRELKAQL----NETLTKLRTEQNERQKVAGDLHK------- 1228
Cdd:TIGR01612 1515 LFEQYKKDVTELLNKYSALAIKnkFAKTKKDSEIIIKEIKDAHKKFileaEKSEQKIKEIKKEKFRIEDDAAKndksnka 1594
|
1050 1060 1070 1080 1090 1100
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 929653747 1229 ---AQQSLELIQSKIVKAAGDTTVIenSDVSPETESSEKETMSVSLNQTVTQLQQLLQAVN 1286
Cdd:TIGR01612 1595 aidIQLSLENFENKFLKISDIKKKI--NDCLKETESIEKKISSFSIDSQDTELKENGDNLN 1653
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
730-1042 |
9.75e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 9.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 730 VEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKeVQDLKAKQND--QVSFASLVEELKKVIHEKD 807
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAER-YQALLKEKREyeGYELLKEKEALERQKEAIE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 808 GKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGnvQLEKAQQLSITSKVQELQNLLKGKEEQMNTMKAVLEEKE 887
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIK--DLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 888 KDLANTGKWLQDLQEENESLKahvQEVAQHNLKEASSASQFEELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQ 967
Cdd:TIGR02169 322 ERLAKLEAEIDKLLAEIEELE---REIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLK 398
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 929653747 968 DENKLFKSQIEQLKQQNYQQASSFPPHEELLKVISEREKEisgLWNELDSLKDAVEHQRKKNNERQQQVEAVELE 1042
Cdd:TIGR02169 399 REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINE---LEEEKEDKALEIKKQEWKLEQLAADLSKYEQE 470
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
333-891 |
1.04e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 46.76 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 333 QLQEKDKLLAAVKEDAAATKDRCKQLTQEMMTEKERSNVVITRMKDRIGTLEKEHNVFQNKIHVSYQETQQMQMKFQQVR 412
Cdd:pfam12128 277 RQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSEL 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 413 EQMEAEIAHLKQENGilrdAVSNTTNQLESKQSAELNKlrqDYARLVNEL-TEKTGKLQQEEVQKKNAEQAATQLKVQLQ 491
Cdd:pfam12128 357 ENLEERLKALTGKHQ----DVTAKYNRRRSKIKEQNNR---DIAGIKDKLaKIREARDRQLAVAEDDLQALESELREQLE 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 492 EAERRWEEVQSYIRKRTAEHE------AAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLmesEQKRVNKEE 565
Cdd:pfam12128 430 AGKLEFNEEEYRLKSRLGELKlrlnqaTATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQA---RKRRDQASE 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 566 SLQMQVQDILEQNEALKAQIQQF----HSQIA-AQTSASVLAEELHKVIAEK-----DKQIKQTEDSLASERD----RLT 631
Cdd:pfam12128 507 ALRQASRRLEERQSALDELELQLfpqaGTLLHfLRKEAPDWEQSIGKVISPEllhrtDLDPEVWDGSVGGELNlygvKLD 586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 632 SKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQHEISNKMEEFKILNDQNKALK 711
Cdd:pfam12128 587 LKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEK 666
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 712 seVQKLQTLVSEQpnKDVVEQMEKCIQEKDEKLKTVEELLEtgliqvATKEEELNAIRTENSSLTKEVQDLKAKqndqvs 791
Cdd:pfam12128 667 --DKKNKALAERK--DSANERLNSLEAQLKQLDKKHQAWLE------EQKEQKREARTEKQAYWQVVEGALDAQ------ 730
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 792 FASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEKAQQLSITSKVQELQNLLKG 871
Cdd:pfam12128 731 LALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRP 810
|
570 580
....*....|....*....|.
gi 929653747 872 K-EEQMNTMKAVLEEKEKDLA 891
Cdd:pfam12128 811 RlATQLSNIERAISELQQQLA 831
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
929-1300 |
1.27e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.47 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 929 EELEIVLKEKENELKRLEamlKEREsdlssKTQLLQDVQDENKLFKSQIEQLKQQNYQQAssfppHEELLKVISEREKEI 1008
Cdd:COG1196 189 ERLEDILGELERQLEPLE---RQAE-----KAERYRELKEELKELEAELLLLKLRELEAE-----LEELEAELEELEAEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1009 SGLWNELDSLKDAVEHQRKKNNERQQQVEAVELEAKEVLKklfpkvsvpsnlsygewlhgfekkakecmagtsgseEVKV 1088
Cdd:COG1196 256 EELEAELAELEAELEELRLELEELELELEEAQAEEYELLA------------------------------------ELAR 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1089 LEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLqrsvEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRSENK 1168
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEEL----EEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1169 DIENLRREREHLEMELEKAEMERSTYVTEVRELKAQLNETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKIVKAAGDTt 1248
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL- 454
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 929653747 1249 viensdvspETESSEKETMSVSLNQTVTQLQQLLQAVNQQLTKEKEHYQVLE 1300
Cdd:COG1196 455 ---------EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLL 497
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
727-1226 |
1.57e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 46.58 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 727 KDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLkakqNDQVSFASLVEELKKVIHEK 806
Cdd:TIGR01612 557 KKLIHEIKKELEEENEDSIHLEKEIKDLFDKYLEIDDEIIYINKLKLELKEKIKNI----SDKNEYIKKAIDLKKIIENN 632
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 807 DGKIKSVEELLEAELLK-VANKEKTVQDLKQEikalkeeignvqLEKAQQLSITSKVQELQNLLKGKEEQMNTMKAVLEE 885
Cdd:TIGR01612 633 NAYIDELAKISPYQVPEhLKNKDKIYSTIKSE------------LSKIYEDDIDALYNELSSIVKENAIDNTEDKAKLDD 700
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 886 KEKDLANTGKWLQDLqeENESLKAHVQEVaqHNLKEASSASQFEELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQD 965
Cdd:TIGR01612 701 LKSKIDKEYDKIQNM--ETATVELHLSNI--ENKKNELLDIIVEIKKHIHGEINKDLNKILEDFKNKEKELSNKINDYAK 776
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 966 VQDENKLFKSQIEQLKQQNYQQAS-----------SFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKK----NN 1030
Cdd:TIGR01612 777 EKDELNKYKSKISEIKNHYNDQINidnikdedakqNYDKSKEYIKTISIKEDEIFKIINEMKFMKDDFLNKVDKfinfEN 856
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1031 ERQQQVEAVELEAKEVLKKLFPKVSvpsnlsyGEWLHGFEKK---AKECMAGTSGSEEvkvlehklKEADEMHTLLQLec 1107
Cdd:TIGR01612 857 NCKEKIDSEHEQFAELTNKIKAEIS-------DDKLNDYEKKfndSKSLINEINKSIE--------EEYQNINTLKKV-- 919
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1108 EKYKSVLAETEGILQKLQrsveQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRSENKDienlRREREHLEMELEKA 1187
Cdd:TIGR01612 920 DEYIKICENTKESIEKFH----NKQNILKEILNKNIDTIKESNLIEKSYKDKFDNTLIDKIN----ELDKAFKDASLNDY 991
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 929653747 1188 EMERSTYVTEVRELKAQLNETLTKLRTEQ-NERQKVAGDL 1226
Cdd:TIGR01612 992 EAKNNELIKYFNDLKANLGKNKENMLYHQfDEKEKATNDI 1031
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
561-988 |
1.94e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.91 E-value: 1.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 561 VNKEESLQMQVQDILEQNEALKAQIQQF-HSQIAAQTSASvlAEELHKVIAEKDKQIKQTEDSLASERDRLTSKEEELKD 639
Cdd:COG4717 15 RDRTIEFSPGLNVIYGPNEAGKSTLLAFiRAMLLERLEKE--ADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 640 IQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQsVYVKDDKIRLLEEQLQH------EISNKMEEFKILNDQNKALKSE 713
Cdd:COG4717 93 LQEELEELEEELEELEAELEELREELEKLEKLLQ-LLPLYQELEALEAELAElperleELEERLEELRELEEELEELEAE 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 714 VQKLQTLVSEQPNkDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNDQ---- 789
Cdd:COG4717 172 LAELQEELEELLE-QLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKearl 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 790 --------VSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEKAQQLSIT-- 859
Cdd:COG4717 251 llliaaalLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALgl 330
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 860 -------------SKVQELQNLLKGKEEQMNTMKAVLEEKEK-------------DLANTGKWLQDLQEENESLKAHVQE 913
Cdd:COG4717 331 ppdlspeellellDRIEELQELLREAEELEEELQLEELEQEIaallaeagvedeeELRAALEQAEEYQELKEELEELEEQ 410
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 929653747 914 VAQHN--LKEASSASQFEELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLF--KSQIEQLKQQNYQQA 988
Cdd:COG4717 411 LEELLgeLEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAelLQELEELKAELRELA 489
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
412-621 |
2.18e-04 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 45.98 E-value: 2.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 412 REQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDY-------ARLVN-ELTEKTGKLQQEEVQKKNAEQAA 483
Cdd:NF012221 1564 KERAEADRQRLEQEKQQQLAAISGSQSQLESTDQNALETNGQAQrdaileeSRAVTkELTTLAQGLDALDSQATYAGESG 1643
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 484 TQLKVQLqeAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKlTDTLVskQQLEQRLMQLMESEQKRVNK 563
Cdd:NF012221 1644 DQWRNPF--AGGLLDRVQEQLDDAKKISGKQLADAKQRHVDNQQKVKDAVAK-SEAGV--AQGEQNQANAEQDIDDAKAD 1718
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 929653747 564 EESLQMQVqdILEQNEALKAQIQQFHS----QIAAQTSASVLAEELHKVIAEKdKQIKQTED 621
Cdd:NF012221 1719 AEKRKDDA--LAKQNEAQQAESDANAAandaQSRGEQDASAAENKANQAQADA-KGAKQDES 1777
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
603-1254 |
3.99e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.63 E-value: 3.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 603 EELHKVIAEKDKQIKQTEDSLASERDRLTSKEEELKD-----------IQNMNFLLKAEVQKLQALANEQAAAAHELEKM 671
Cdd:TIGR04523 36 KQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNsnnkikileqqIKDLNDKLKKNKDKINKLNSDLSKINSEIKND 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 672 QQSVYVKDDKIRLLEEQLQH----------EISNKMEEFKILNDQNKALKSEVQKLQT-LVSEQPNKDVVEQMEKCIQEK 740
Cdd:TIGR04523 116 KEQKNKLEVELNKLEKQKKEnkknidkfltEIKKKEKELEKLNNKYNDLKKQKEELENeLNLLEKEKLNIQKNIDKIKNK 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 741 DEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNDQVSFASLVEELKKVIHEKDGKIKsveELLEAE 820
Cdd:TIGR04523 196 LLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIK---KQLSEK 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 821 LLKVANKEKTVQDLKQEIKALKEEIGNVQLEKAQQLSitskvQELQNLLKGKEEQmntmkavLEEKEKDLANTGKWLQDL 900
Cdd:TIGR04523 273 QKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWN-----KELKSELKNQEKK-------LEEIQNQISQNNKIISQL 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 901 QEENESLKAHVQEVAQHNLKEASSASQFEELEIVLKEKENELKRLEAMLKERESDLSSKtqlLQDVQDENKLFKSQIEQL 980
Cdd:TIGR04523 341 NEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESK---IQNQEKLNQQKDEQIKKL 417
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 981 KQQNYQQASSfppHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNERQQQVEAVELEAKEVLKKLFPKVSvpsnl 1060
Cdd:TIGR04523 418 QQEKELLEKE---IERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQK----- 489
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1061 sygewlhGFEKKAKECMAGTsgsEEVKVLEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRsveqeenkwKVKVD 1140
Cdd:TIGR04523 490 -------ELKSKEKELKKLN---EEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLED---------ELNKD 550
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1141 ESHKTIKQMQSSFTSSEQELERLRSENKDIENLRREREHLEMELEKAEM----ERSTYVTEVRELKAQLNETLTKLRTEQ 1216
Cdd:TIGR04523 551 DFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKdlikEIEEKEKKISSLEKELEKAKKENEKLS 630
|
650 660 670
....*....|....*....|....*....|....*...
gi 929653747 1217 NERQKVAGDLHKAQQSLELIQSKIVKAAGDTTVIENSD 1254
Cdd:TIGR04523 631 SIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKI 668
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
920-1293 |
4.57e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 44.73 E-value: 4.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 920 KEASSASQFEELEIVLKEKENELKRLEAMLkerESDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLK 999
Cdd:pfam05557 3 ELIESKARLSQLQNEKKQMELEHKRARIEL---EKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1000 VISEREKEISGLWNELDSLK-DAVEHQRKKNNE---RQQQVEAVELEAKEVLKKLfpkvsvpsnlsygewlhgfekkakE 1075
Cdd:pfam05557 80 LKKKYLEALNKKLNEKESQLaDAREVISCLKNElseLRRQIQRAELELQSTNSEL------------------------E 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1076 CMagtsgSEEVKVLEHKLKEADEmhtlLQLECEKYKSVLAETEGILQKLQRSVEQEENkWKVKVdeshKTIKQMQSSFTS 1155
Cdd:pfam05557 136 EL-----QERLDLLKAKASEAEQ----LRQNLEKQQSSLAEAEQRIKELEFEIQSQEQ-DSEIV----KNSKSELARIPE 201
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1156 SEQELERLRSENKDIENLRREREHLEMELE--KAEMERstyVTEVRELKAQLNETLTKLRTEQNERQKVAGDLHKAQQSL 1233
Cdd:pfam05557 202 LEKELERLREHNKHLNENIENKLLLKEEVEdlKRKLER---EEKYREEAATLELEKEKLEQELQSWVKLAQDTGLNLRSP 278
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1234 ELIQSKIVKaagdttvIENSDVSPETESSEKETMSVSLNQTVTQLQQLLQAVNQQLTKEK 1293
Cdd:pfam05557 279 EDLSRRIEQ-------LQQREIVLKEENSSLTSSARQLEKARRELEQELAQYLKKIEDLN 331
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
554-895 |
4.65e-04 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 44.46 E-value: 4.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 554 MESEQKR-VNKEESLQMQVQDILEQNEALKAQIQQfHSQIAAQTSASVLAEELHKVIAEKDKQIKQTEDSLASErDRLTS 632
Cdd:PLN03229 413 VDPERKVnMKKREAVKTPVRELEGEVEKLKEQILK-AKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQ-ERLEN 490
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 633 KEEELKDI----QNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIR---LLE-----EQLQHEISNKMEEF 700
Cdd:PLN03229 491 LREEFSKAnsqdQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRakaLSEkkskaEKLKAEINKKFKEV 570
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 701 KI---LNDQNKALKSEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELnAIRTENSSLTK 777
Cdd:PLN03229 571 MDrpeIKEKMEALKAEVASSGASSGDELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDT-AEQTPPPNLQE 649
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 778 EVQDLKAKQNDQVSFASLVEELKKVIHEkdgkiksveelleaELLKVANKEKTVQ-DLKQEIKALKEEIGNVQLEKAQQL 856
Cdd:PLN03229 650 KIESLNEEINKKIERVIRSSDLKSKIEL--------------LKLEVAKASKTPDvTEKEKIEALEQQIKQKIAEALNSS 715
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 929653747 857 SITSKVQELQNLLKGKEEQMNTMKAVLEE---KEKDLANTGK 895
Cdd:PLN03229 716 ELKEKFEELEAELAAARETAAESNGSLKNdddKEEDSKEDGS 757
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
468-637 |
4.92e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.56 E-value: 4.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 468 KLQQEEVQKKNAEQAAtQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSkfvakENEVQSLHskltdtlvskQQLE 547
Cdd:PRK04863 501 LLRRLREQRHLAEQLQ-QLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDD-----EDELEQLQ----------EELE 564
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 548 QRLMQLmeSEQKRVNKEEslQMQVQDILEQneaLKAQIQQFHSQ----IAAQTSASVLAE-------------ELHKVIA 610
Cdd:PRK04863 565 ARLESL--SESVSEARER--RMALRQQLEQ---LQARIQRLAARapawLAAQDALARLREqsgeefedsqdvtEYMQQLL 637
|
170 180
....*....|....*....|....*..
gi 929653747 611 EKDKQIKQTEDSLASERDRLTSKEEEL 637
Cdd:PRK04863 638 ERERELTVERDELAARKQALDEEIERL 664
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1089-1235 |
5.86e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 5.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1089 LEHKLKEADEmhtlLQLECEKYKSVLAETEGILQKLQRsvEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRSENK 1168
Cdd:COG4913 612 LAALEAELAE----LEEELAEAEERLEALEAELDALQE--RREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSD 685
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 929653747 1169 DIENLRREREHLEMELEKAEMERSTYVTEVRELKAQLNETLTKLRTEQnERQKVAGDLHKAQQSLEL 1235
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQ-DRLEAAEDLARLELRALL 751
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
468-801 |
7.00e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 44.12 E-value: 7.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 468 KLQQEEVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLhsKLTDTLVSKQQLE 547
Cdd:PLN02939 64 KLQSNTDENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDF--QLEDLVGMIQNAE 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 548 QRLMQLmesEQKRVNKEEslqmQVQDILEQNEALKAQIQQFHSQIAAQTSASVLA--EELHKVIAEK--DKQIKQTEDSL 623
Cdd:PLN02939 142 KNILLL---NQARLQALE----DLEKILTEKEALQGKINILEMRLSETDARIKLAaqEKIHVEILEEqlEKLRNELLIRG 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 624 ASERDRLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLqheISNKMEEFKIL 703
Cdd:PLN02939 215 ATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKF---IVAQEDVSKLS 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 704 NDQNKALKSEVQKLQTLVSEQPNKdvVEQMEKCIQEKDEKLKTVEELLET--------------GLIQVATK--EEELNA 767
Cdd:PLN02939 292 PLQYDCWWEKVENLQDLLDRATNQ--VEKAALVLDQNQDLRDKVDKLEASlkeanvskfssykvELLQQKLKllEERLQA 369
|
330 340 350
....*....|....*....|....*....|....
gi 929653747 768 IRTENSSLTKEVQDLKAKQNDQVSfaSLVEELKK 801
Cdd:PLN02939 370 SDHEIHSYIQLYQESIKEFQDTLS--KLKEESKK 401
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
691-1293 |
7.13e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 44.30 E-value: 7.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 691 HEISNKMEEFKILNDQNKALKSEVQKLQTLVSeqpnKDVVEQMEKC---IQEKDE---KLKTVEELL-ETGLIQVATKEE 763
Cdd:COG5022 803 LSLLGSRKEYRSYLACIIKLQKTIKREKKLRE----TEEVEFSLKAevlIQKFGRslkAKKRFSLLKkETIYLQSAQRVE 878
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 764 ELNAIRTENSSLTKEVQDLKAKQNDQVSFASlveELKKVIhEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKE 843
Cdd:COG5022 879 LAERQLQELKIDVKSISSLKLVNLELESEII---ELKKSL-SSDLIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLP 954
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 844 EIGNVQLEKAqqlSITSKVQELQNLLKGKEE---QMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQHN-- 918
Cdd:COG5022 955 ELNKLHEVES---KLKETSEEYEDLLKKSTIlvrEGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQsa 1031
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 919 ---LKEASSASQ----FEELEIVLKEKENEL-KRLEAMLKERESDLSSKTQLLQD----------------------VQD 968
Cdd:COG5022 1032 skiISSESTELSilkpLQKLKGLLLLENNQLqARYKALKLRRENSLLDDKQLYQLestenllktinvkdlevtnrnlVKP 1111
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 969 ENKLFKSQIEQLKQQNYQQASSFPPheELLKVISEREKEISGLWNELDSLKDAVEHQRK--------KNNERQQQVEAVE 1040
Cdd:COG5022 1112 ANVLQFIVAQMIKLNLLQEISKFLS--QLVNTLEPVFQKLSVLQLELDGLFWEANLEALpspppfaaLSEKRLYQSALYD 1189
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1041 LEAK---EVLKKLFPKVSVPSNLSYGEWLHGFEKK--AKECMAGTSGSEevkvlehKLKEADEMHTLLQLECEKYKSVLA 1115
Cdd:COG5022 1190 EKSKlssSEVNDLKNELIALFSKIFSGWPRGDKLKklISEGWVPTEYST-------SLKGFNNLNKKFDTPASMSNEKLL 1262
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1116 ETEGILQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFTS---SEQELERLRSENKDIENL-----RREREHLEMELEka 1187
Cdd:COG5022 1263 SLLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRtkaSSLRWKSATEVNYNSEELddwcrEFEISDVDEELE-- 1340
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1188 EMERSTYVTEVRELKAQLNETLTKLRTEQN--ERQKVAGDLHKAQQSLEL---IQSKIV------KAAGDTTVIENSDVS 1256
Cdd:COG5022 1341 ELIQAVKVLQLLKDDLNKLDELLDACYSLNpaEIQNLKSRYDPADKENNLpkeILKKIEallikqELQLSLEGKDETEVH 1420
|
650 660 670
....*....|....*....|....*....|....*..
gi 929653747 1257 PETESSEKETMsVSLNQTVTQLQQLLQAVNQQLTKEK 1293
Cdd:COG5022 1421 LSEIFSEEKSL-ISLDRNSIYKEEVLSSLSALLTKEK 1456
|
|
| COG4487 |
COG4487 |
Uncharacterized conserved protein, contains DUF2130 domain [Function unknown]; |
863-1052 |
8.69e-04 |
|
Uncharacterized conserved protein, contains DUF2130 domain [Function unknown];
Pssm-ID: 443580 [Multi-domain] Cd Length: 425 Bit Score: 43.40 E-value: 8.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 863 QELQNLLKGKEEQMNTMKAVLEEKEKDLANT-----GKWLQDLQEENESLKAHvqEVAQHNLKEASSASQFEELEIVLKE 937
Cdd:COG4487 29 AEFEKELAERLADAAKREAALELAEAKAKAQlqeqvAEKDAEIAELRARLEAE--ERKKALAVAEEKEKELAALQEALAE 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 938 KENEL-----KRLEAMLKERESDLSSKTQLLQ---DVQDENKLFKSQIEQLKQQNYQQASSfppheelLKViSEREKEIS 1009
Cdd:COG4487 107 KDAKLaelqaKELELLKKERELEDAKREAELTvekERDEELDELKEKLKKEEEEKQLAEKS-------LKV-AEYEKQLK 178
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 929653747 1010 GLWNELDSLKDAVEHQrkknnERQQQVEAVELEAKEVLKKLFP 1052
Cdd:COG4487 179 DMQEQIEELKRKKEQG-----STQLQGEVLELEFEELLATAFP 216
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
377-556 |
9.02e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 9.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 377 KDRIGTLEKEHNVFQNKIHVSYQETQQMQMKFQQVREQMEA-------------------EIAHLKQEngilRDAVSNTT 437
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREAlqrlaeyswdeidvasaerEIAELEAE----LERLDASS 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 438 NQLESKQsAELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAATQLKVQLQEAERRWEEVQSYI---RKRTAEHEAA 514
Cdd:COG4913 685 DDLAALE-EQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALleeRFAAALGDAV 763
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 929653747 515 QQDLQSKFvakENEVQSLHSKLtdtlvskQQLEQRLMQLMES 556
Cdd:COG4913 764 ERELRENL---EERIDALRARL-------NRAEEELERAMRA 795
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
883-1294 |
1.10e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.40 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 883 LEEKEKDLAntgkwlQDLQEENESLkAHVQEVAQHNLKEASSASQFEELEIVLKEKEnelkrleAMLKERESDLSSKTQL 962
Cdd:COG3096 318 LSARESDLE------QDYQAASDHL-NLVQTALRQQEKIERYQEDLEELTERLEEQE-------EVVEEAAEQLAEAEAR 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 963 LQDVQDENKLFKSQIeqlkqQNYQQAssfppheellkviserekeisglwneLDSlkdavehQRKKNNERQQQVEAVElE 1042
Cdd:COG3096 384 LEAAEEEVDSLKSQL-----ADYQQA--------------------------LDV-------QQTRAIQYQQAVQALE-K 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1043 AKEVLKKlfPKVSvPSNLsyGEWLHGFEKKAKEcmagtsGSEEVKVLEHKLKEADEMHTllqleceKYKSVLAETEGILQ 1122
Cdd:COG3096 425 ARALCGL--PDLT-PENA--EDYLAAFRAKEQQ------ATEEVLELEQKLSVADAARR-------QFEKAYELVCKIAG 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1123 KLQRSVEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRSENKDIENLRRE-----------REHLEMELEKAEMER 1191
Cdd:COG3096 487 EVERSQAWQTARELLRRYRSQQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEfcqrigqqldaAEELEELLAELEAQL 566
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1192 ---STYVTEVRELKAQLNETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKivkaagdttviensdvspetesseketms 1268
Cdd:COG3096 567 eelEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLREQ----------------------------- 617
|
410 420
....*....|....*....|....*.
gi 929653747 1269 vsLNQTVTQLQQLLQAVNQQLTKEKE 1294
Cdd:COG3096 618 --SGEALADSQEVTAAMQQLLERERE 641
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
757-959 |
1.53e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 757 QVATKEEELNAIRTENSSLTKEVQDLKAKQNDQvsfASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQ 836
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKAL---LKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 837 EIKALKEEIGNvQLEKAQQLSITSKV-------------------QELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWL 897
Cdd:COG4942 98 ELEAQKEELAE-LLRALYRLGRQPPLalllspedfldavrrlqylKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 898 QDLQEENESLKAHVQE--------VAQHNLKEASSASQFEELEIVLKEKENELKRLEAMLKERESDLSSK 959
Cdd:COG4942 177 EALLAELEEERAALEAlkaerqklLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
737-915 |
1.64e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 1.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 737 IQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNDQvsfASLVEELKKVIHEKDGKIKSVEel 816
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRL---ELEIEEVEARIKKYEEQLGNVR-- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 817 leaellkvanKEKTVQDLKQEIKALKEEIGnvQLEKaQQLSITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTgkw 896
Cdd:COG1579 87 ----------NNKEYEALQKEIESLKRRIS--DLED-EILELMERIEELEEELAELEAELAELEAELEEKKAELDEE--- 150
|
170
....*....|....*....
gi 929653747 897 LQDLQEENESLKAHVQEVA 915
Cdd:COG1579 151 LAELEAELEELEAEREELA 169
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
723-1234 |
1.80e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.72 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 723 EQPNKDVVEQMEKCIQEKDEKLKTVEELLETgliqVATKEEELNAIRTENSSLTKEVQDLKAKQNDQVSFASLVEELKKV 802
Cdd:PRK02224 212 ESELAELDEEIERYEEQREQARETRDEADEV----LEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRER 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 803 IHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLE----KAQQLSITSKVQELQNLLKGKEEQMNT 878
Cdd:PRK02224 288 LEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAaqahNEEAESLREDADDLEERAEELREEAAE 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 879 MKAVLEEKEKDLANTGKWLQDLQEENESLKAHVqevaqhnlkeASSASQFEELEIVLKEKENELKRLEAMLKERESDLSS 958
Cdd:PRK02224 368 LESELEEAREAVEDRREEIEELEEEIEELRERF----------GDAPVDLGNAEDFLEELREERDELREREAELEATLRT 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 959 ktqlLQDVQDENKLFksqIEQLKQQNYQQASSFPPHEEllkVISEREKEISGLWNELDSLKDAVEHQRKKNNerqQQVEA 1038
Cdd:PRK02224 438 ----ARERVEEAEAL---LEAGKCPECGQPVEGSPHVE---TIEEDRERVEELEAELEDLEEEVEEVEERLE---RAEDL 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1039 VELEAKevLKKLFPKVSVPSNLsYGEWLHGFEKKAKECmagTSGSEEVKVLEHKLKEADEMHTLLQLECEKYKSVLAETE 1118
Cdd:PRK02224 505 VEAEDR--IERLEERREDLEEL-IAERRETIEEKRERA---EELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELN 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1119 GILQKLQRSVEQEEnkwkvkvdeshkTIKQMQSSFTSSEQELERLRSENKDIENLRRE-REHLEMELE-KAEMERS---T 1193
Cdd:PRK02224 579 SKLAELKERIESLE------------RIRTLLAAIADAEDEIERLREKREALAELNDErRERLAEKRErKRELEAEfdeA 646
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 929653747 1194 YVTEVRELK-------AQLNETLTKLRTEQNERQKVAGDLHKAQQSLE 1234
Cdd:PRK02224 647 RIEEAREDKeraeeylEQVEEKLDELREERDDLQAEIGAVENELEELE 694
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
409-790 |
2.18e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 2.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 409 QQVREQMEAEIAHLKQENGILRDAVSNTTNQLEskqsaeLNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAATQLKV 488
Cdd:COG4717 94 QEELEELEEELEELEAELEELREELEKLEKLLQ------LLPLYQELEALEAELAELPERLEELEERLEELRELEEELEE 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 489 QLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLmESEQKRVNKEESLQ 568
Cdd:COG4717 168 LEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQL-ENELEAAALEERLK 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 569 MQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQIKQTEDSLAS-ERDRLTSKEEELKDIQNMNFLL 647
Cdd:COG4717 247 EARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEaEELQALPALEELEEEELEELLA 326
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 648 KAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQHEISN------------------KMEEFKILNDQNKA 709
Cdd:COG4717 327 ALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAAllaeagvedeeelraaleQAEEYQELKEELEE 406
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 710 LKSEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTEN--SSLTKEVQDLKAKQN 787
Cdd:COG4717 407 LEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGelAELLQELEELKAELR 486
|
...
gi 929653747 788 DQV 790
Cdd:COG4717 487 ELA 489
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
856-970 |
2.46e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 42.38 E-value: 2.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 856 LSITSKVQELQNLLKgKEEQMNTMKAVLEeKEKDLANTGKwLQDLQEENESLKAHVQEVAQHNLKEASSASQFEELEIVL 935
Cdd:COG0542 404 MEIDSKPEELDELER-RLEQLEIEKEALK-KEQDEASFER-LAELRDELAELEEELEALKARWEAEKELIEEIQELKEEL 480
|
90 100 110
....*....|....*....|....*....|....*
gi 929653747 936 KEKENELKRLEAMLKERESDLSSKTQLLQDVQDEN 970
Cdd:COG0542 481 EQRYGKIPELEKELAELEEELAELAPLLREEVTEE 515
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
412-532 |
2.55e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 2.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 412 REQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAA-------T 484
Cdd:COG4913 304 LARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLpasaeefA 383
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 929653747 485 QLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSL 532
Cdd:COG4913 384 ALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASL 431
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
593-845 |
2.59e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 2.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 593 AAQTSASVLAEELHKVIAEKDKQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQKLQAlaneqaaaahELEKMQ 672
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQ----------ELAALE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 673 QSVYVKDDKIRLLEEQLQheisnkmEEFKILNDQNKAL--KSEVQKLQTLVSEQPNKDVVEQMekciqekdEKLKTVEEL 750
Cdd:COG4942 83 AELAELEKEIAELRAELE-------AQKEELAELLRALyrLGRQPPLALLLSPEDFLDAVRRL--------QYLKYLAPA 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 751 LETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNDQvsfaslVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKT 830
Cdd:COG4942 148 RREQAEELRADLAELAALRAELEAERAELEALLAELEEE------RAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
250
....*....|....*
gi 929653747 831 VQDLKQEIKALKEEI 845
Cdd:COG4942 222 AEELEALIARLEAEA 236
|
|
| PRK00106 |
PRK00106 |
ribonuclease Y; |
825-967 |
2.72e-03 |
|
ribonuclease Y;
Pssm-ID: 178867 [Multi-domain] Cd Length: 535 Bit Score: 41.78 E-value: 2.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 825 ANKEKTVQDLKQEIKALKEEIGNVQLEKAQQL-SITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEE 903
Cdd:PRK00106 68 ALKKELLLEAKEEARKYREEIEQEFKSERQELkQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQ 147
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 929653747 904 NESLkahvQEVAQHNLKEASSASQFEELEIVLKEKENEL--------KRLEAMLKEReSDLSSKTQLLQDVQ 967
Cdd:PRK00106 148 VEKL----EEQKKAELERVAALSQAEAREIILAETENKLtheiatriREAEREVKDR-SDKMAKDLLAQAMQ 214
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
431-641 |
2.78e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 2.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 431 DAVSNTTNQLESKQsAELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRtae 510
Cdd:COG3883 16 PQIQAKQKELSELQ-AELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGER--- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 511 heAAQQDLQSKFVAKENEVqsLHSKLTDTLVSKQQLeqrLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQfhs 590
Cdd:COG3883 92 --ARALYRSGGSVSYLDVL--LGSESFSDFLDRLSA---LSKIADADADLLEELKADKAELEAKKAELEAKLAELEA--- 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 929653747 591 qiaAQTSASVLAEELHKVIAEKDKQIKQTEDSLASERDRLTSKEEELKDIQ 641
Cdd:COG3883 162 ---LKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAE 209
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
635-1031 |
2.81e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.12 E-value: 2.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 635 EELKDIQNMNFLLKAEVQKLQALANEQAAAaheLEKMQQSVYVKDDKIRLLEEQLQHEISNKMEEFKILNDQNKALKSEV 714
Cdd:pfam10174 408 EQLRDKDKQLAGLKERVKSLQTDSSNTDTA---LTTLEEALSEKERIIERLKEQREREDRERLEELESLKKENKDLKEKV 484
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 715 QKLQTLVSEQ-----PNKDVVEQMEKCIQEKDEKLKTVEelletglIQVATKEEELNaiRTENSSLTKEVQDLKAKQNDQ 789
Cdd:pfam10174 485 SALQPELTEKessliDLKEHASSLASSGLKKDSKLKSLE-------IAVEQKKEECS--KLENQLKKAHNAEEAVRTNPE 555
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 790 VSfaslveelkkvihekdgkiksveelleaellkvankeKTVQDLKQEIKALKEEIGNVQLEKAQQLSITSKVQELQNLl 869
Cdd:pfam10174 556 IN-------------------------------------DRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKND- 597
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 870 kgKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVA---QHNLKEASSASQFEELEIVLKEKENELKRLE 946
Cdd:pfam10174 598 --KDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEArrrEDNLADNSQQLQLEELMGALEKTRQELDATK 675
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 947 AMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQqnyqqassfpphEELLKVISEREKEISGLwnELDSLKdavehqR 1026
Cdd:pfam10174 676 ARLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQ------------EALLAAISEKDANIALL--ELSSSK------K 735
|
....*
gi 929653747 1027 KKNNE 1031
Cdd:pfam10174 736 KKTQE 740
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
437-781 |
3.01e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.43 E-value: 3.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 437 TNQLESKQSAELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQ 516
Cdd:COG4372 22 TGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 517 DLQSkfvaKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQT 596
Cdd:COG4372 102 ELES----LQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALS 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 597 SA---SVLAEELHKVIAEKDKQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQ 673
Cdd:COG4372 178 EAeaeQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVIL 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 674 SVYVKDDKIRLLEEQLQHEISNKMEEFKILNDQNKALKSEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEELLET 753
Cdd:COG4372 258 KEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLA 337
|
330 340
....*....|....*....|....*...
gi 929653747 754 GLIQVATKEEELNAIRTENSSLTKEVQD 781
Cdd:COG4372 338 ELADLLQLLLVGLLDNDVLELLSKGAEA 365
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
320-509 |
3.92e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 3.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 320 KKSSKGELTTLIHQLQEKDKLLAAVKEDAAATKDRCKQLTQEMMTEKERSNVVITRMKDRIGTLEKEHNVFQNKIHVSYQ 399
Cdd:COG4942 50 EKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPE 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 400 ETQQ---MQMKFQQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQS--AELNKLRQDYARLVNELTEKTGKLQQEEV 474
Cdd:COG4942 130 DFLDavrRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAllAELEEERAALEALKAERQKLLARLEKELA 209
|
170 180 190
....*....|....*....|....*....|....*
gi 929653747 475 QKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTA 509
Cdd:COG4942 210 ELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
635-860 |
3.95e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.54 E-value: 3.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 635 EELKDIQ---NMNFLLKAEVQKLQALANEQAaaaHELEKMQQSVYVKDDKIRLLEEQLQHEISNKMEEFKILNDQNKALK 711
Cdd:PHA02562 157 EDLLDISvlsEMDKLNKDKIRELNQQIQTLD---MKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIK 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 712 SEVQKLQTLVSE--QPNKDVVEQMEKC------IQEKDEKLKTVEELLETGLI------QVATKEEELNAIRTENSSLTK 777
Cdd:PHA02562 234 AEIEELTDELLNlvMDIEDPSAALNKLntaaakIKSKIEQFQKVIKMYEKGGVcptctqQISEGPDRITKIKDKLKELQH 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 778 EVQDLKAKQNDQVSFASLVEELKKVIHE--------------KDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKE 843
Cdd:PHA02562 314 SLEKLDTAIDELEEIMDEFNEQSKKLLElknkistnkqslitLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVK 393
|
250
....*....|....*..
gi 929653747 844 EIGNVQLEKAQQLSITS 860
Cdd:PHA02562 394 TKSELVKEKYHRGIVTD 410
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
478-701 |
4.17e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 4.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 478 NAEQAATqLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQ-----SKFVAKENEVQSLHSKLtdtlvskQQLEQRLMQ 552
Cdd:COG4913 608 NRAKLAA-LEAELAELEEELAEAEERLEALEAELDALQERREalqrlAEYSWDEIDVASAEREI-------AELEAELER 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 553 LMESeqkrvnkeeslQMQVQDILEQNEALKAQIQQFHSQIaaqtsasvlaEELHKVIAEKDKQIKQTEDSLASERDRLTS 632
Cdd:COG4913 680 LDAS-----------SDDLAALEEQLEELEAELEELEEEL----------DELKGEIGRLEKELEQAEEELDELQDRLEA 738
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 929653747 633 KEEELKDIQnmNFLLKAEVQKLQALANEQAAAahelEKMQQSVYVKDDKIRLLEEQLQheisNKMEEFK 701
Cdd:COG4913 739 AEDLARLEL--RALLEERFAAALGDAVERELR----ENLEERIDALRARLNRAEEELE----RAMRAFN 797
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
601-1180 |
4.21e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.43 E-value: 4.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 601 LAEELHKVIAEKDKQIKQTEDSLASERDRLTSKEE---ELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQ---QS 674
Cdd:PRK01156 188 LEEKLKSSNLELENIKKQIADDEKSHSITLKEIERlsiEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAEsdlSM 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 675 VYVKDDKIRLLEEQLQheisnkmeefKILNDQNKALKSEVQKLQTLVSEQPN-KDVVEQMEKCIQEKDEKLKTVEELlet 753
Cdd:PRK01156 268 ELEKNNYYKELEERHM----------KIINDPVYKNRNYINDYFKYKNDIENkKQILSNIDAEINKYHAIIKKLSVL--- 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 754 gliqvATKEEELNAIRTENSSLTKEVQDLKAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQD 833
Cdd:PRK01156 335 -----QKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKK 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 834 LKQEIKA----LKEEIGNVQLEKAQQLSITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANT-GKWLQDLQEENESLK 908
Cdd:PRK01156 410 ELNEINVklqdISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHIINHyNEKKSRLEEKIREIE 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 909 AHVQEVAQHNLKEASSASQFEELEIVLKEKE-NELKRLEAMLKERESDLSSktqlLQDVQDENKLFKSQIEQLKQQNYQQ 987
Cdd:PRK01156 490 IEVKDIDEKIVDLKKRKEYLESEEINKSINEyNKIESARADLEDIKIKINE----LKDKHDKYEEIKNRYKSLKLEDLDS 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 988 AssfppHEELLKVISERekeisglwneldSLKDaVEHQRKKNNERQQQVEAVELEAKEVlkklfpKVSVPSNLSYgewlh 1067
Cdd:PRK01156 566 K-----RTSWLNALAVI------------SLID-IETNRSRSNEIKKQLNDLESRLQEI------EIGFPDDKSY----- 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1068 gFEKKAKECmagtsgSEEVKVLEHKLKEADEMHTL---LQLECEKYKSVLAETEGILQKLQ----RSVEQEEN------- 1133
Cdd:PRK01156 617 -IDKSIREI------ENEANNLNNKYNEIQENKILiekLRGKIDNYKKQIAEIDSIIPDLKeitsRINDIEDNlkksrka 689
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 929653747 1134 ---------KWKVKVDESHKTIKQMQSSFTSSEQELERLRSENKDIENLRREREHL 1180
Cdd:PRK01156 690 lddakanraRLESTIEILRTRINELSDRINDINETLESMKKIKKAIGDLKRLREAF 745
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
774-1282 |
4.36e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.43 E-value: 4.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 774 SLTKEVQDLKAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIK---ALKEEIGNVQL 850
Cdd:PRK01156 177 MLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNelsSLEDMKNRYES 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 851 EKAQQLSITSKVQELQNLLKGKEEQMN--TMKAVLEEKEK--DLANTGKWLQDLQEENESLKAHVQEVaQHNLKEASSAS 926
Cdd:PRK01156 257 EIKTAESDLSMELEKNNYYKELEERHMkiINDPVYKNRNYinDYFKYKNDIENKKQILSNIDAEINKY-HAIIKKLSVLQ 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 927 QFEELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQQAS-SFPPHEELLKVISERE 1005
Cdd:PRK01156 336 KDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKiQEIDPDAIKKELNEIN 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1006 KEISGLWNELDSLKDAVEHQRKKNNERQQQVEAVELEAKEVL--KKLFPKVSVPSNLSYGEWLHGFEKKAKECMAGTSGS 1083
Cdd:PRK01156 416 VKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVcgTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDI 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1084 EEVKVLEHKLKEADEMHTLLQLECE--KYKSVLAETEGILQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFTSSEQELE 1161
Cdd:PRK01156 496 DEKIVDLKKRKEYLESEEINKSINEynKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALA 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1162 RLrsENKDIENLRREREHLEMELEKAEMERSTYVTEVRELKAQLNETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKIV 1241
Cdd:PRK01156 576 VI--SLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKID 653
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 929653747 1242 KAAGDTTVIENSDVSPETESSEKETMSVSLNQTVTQLQQLL 1282
Cdd:PRK01156 654 NYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAK 694
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
1154-1240 |
5.94e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.84 E-value: 5.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1154 TSSEQELERLRSEnkdIENLRREREHLEMELEKAEMERstyVTEVRELKAQLNETLTKLRTEQNERQKVAGDLHKAQQSL 1233
Cdd:COG0542 407 DSKPEELDELERR---LEQLEIEKEALKKEQDEASFER---LAELRDELAELEEELEALKARWEAEKELIEEIQELKEEL 480
|
....*..
gi 929653747 1234 ELIQSKI 1240
Cdd:COG0542 481 EQRYGKI 487
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
874-1189 |
6.04e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.07 E-value: 6.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 874 EQMNTMKAVLEEKEKDlantgKWLQDLQEENEslkAHVQEvaqhnLKEASSASQFEELE---IVLKEKENELKRLEAMLK 950
Cdd:PRK05771 4 VRMKKVLIVTLKSYKD-----EVLEALHELGV---VHIED-----LKEELSNERLRKLRsllTKLSEALDKLRSYLPKLN 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 951 eresdLSSKTQLLQDVQDENKLFKSQIEQLkqqnyqqassfpphEELLKVISEREKEISGLWNELDSLKDavehqrkknn 1030
Cdd:PRK05771 71 -----PLREEKKKVSVKSLEELIKDVEEEL--------------EKIEKEIKELEEEISELENEIKELEQ---------- 121
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1031 erqqqveavELEAKEVLKKLfpkvSVP-SNLSYGEWLHGFEKKAKECMAGTSGSEEVKVLEHKLKEADEMHTLLQLeceK 1109
Cdd:PRK05771 122 ---------EIERLEPWGNF----DLDlSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVVVV---V 185
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1110 YKSVLAETEGILQKLqrSVEQEENKWKVKVDESHKTIKQMQSSFtssEQELERLRSE-----NKDIENLRREREHLEMEL 1184
Cdd:PRK05771 186 LKELSDEVEEELKKL--GFERLELEEEGTPSELIREIKEELEEI---EKERESLLEElkelaKKYLEELLALYEYLEIEL 260
|
....*
gi 929653747 1185 EKAEM 1189
Cdd:PRK05771 261 ERAEA 265
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1089-1242 |
8.95e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 8.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1089 LEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRsvEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRSEnk 1168
Cdd:COG1579 22 LEHRLKELPAELAELEDELAALEARLEAAKTELEDLEK--EIKRLELEIEEVEARIKKYEEQLGNVRNNKEYEALQKE-- 97
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 929653747 1169 dIENLRREREHLEMELEKAEMERSTYVTEVRELKAQLNETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKIVK 1242
Cdd:COG1579 98 -IESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAA 170
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
424-853 |
9.00e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 40.05 E-value: 9.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 424 QENGILRDAVSNTTNQLEskqsaELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAATQ-------LKVQLQEAERR 496
Cdd:pfam19220 3 QRNELLRVRLGEMADRLE-----DLRSLKADFSQLIEPIEAILRELPQAKSRLLELEALLAQeraaygkLRRELAGLTRR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 497 WEEVQSYIRKRTAEHEAAQQDLQSKfvakENEVQSLHSKLTDTLVSKQQLEQRLMQlmESEQKRVnkeeslqmqvqdILE 576
Cdd:pfam19220 78 LSAAEGELEELVARLAKLEAALREA----EAAKEELRIELRDKTAQAEALERQLAA--ETEQNRA------------LEE 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 577 QNEALKAQIQQfhsqiaaqtsasvlaeelhkviaeKDKQIKQTEDSLASERDRLTskeeelkdiqnmnfLLKAEVQKLQA 656
Cdd:pfam19220 140 ENKALREEAQA------------------------AEKALQRAEGELATARERLA--------------LLEQENRRLQA 181
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 657 LANEQAAAAHELEK----MQQSVYVKDDKIRLLEEQLQHEISNKMEEFKILNDQNKALKSEV----QKLQTLVSEQPNKD 728
Cdd:pfam19220 182 LSEEQAAELAELTRrlaeLETQLDATRARLRALEGQLAAEQAERERAEAQLEEAVEAHRAERaslrMKLEALTARAAATE 261
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 729 VV-EQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNDQVSFAslvEELKKVIHEKD 807
Cdd:pfam19220 262 QLlAEARNQLRDRDEAIRAAERRLKEASIERDTLERRLAGLEADLERRTQQFQEMQRARAELEERA---EMLTKALAAKD 338
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 929653747 808 GKIKSVEELLEAELLKVANKEKTV----QDLKQEIKALKEEIGNVQLEKA 853
Cdd:pfam19220 339 AALERAEERIASLSDRIAELTKRFeverAALEQANRRLKEELQRERAERA 388
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
829-1009 |
9.37e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.38 E-value: 9.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 829 KTVQDLKQEIKALKEEIGNVQLEKAQQLSITSKVQELQNLLKGKEEQMNTMKAVLEEKekDLANTGKwlQDLQEENESLK 908
Cdd:PHA02562 227 EEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKG--GVCPTCT--QQISEGPDRIT 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 909 AHVQEVA--QHNLKEASSASQFEEleivlkEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKqqnyq 986
Cdd:PHA02562 303 KIKDKLKelQHSLEKLDTAIDELE------EIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQ----- 371
|
170 180
....*....|....*....|...
gi 929653747 987 qaSSFPPHEELLKVISEREKEIS 1009
Cdd:PHA02562 372 --AEFVDNAEELAKLQDELDKIV 392
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
608-1300 |
9.39e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 40.34 E-value: 9.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 608 VIAEKDKQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKddkirLLEE 687
Cdd:pfam02463 163 AGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLK-----LNEE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 688 QLQHEISNKMEEFKILNDQNKALKSEVQKLQTlvseqpNKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNA 767
Cdd:pfam02463 238 RIDLLQELLRDEQEEIESSKQEIEKEEEKLAQ------VLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVD 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 768 IRTENSSLTKEVQDLKAKQNDQVSFASLVEELKKVIHEKDGK-IKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIG 846
Cdd:pfam02463 312 DEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAeEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAK 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 847 NVQLEKAQQLSITSKVQELQNLLKGKEEQmntMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAqhnLKEASSAS 926
Cdd:pfam02463 392 LKEEELELKSEEEKEAQLLLELARQLEDL---LKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQE---LKLLKDEL 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 927 QFEELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLKVISEREK 1006
Cdd:pfam02463 466 ELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAI 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1007 EISGLWNELDSLKDAVEHQRKKNNERQQQVEAVELEAKEVLKKLFPKVSVPSNLSYGEWLHGFEKKAKECMAGTSGSEEV 1086
Cdd:pfam02463 546 STAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVV 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1087 KVLEHKLKEADEMHTLLQLECEKYKSVlAETEGILQKLQRSVEQEENKWKVKVDESHKTIKQMQS-----SFTSSEQELE 1161
Cdd:pfam02463 626 EGILKDTELTKLKESAKAKESGLRKGV-SLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELakeeiLRRQLEIKKK 704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 1162 RLRSENKDIENLRREREHLEMELEKAEMERSTYVTEVRELKAQLNETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKIV 1241
Cdd:pfam02463 705 EQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTE 784
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*....
gi 929653747 1242 KAAGDTTVIENSDVSPETESSEKETMSVSLNQTVTQLQQLLQAVNQQLTKEKEHYQVLE 1300
Cdd:pfam02463 785 KLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELK 843
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
506-727 |
9.90e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 9.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 506 KRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQI 585
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 586 QQFHSQIAAQTSASVLAEELHKV--------IAEKDKQIKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQKLQAL 657
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLalllspedFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929653747 658 ANEQAAAAHELEKMQQSVyvkddkiRLLEEQLQHEISNKMEEFKILNDQNKALKSEVQKLQTLVSEQPNK 727
Cdd:COG4942 180 LAELEEERAALEALKAER-------QKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| |
