NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|3402485|dbj|BAA32209|]
View 

MRJ [Homo sapiens]

Protein Classification

molecular chaperone DnaJ( domain architecture ID 1000952)

molecular chaperone DnaJ, part of the DnaK-DnaJ-GrpE system, prevents the aggregation of unfolded substrate and acts primarily by stimulating the ATPase activity of Hsp70

CATH:  2.10.230.10
Gene Ontology:  GO:0051082|GO:0005524|GO:0009408|GO:0006457
PubMed:  8016869|15063739|29290615
SCOP:  4003813|4002149

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK10767 super family cl35946
chaperone protein DnaJ; Provisional
 3-107 2.45e-37

chaperone protein DnaJ; Provisional


The actual alignment was detected with superfamily member PRK10767:

Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 134.12  E-value: 2.45e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485     3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKRDIYDKYgkeglnggggggSH 82
Cdd:PRK10767   5 DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDK-EAEEKFKEIKEAYEVLSDPQKRAAYDQY------------GH 71

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 3402485    83 -----------FDSPFEFGFTFrnpDDVFREFFGGR 107
Cdd:PRK10767  72 aafeqggggggFGGGGGFGDIF---GDIFGDIFGGG 104
 
Name Accession Description Interval E-value
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 3-107 2.45e-37

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 134.12  E-value: 2.45e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485     3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKRDIYDKYgkeglnggggggSH 82
Cdd:PRK10767   5 DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDK-EAEEKFKEIKEAYEVLSDPQKRAAYDQY------------GH 71

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 3402485    83 -----------FDSPFEFGFTFrnpDDVFREFFGGR 107
Cdd:PRK10767  72 aafeqggggggFGGGGGFGDIF---GDIFGDIFGGG 104
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 3-66 6.93e-37

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 124.12  E-value: 6.93e-37
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 3402485      3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKRDIYD 66
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDP-EAEEKFKEINEAYEVLSDPEKRAIYD 63
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 3-68 9.91e-37

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 126.36  E-value: 9.91e-37
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 3402485    3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKRDIYDKY 68
Cdd:COG0484   1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPGDP-EAEEKFKEINEAYEVLSDPEKRAAYDRF 65
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 3-106 1.72e-36

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 131.57  E-value: 1.72e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485      3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPEnkEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGGSH 82
Cdd:TIGR02349   1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD--KEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGG 78

                          90       100
                  ....*....|....*....|....
gi 3402485     83 FDSPFEFGFtFRNPDDVFREFFGG 106
Cdd:TIGR02349  79 GFNGFDIGF-FGDFGDIFGDFFGG 101
DnaJ smart00271
DnaJ molecular chaperone homology domain;
2-61 8.68e-32

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 110.79  E-value: 8.68e-32
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485       2 VDYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKK 61
Cdd:smart00271   1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 3-58 7.28e-29

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 103.39  E-value: 7.28e-29
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 3402485    3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENkEEAERKFKQVAEAYEVLSD 58
Cdd:cd06257   1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD-PEAEEKFKEINEAYEVLSD 55
terminal_TopJ NF037946
terminal organelle assembly protein TopJ;
3-151 4.93e-26

terminal organelle assembly protein TopJ;


Pssm-ID: 468284 [Multi-domain]  Cd Length: 440  Bit Score: 104.90  E-value: 4.93e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485     3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPEnkEEAERKFKQVAEAYEVLSDAKKRDIYDKYgkeglnggggggSH 82
Cdd:NF037946   6 DYYEVLGVDRDADDQEIKKAFRKLAKKYHPDRNKA--PDAAEIFAEINEAYEVLSNPEKRANYDKY------------GH 71

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 3402485    83 FDSPFEFGFTFrNPDDVFREFFGG----------RDPFSFDFFEDPFEDFFGNRRGPRGSRSRGTGSFFSAFSGFPSFG 151
Cdd:NF037946  72 DGVDGEGGFGF-DAFDVFSSFFETinksgaflddSVDESVSADDDLDRLFDDSKEPSFTSGLDEIVQFWEAFIGNPDYG 149
 
Name Accession Description Interval E-value
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 3-107 2.45e-37

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 134.12  E-value: 2.45e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485     3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKRDIYDKYgkeglnggggggSH 82
Cdd:PRK10767   5 DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDK-EAEEKFKEIKEAYEVLSDPQKRAAYDQY------------GH 71

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 3402485    83 -----------FDSPFEFGFTFrnpDDVFREFFGGR 107
Cdd:PRK10767  72 aafeqggggggFGGGGGFGDIF---GDIFGDIFGGG 104
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 3-66 6.93e-37

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 124.12  E-value: 6.93e-37
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 3402485      3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKRDIYD 66
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDP-EAEEKFKEINEAYEVLSDPEKRAIYD 63
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 3-68 9.91e-37

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 126.36  E-value: 9.91e-37
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 3402485    3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKRDIYDKY 68
Cdd:COG0484   1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPGDP-EAEEKFKEINEAYEVLSDPEKRAAYDRF 65
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 3-106 1.72e-36

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 131.57  E-value: 1.72e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485      3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPEnkEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGGSH 82
Cdd:TIGR02349   1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD--KEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGG 78

                          90       100
                  ....*....|....*....|....
gi 3402485     83 FDSPFEFGFtFRNPDDVFREFFGG 106
Cdd:TIGR02349  79 GFNGFDIGF-FGDFGDIFGDFFGG 101
DnaJ smart00271
DnaJ molecular chaperone homology domain;
2-61 8.68e-32

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 110.79  E-value: 8.68e-32
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485       2 VDYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKK 61
Cdd:smart00271   1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60
PRK14294 PRK14294
chaperone protein DnaJ; Provisional
 3-105 1.04e-31

chaperone protein DnaJ; Provisional


Pssm-ID: 237664 [Multi-domain]  Cd Length: 366  Bit Score: 119.10  E-value: 1.04e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485     3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEG-LNGGGGGGS 81
Cdd:PRK14294   5 DYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDK-EAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGlSGTGFSGFS 83

                         90       100
                 ....*....|....*....|....*
gi 3402485    82 HFDSPF-EFGftfrnpdDVFREFFG 105
Cdd:PRK14294  84 GFDDIFsSFG-------DIFEDFFG 101
PRK14282 PRK14282
chaperone protein DnaJ; Provisional
 3-107 9.14e-31

chaperone protein DnaJ; Provisional


Pssm-ID: 184603 [Multi-domain]  Cd Length: 369  Bit Score: 116.82  E-value: 9.14e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485     3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKY----GKEGLNGGGG 78
Cdd:PRK14282   5 DYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFgyvgEQPPYQETES 84

                         90       100       110
                 ....*....|....*....|....*....|
gi 3402485    79 GGSHFDSPF-EFGFTFRNpdDVFREFFGGR 107
Cdd:PRK14282  85 GGGFFEDIFkDFENIFNR--DIFDIFFGER 112
PRK14290 PRK14290
chaperone protein DnaJ; Provisional
 3-106 1.06e-29

chaperone protein DnaJ; Provisional


Pssm-ID: 172778 [Multi-domain]  Cd Length: 365  Bit Score: 113.87  E-value: 1.06e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485     3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDK-----YGKEGLNGGG 77
Cdd:PRK14290   4 DYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQtgtvdFGAGGSNFNW 83

                         90       100
                 ....*....|....*....|....*....
gi 3402485    78 GGGSHFDspfefgftfrNPDDVFREFFGG 106
Cdd:PRK14290  84 DNFTHFS----------DINDIFNQIFGG 102
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 3-58 7.28e-29

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 103.39  E-value: 7.28e-29
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 3402485    3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENkEEAERKFKQVAEAYEVLSD 58
Cdd:cd06257   1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD-PEAEEKFKEINEAYEVLSD 55
PRK14280 PRK14280
molecular chaperone DnaJ;
3-109 8.98e-29

molecular chaperone DnaJ;


Pssm-ID: 237656 [Multi-domain]  Cd Length: 376  Bit Score: 111.35  E-value: 8.98e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485     3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPEnkEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGGSH 82
Cdd:PRK14280   5 DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE--EGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGF 82

                         90       100       110
                 ....*....|....*....|....*....|.
gi 3402485    83 FDSPFEFGFTFrnpDDVFREFFGG----RDP 109
Cdd:PRK14280  83 GGGDFGGGFGF---EDIFSSFFGGggrrRDP 110
PRK14291 PRK14291
chaperone protein DnaJ; Provisional
 3-106 1.84e-28

chaperone protein DnaJ; Provisional


Pssm-ID: 237661 [Multi-domain]  Cd Length: 382  Bit Score: 110.63  E-value: 1.84e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485     3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPEnkEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGGSH 82
Cdd:PRK14291   4 DYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN--PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQG 81

                         90       100
                 ....*....|....*....|....
gi 3402485    83 FDSpfEFGFTFRNPDDVFREFFGG 106
Cdd:PRK14291  82 QEG--FSDFGGGNIEDILEDVFDI 103
PRK14298 PRK14298
chaperone protein DnaJ; Provisional
 3-106 4.77e-28

chaperone protein DnaJ; Provisional


Pssm-ID: 184612 [Multi-domain]  Cd Length: 377  Bit Score: 109.55  E-value: 4.77e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485     3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPEnkEEAERKFKQVAEAYEVLSDAKKRDIYDKYgkeglnggggGGSH 82
Cdd:PRK14298   6 DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE--PDAEEKFKEISEAYAVLSDAEKRAQYDRF----------GHAG 73

                         90       100
                 ....*....|....*....|....*....
gi 3402485    83 FDSPFEFGFTFRNPD-----DVFREFFGG 106
Cdd:PRK14298  74 IDNQYSAEDIFRGADfggfgDIFEMFFGG 102
SEC63 COG5407
Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular ...
 3-62 6.35e-28

Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 444165 [Multi-domain]  Cd Length: 61  Bit Score: 100.84  E-value: 6.35e-28
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485    3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKR 62
Cdd:COG5407   1 DPYEVLGVAKTASADEIKKAYRKLAKKYHPDRNKGDP-KAEERFKEINEAYELLSDAEKR 59
PRK14284 PRK14284
chaperone protein DnaJ; Provisional
 3-105 7.81e-28

chaperone protein DnaJ; Provisional


Pssm-ID: 237658 [Multi-domain]  Cd Length: 391  Bit Score: 109.16  E-value: 7.81e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485     3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKRDIYDKYGKeglnggggggsh 82
Cdd:PRK14284   2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDA-EAEKRFKEVSEAYEVLSDAQKRESYDRYGK------------ 68

                         90       100
                 ....*....|....*....|....*...
gi 3402485    83 fDSPFEF-----GFTFRNPDDVFREFFG 105
Cdd:PRK14284  69 -DGPFAGaggfgGAGMGNMEDALRTFMG 95
PRK14301 PRK14301
chaperone protein DnaJ; Provisional
 3-105 8.55e-28

chaperone protein DnaJ; Provisional


Pssm-ID: 237668 [Multi-domain]  Cd Length: 373  Bit Score: 108.68  E-value: 8.55e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485     3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENkEEAERKFKQVAEAYEVLSDAKKRDIYDKYgKEGLNGGGGGGSH 82
Cdd:PRK14301   5 DYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN-PEAEQKFKEAAEAYEVLRDAEKRARYDRF-GHAGVNGNGGFGG 82

                         90       100
                 ....*....|....*....|...
gi 3402485    83 FDSPFEFgftFRNPDDVFREFFG 105
Cdd:PRK14301  83 FSSAEDI---FSHFSDIFGDLFG 102
CbpA COG2214
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];
1-66 2.26e-27

Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];


Pssm-ID: 441816 [Multi-domain]  Cd Length: 91  Bit Score: 100.56  E-value: 2.26e-27
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 3402485    1 MVDYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYD 66
Cdd:COG2214   4 LKDHYAVLGVPPDASLEEIRQAYRRLAKLLHPDRGGELKALAEELFQRLNEAYEVLSDPERRAEYD 69
PRK14281 PRK14281
chaperone protein DnaJ; Provisional
 3-68 2.92e-27

chaperone protein DnaJ; Provisional


Pssm-ID: 237657 [Multi-domain]  Cd Length: 397  Bit Score: 107.59  E-value: 2.92e-27
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 3402485     3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKRDIYDKY 68
Cdd:PRK14281   4 DYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNK-EAEEHFKEVNEAYEVLSNDDKRRRYDQF 68
PRK14278 PRK14278
chaperone protein DnaJ; Provisional
 3-106 8.66e-27

chaperone protein DnaJ; Provisional


Pssm-ID: 237654 [Multi-domain]  Cd Length: 378  Bit Score: 106.29  E-value: 8.66e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485     3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPEnkEEAERKFKQVAEAYEVLSDAKKRDIYDKYGkeglnggggggsh 82
Cdd:PRK14278   4 DYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD--EEAQEKFKEISVAYEVLSDPEKRRIVDLGG------------- 68

                         90       100       110
                 ....*....|....*....|....*....|..
gi 3402485    83 fdSPFE--------FGFTFRNPDDVFREFFGG 106
Cdd:PRK14278  69 --DPLEsaggggggFGGGFGGLGDVFEAFFGG 98
PRK14276 PRK14276
chaperone protein DnaJ; Provisional
 3-109 1.04e-26

chaperone protein DnaJ; Provisional


Pssm-ID: 237653 [Multi-domain]  Cd Length: 380  Bit Score: 105.94  E-value: 1.04e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485     3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPEnkEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNG----GGG 78
Cdd:PRK14276   5 EYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE--PGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGgfggGAG 82

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 3402485    79 GGSHFDSPFEFG-FtfrnpDDVFREFFGG----RDP 109
Cdd:PRK14276  83 GFGGFDGSGGFGgF-----EDIFSSFFGGggarRNP 113
PRK14277 PRK14277
chaperone protein DnaJ; Provisional
 3-105 1.74e-26

chaperone protein DnaJ; Provisional


Pssm-ID: 184599 [Multi-domain]  Cd Length: 386  Bit Score: 105.27  E-value: 1.74e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485     3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGGSH 82
Cdd:PRK14277   6 DYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDK-EAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQGG 84

                         90       100
                 ....*....|....*....|....*..
gi 3402485    83 FD----SPFEFGFTFRNPDDVFREFFG 105
Cdd:PRK14277  85 FGqggfGGGGFDFDFGGFGDIFEDIFG 111
PRK14292 PRK14292
chaperone protein DnaJ; Provisional
 1-106 2.69e-26

chaperone protein DnaJ; Provisional


Pssm-ID: 237662 [Multi-domain]  Cd Length: 371  Bit Score: 104.59  E-value: 2.69e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485     1 MVDYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPEnkEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGG 80
Cdd:PRK14292   1 MMDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE--KGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGD 78

                         90       100
                 ....*....|....*....|....*.
gi 3402485    81 ShfdspfeFGFTFRNPDDVFREFFGG 106
Cdd:PRK14292  79 P-------FGGMGFDPMDIFEQLFGG 97
PRK14297 PRK14297
molecular chaperone DnaJ;
3-106 3.63e-26

molecular chaperone DnaJ;


Pssm-ID: 184611 [Multi-domain]  Cd Length: 380  Bit Score: 104.48  E-value: 3.63e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485     3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGGSH 82
Cdd:PRK14297   5 DYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNK-EAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGSG 83

                         90       100
                 ....*....|....*....|....
gi 3402485    83 FDSPFEFgFTFRNPDDVFREFFGG 106
Cdd:PRK14297  84 GFGGFDF-SDMGGFGDIFDSFFGG 106
terminal_TopJ NF037946
terminal organelle assembly protein TopJ;
3-151 4.93e-26

terminal organelle assembly protein TopJ;


Pssm-ID: 468284 [Multi-domain]  Cd Length: 440  Bit Score: 104.90  E-value: 4.93e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485     3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPEnkEEAERKFKQVAEAYEVLSDAKKRDIYDKYgkeglnggggggSH 82
Cdd:NF037946   6 DYYEVLGVDRDADDQEIKKAFRKLAKKYHPDRNKA--PDAAEIFAEINEAYEVLSNPEKRANYDKY------------GH 71

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 3402485    83 FDSPFEFGFTFrNPDDVFREFFGG----------RDPFSFDFFEDPFEDFFGNRRGPRGSRSRGTGSFFSAFSGFPSFG 151
Cdd:NF037946  72 DGVDGEGGFGF-DAFDVFSSFFETinksgaflddSVDESVSADDDLDRLFDDSKEPSFTSGLDEIVQFWEAFIGNPDYG 149
PRK14289 PRK14289
molecular chaperone DnaJ;
3-68 6.23e-25

molecular chaperone DnaJ;


Pssm-ID: 237660 [Multi-domain]  Cd Length: 386  Bit Score: 101.06  E-value: 6.23e-25
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 3402485     3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKRDIYDKY 68
Cdd:PRK14289   6 DYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDK-EAEEKFKEAAEAYDVLSDPDKRSRYDQF 70
PRK14283 PRK14283
chaperone protein DnaJ; Provisional
 3-106 3.04e-24

chaperone protein DnaJ; Provisional


Pssm-ID: 184604 [Multi-domain]  Cd Length: 378  Bit Score: 99.13  E-value: 3.04e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485     3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPEnkEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGGSH 82
Cdd:PRK14283   6 DYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE--EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQEDIF 83

                         90       100
                 ....*....|....*....|....*....
gi 3402485    83 FDSPFE-----FGFTFRNPDDVFRefFGG 106
Cdd:PRK14283  84 NNINFEdifqgFGFGIGNIFDMFG--FGG 110
PRK14286 PRK14286
chaperone protein DnaJ; Provisional
 4-106 3.96e-24

chaperone protein DnaJ; Provisional


Pssm-ID: 172774 [Multi-domain]  Cd Length: 372  Bit Score: 98.91  E-value: 3.96e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485     4 YYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGGSHf 83
Cdd:PRK14286   6 YYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNK-ESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFGQ- 83

                         90       100
                 ....*....|....*....|...
gi 3402485    84 DSPFEFGFTFRNPDDVFREFFGG 106
Cdd:PRK14286  84 GAYTDFSDIFGDFGDIFGDFFGG 106
PRK14279 PRK14279
molecular chaperone DnaJ;
3-66 7.97e-24

molecular chaperone DnaJ;


Pssm-ID: 237655 [Multi-domain]  Cd Length: 392  Bit Score: 98.27  E-value: 7.97e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 3402485     3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKEEAERkFKQVAEAYEVLSDAKKRDIYD 66
Cdd:PRK14279  10 DFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEER-FKAVSEAHDVLSDPAKRKEYD 72
PRK14299 PRK14299
chaperone protein DnaJ; Provisional
 3-110 2.66e-23

chaperone protein DnaJ; Provisional


Pssm-ID: 237667 [Multi-domain]  Cd Length: 291  Bit Score: 95.39  E-value: 2.66e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485     3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPEnkEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGGSH 82
Cdd:PRK14299   5 DYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS--PGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPPP 82

                         90       100       110
                 ....*....|....*....|....*....|.
gi 3402485    83 fDSPFEFGFTFRNPDD---VFREFFGGRDPF 110
Cdd:PRK14299  83 -GPPGGGDFSGFNVGDfsdFFQQLFGGRGGF 112
PRK14293 PRK14293
molecular chaperone DnaJ;
1-68 2.84e-22

molecular chaperone DnaJ;


Pssm-ID: 237663 [Multi-domain]  Cd Length: 374  Bit Score: 93.52  E-value: 2.84e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 3402485     1 MVDYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPEnkEEAERKFKQVAEAYEVLSDAKKRDIYDKY 68
Cdd:PRK14293   2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE--PGAEDRFKEINRAYEVLSDPETRARYDQF 67
PRK14285 PRK14285
chaperone protein DnaJ; Provisional
 3-107 1.06e-21

chaperone protein DnaJ; Provisional


Pssm-ID: 172773 [Multi-domain]  Cd Length: 365  Bit Score: 91.98  E-value: 1.06e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485     3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKRDIYDKYgKEGLNGGGGGGSH 82
Cdd:PRK14285   4 DYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNK-EAESIFKEATEAYEVLIDDNKRAQYDRF-GHTAFEGGGGFEG 81

                         90       100
                 ....*....|....*....|....*.
gi 3402485    83 FDSPFE-FGFTFRNPDDVFREFFGGR 107
Cdd:PRK14285  82 FSGGFSgFSDIFEDFGDIFDSFFTGN 107
PRK14295 PRK14295
molecular chaperone DnaJ;
3-66 5.04e-21

molecular chaperone DnaJ;


Pssm-ID: 237665 [Multi-domain]  Cd Length: 389  Bit Score: 90.29  E-value: 5.04e-21
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 3402485     3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKeEAERKFKQVAEAYEVLSDAKKRDIYD 66
Cdd:PRK14295  10 DYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDA-KAEERFKEISEAYDVLSDEKKRKEYD 72
termin_org_DnaJ TIGR03835
terminal organelle assembly protein TopJ; This model describes TopJ (MG_200, CbpA), a DnaJ ...
 3-104 3.98e-20

terminal organelle assembly protein TopJ; This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274808 [Multi-domain]  Cd Length: 871  Bit Score: 88.72  E-value: 3.98e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485      3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNpeNKEEAERKFKQVAEAYEVLSDAKKRDIYDKYgkeglnggggggSH 82
Cdd:TIGR03835   3 DYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRN--KAPDAASIFAEINEANDVLSNPKKRANYDKY------------GH 68

                          90       100
                  ....*....|....*....|..
gi 3402485     83 FDSPFEFGFTFRnpDDVFREFF 104
Cdd:TIGR03835  69 DGVDREDDFDFQ--ADVFNSFF 88
PRK14287 PRK14287
chaperone protein DnaJ; Provisional
 3-106 6.14e-20

chaperone protein DnaJ; Provisional


Pssm-ID: 237659 [Multi-domain]  Cd Length: 371  Bit Score: 87.37  E-value: 6.14e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485     3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPEnkEEAERKFKQVAEAYEVLSDAKKRDIYDKYgkeglnggggggSH 82
Cdd:PRK14287   5 DYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA--PDAEDKFKEVKEAYDTLSDPQKKAHYDQF------------GH 70

                         90       100
                 ....*....|....*....|....*...
gi 3402485    83 FDSPFEFGFT----FRNPDDVFREFFGG 106
Cdd:PRK14287  71 TDPNQGFGGGgagdFGGFSDIFDMFFGG 98
PTZ00037 PTZ00037
DnaJ_C chaperone protein; Provisional
 4-106 4.91e-19

DnaJ_C chaperone protein; Provisional


Pssm-ID: 240236 [Multi-domain]  Cd Length: 421  Bit Score: 84.87  E-value: 4.91e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485     4 YYEVLGVQRHASPEDIKKAYRKLALKWHPDK--NPEnkeeaerKFKQVAEAYEVLSDAKKRDIYDKYGkeglnggggggs 81
Cdd:PTZ00037  30 LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKggDPE-------KFKEISRAYEVLSDPEKRKIYDEYG------------ 90

                         90       100
                 ....*....|....*....|....*
gi 3402485    82 hfDSPFEFGFTFRNPDDVFREFFGG 106
Cdd:PTZ00037  91 --EEGLEGGEQPADASDLFDLIFGG 113
PRK14288 PRK14288
molecular chaperone DnaJ;
2-94 1.10e-18

molecular chaperone DnaJ;


Pssm-ID: 172776 [Multi-domain]  Cd Length: 369  Bit Score: 83.59  E-value: 1.10e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485     2 VDYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKEeAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGGS 81
Cdd:PRK14288   3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKE-AEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGASQS 81

                         90       100
                 ....*....|....*....|..
gi 3402485    82 HFDSPFE---------FGFTFR 94
Cdd:PRK14288  82 DFSDFFEdlgsffedaFGFGAR 103
PRK10266 PRK10266
curved DNA-binding protein;
3-105 2.03e-18

curved DNA-binding protein;


Pssm-ID: 182347 [Multi-domain]  Cd Length: 306  Bit Score: 82.18  E-value: 2.03e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485     3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENkeEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGGSH 82
Cdd:PRK10266   5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP--DAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQ 82

                         90       100
                 ....*....|....*....|...
gi 3402485    83 FDSPFEFGftFRNPDDVFREFFG 105
Cdd:PRK10266  83 HGDGQSFN--AEDFDDIFSSIFG 103
DjlA COG1076
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];
1-64 4.23e-17

DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440694 [Multi-domain]  Cd Length: 75  Bit Score: 73.29  E-value: 4.23e-17
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 3402485    1 MVDYYEVLGVQRHASPEDIKKAYRKLALKWHPDK-----NPENKEEAERKFKQVAEAYEVLSDAKKRDI 64
Cdd:COG1076   3 LDDAFELLGLPPDADDAELKRAYRKLQREHHPDRlaaglPEEEQRLALQKAAAINEAYETLKDPRGIDL 71
PRK14296 PRK14296
chaperone protein DnaJ; Provisional
 3-105 7.39e-17

chaperone protein DnaJ; Provisional


Pssm-ID: 237666 [Multi-domain]  Cd Length: 372  Bit Score: 78.45  E-value: 7.39e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485     3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENkeEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGGGGGSH 82
Cdd:PRK14296   5 DYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSP--DAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSSN 82

                         90       100
                 ....*....|....*....|....*....
gi 3402485    83 FdSPFEFGFT------FRNPDDVFREFFG 105
Cdd:PRK14296  83 F-GDFEDLFSnmgssgFSSFTNIFSDFFG 110
PRK14300 PRK14300
chaperone protein DnaJ; Provisional
 3-68 2.80e-16

chaperone protein DnaJ; Provisional


Pssm-ID: 172788 [Multi-domain]  Cd Length: 372  Bit Score: 76.98  E-value: 2.80e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 3402485     3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNpeNKEEAERKFKQVAEAYEVLSDAKKRDIYDKY 68
Cdd:PRK14300   4 DYYQILGVSKTASQADLKKAYLKLAKQYHPDTT--DAKDAEKKFKEINAAYDVLKDEQKRAAYDRF 67
PTZ00341 PTZ00341
Ring-infected erythrocyte surface antigen; Provisional
 4-68 1.59e-10

Ring-infected erythrocyte surface antigen; Provisional


Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 60.57  E-value: 1.59e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 3402485      4 YYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENkeEAERKFKQVAEAYEVLSDAKKRDIYDKY 68
Cdd:PTZ00341  575 FYDILGVGVNADMKEISERYFKLAENYYPPKRSGN--EGFHKFKKINEAYQILGDIDKKKMYNKF 637
ZUO1 COG5269
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / ...
 2-66 9.79e-08

Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227594 [Multi-domain]  Cd Length: 379  Bit Score: 51.96  E-value: 9.79e-08
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 3402485    2 VDYYEVLGVQRH---ASPEDIKKAYRKLALKWHPDKNPENKEEAERK-FKQVAEAYEVLSDAKKRDIYD 66
Cdd:COG5269  43 VDLYALLGLSKYrtkAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEfFKLIQKAREVLGDRKLRLQYD 111
djlA PRK09430
co-chaperone DjlA;
3-61 2.63e-07

co-chaperone DjlA;


Pssm-ID: 236512 [Multi-domain]  Cd Length: 267  Bit Score: 50.20  E-value: 2.63e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 3402485     3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDK------NPENKEEAERKFKQVAEAYEVLSDAKK 61
Cdd:PRK09430 201 DAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKlvakglPPEMMEMAKEKAQEIQAAYELIKKQKG 265
hscB PRK01356
co-chaperone HscB; Provisional
 1-65 7.50e-05

co-chaperone HscB; Provisional


Pssm-ID: 167217 [Multi-domain]  Cd Length: 166  Bit Score: 41.79  E-value: 7.50e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3402485     1 MVDYYEVLGVQRHASP--EDIKKAYRKLALKWHPDKnPENKEEAERKFKQVAE---AYEVLSDAKKRDIY 65
Cdd:PRK01356   1 MQNYFQLLGLPQEYNIdlKILEKQYFAMQVKYHPDK-AKTLQEKEQNLIIASElnnAYSTLKDALKRAEY 69
PHA03102 PHA03102
Small T antigen; Reviewed
 6-37 1.77e-03

Small T antigen; Reviewed


Pssm-ID: 222986 [Multi-domain]  Cd Length: 153  Bit Score: 37.73  E-value: 1.77e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 3402485     6 EVLGVQRHA--SPEDIKKAYRKLALKWHPDK--NPE 37
Cdd:PHA03102   9 DLLGLPRSAwgNLPLMRKAYLRKCLEFHPDKggDEE 44
PHA02624 PHA02624
large T antigen; Provisional
 6-62 9.05e-03

large T antigen; Provisional


Pssm-ID: 222912 [Multi-domain]  Cd Length: 647  Bit Score: 36.89  E-value: 9.05e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 3402485     6 EVLGVQRHA--SPEDIKKAYRKLALKWHPDK--NPEnkeeaerKFKQVAEAYEVLSDAKKR 62
Cdd:PHA02624  15 DLLGLPMAAwgNLPLMRKAYLRKCKEYHPDKggDEE-------KMKRLNSLYKKLQEGVKS 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH