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Conserved domains on  [gi|5821143|dbj|BAA83713|]
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RNA binding protein, partial [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA03307 super family cl33723
transcriptional regulator ICP4; Provisional
 83-390 5.85e-07

transcriptional regulator ICP4; Provisional


The actual alignment was detected with superfamily member PHA03307:

Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 54.41  E-value: 5.85e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143     83 GRSPSPASGRRGEGDAPFSEPGTTSTQRPSS----PETATKQPSSPYEDKDKDKKEKSATRPSPSPERSSTGPEPPAPTP 158
Cdd:PHA03307   81 ANESRSTPTWSLSTLAPASPAREGSPTPPGPsspdPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPA 160

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143    159 LLAERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSPPKSPeklpqssssessppsPQPTKVSRHASSSPESPKPAPAPG 238
Cdd:PHA03307  161 AVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAA---------------ASPRPPRRSSPISASASSPAPAPG 225

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143    239 SHREISSSPTSKNRSHGRAKRDKSH--------SHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSaq 310
Cdd:PHA03307  226 RSAADDAGASSSDSSSSESSGCGWGpenecplpRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSP-- 303

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143    311 RWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPT 390
Cdd:PHA03307  304 GSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAG 383
 
Name Accession Description Interval E-value
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 83-390 5.85e-07

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 54.41  E-value: 5.85e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143     83 GRSPSPASGRRGEGDAPFSEPGTTSTQRPSS----PETATKQPSSPYEDKDKDKKEKSATRPSPSPERSSTGPEPPAPTP 158
Cdd:PHA03307   81 ANESRSTPTWSLSTLAPASPAREGSPTPPGPsspdPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPA 160

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143    159 LLAERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSPPKSPeklpqssssessppsPQPTKVSRHASSSPESPKPAPAPG 238
Cdd:PHA03307  161 AVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAA---------------ASPRPPRRSSPISASASSPAPAPG 225

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143    239 SHREISSSPTSKNRSHGRAKRDKSH--------SHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSaq 310
Cdd:PHA03307  226 RSAADDAGASSSDSSSSESSGCGWGpenecplpRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSP-- 303

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143    311 RWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPT 390
Cdd:PHA03307  304 GSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAG 383
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 104-317 2.93e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 41.83  E-value: 2.93e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143     104 GTTSTQRPSSPETATKQPSSPYEDKDKDKKEKSATRPSP---SPERSSTGPEPPAPTPLLAER-----------HGGSPQ 169
Cdd:pfam05109  480 GTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPnatSPTPAVTTPTPNATSPTLGKTsptsavttptpNATSPT 559

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143     170 PLATTPLSQEPVNPPSEASPTRDRSPP----KSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISS 245
Cdd:pfam05109  560 PAVTTPTPNATIPTLGKTSPTSAVTTPtpnaTSPTVGETSPQANTTNHTLGGTSSTPVVTSPPKNATSAVTTGQHNITSS 639

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 5821143     246 S-------PTSKNRSHGRAKRDKSHSHTPsrrMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRS 317
Cdd:pfam05109  640 StssmslrPSSISETLSPSTSDNSTSHMP---LLTSAHPTGGENITQVTPASTSTHHVSTSSPAPRPGTTSQASGPGNS 715
 
Name Accession Description Interval E-value
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 83-390 5.85e-07

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 54.41  E-value: 5.85e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143     83 GRSPSPASGRRGEGDAPFSEPGTTSTQRPSS----PETATKQPSSPYEDKDKDKKEKSATRPSPSPERSSTGPEPPAPTP 158
Cdd:PHA03307   81 ANESRSTPTWSLSTLAPASPAREGSPTPPGPsspdPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPA 160

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143    159 LLAERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSPPKSPeklpqssssessppsPQPTKVSRHASSSPESPKPAPAPG 238
Cdd:PHA03307  161 AVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAA---------------ASPRPPRRSSPISASASSPAPAPG 225

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143    239 SHREISSSPTSKNRSHGRAKRDKSH--------SHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSaq 310
Cdd:PHA03307  226 RSAADDAGASSSDSSSSESSGCGWGpenecplpRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSP-- 303

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143    311 RWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPT 390
Cdd:PHA03307  304 GSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAG 383
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
103-201 1.80e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 52.47  E-value: 1.80e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143    103 PGTTSTQRPSSPetATKQPSSPYEDKdkdkkekSATRPSPSPERSSTGPEPPAPTPllAERHGGSPQPLATTPLSQEPVN 182
Cdd:PRK14971  370 SGGRGPKQHIKP--VFTQPAAAPQPS-------AAAAASPSPSQSSAAAQPSAPQS--ATQPAGTPPTVSVDPPAAVPVN 438

                          90
                  ....*....|....*....
gi 5821143    183 PPSEASPTRDRSPPKSPEK 201
Cdd:PRK14971  439 PPSTAPQAVRPAQFKEEKK 457
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 21-330 2.20e-06

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 52.48  E-value: 2.20e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143     21 SPTPKSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAkthTTALAGRSPSPASGRRGEGDAPF 100
Cdd:PHA03307  125 SPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSS---PEETARAPSSPPAEPPPSTPPAA 201

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143    101 SEPGTTSTQRPSSPETATKQPSSPYEDKDKDKKEKSATRPSPSPErSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQEP 180
Cdd:PHA03307  202 ASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSG-CGWGPENECPLPRPAPITLPTRIWEASGWNGPSS 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143    181 VNPP-SEASPTRDRSPPKSPEKlpqssssESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREiSSSPTSKNRSHGRakr 259
Cdd:PHA03307  281 RPGPaSSSSSPRERSPSPSPSS-------PGSGPAPSSPRASSSSSSSRESSSSSTSSSSESS-RGAAVSPGPSPSR--- 349

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 5821143    260 dkshSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRP 330
Cdd:PHA03307  350 ----SPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSP 416
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 77-371 2.47e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 49.01  E-value: 2.47e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143     77 HTTALAGRSPSPASGRRGEGDAPFSEPGTTSTQRPSSPETATKQPSSPYEDKDKDKKEKSATRPSPSPERSSTGPEPPAP 156
Cdd:PHA03307   49 ELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPP 128

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143    157 TP----LLAERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSPPKSPEKLPQSSSS-----------ESSPPSPQPTKVS 221
Cdd:PHA03307  129 SPapdlSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARapssppaepppSTPPAAASPRPPR 208

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143    222 RHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSH--------SHTPSRRMGRSRSPATAKRGRSRSRTPTKR 293
Cdd:PHA03307  209 RSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGpenecplpRPAPITLPTRIWEASGWNGPSSRPGPASSS 288

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 5821143    294 GHSRSRSPQWRRSRSaqRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARR 371
Cdd:PHA03307  289 SSPRERSPSPSPSSP--GSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSS 364
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 85-477 6.10e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 47.47  E-value: 6.10e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143     85 SPSPASGRRGEGDAPFSEPGTTSTQRPSSPETATKQPSSPyedkDKDKKEKSATRPSPSPERSSTGPEPPAPTPllaerh 164
Cdd:PHA03307   39 SQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTE----APANESRSTPTWSLSTLAPASPAREGSPTP------ 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143    165 gGSPQPLATTPLSQEPVNPPSEASPTRdRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREIS 244
Cdd:PHA03307  109 -PGPSSPDPPPPTPPPASPPPSPAPDL-SEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAP 186

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143    245 SSPTSKNRShgrakrdkshSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRS 324
Cdd:PHA03307  187 SSPPAEPPP----------STPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECP 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143    325 RSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGR 404
Cdd:PHA03307  257 LPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESS 336

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 5821143    405 SRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSrtpARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPA 477
Cdd:PHA03307  337 RGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRP---SRAPSSPAASAGRPTRRRARAAVAGRARRRDATGR 406
PHA03247 PHA03247
large tegument protein UL36; Provisional
 101-257 9.12e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.24  E-value: 9.12e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143    101 SEPGTTS-TQRPSSPetatKQPSSPYEDKDKDKKEKSATRPSPSPErSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQE 179
Cdd:PHA03247 2578 SEPAVTSrARRPDAP----PQSARPRAPVDDRGDPRGPAPPSPLPP-DTHAPDPPPPSPSPAANEPDPHPPPTVPPPERP 2652

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 5821143    180 PVNP-PSEASPTRdRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRA 257
Cdd:PHA03247 2653 RDDPaPGRVSRPR-RARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQ 2730
PHA03247 PHA03247
large tegument protein UL36; Provisional
 85-330 8.27e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.16  E-value: 8.27e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143     85 SPSPASGRRGEGDAPFSEP-----GTTSTQRPSSPETATKQPSSPYEDKDKDKKEKSATRPSPSPERSSTGPEPPAPTPL 159
Cdd:PHA03247 2630 SPSPAANEPDPHPPPTVPPperprDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPE 2709

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143    160 LAERHGGSPQPLATTPLSQ---------EPVNPPSEASPTRDRSP--------------PKSPEKLPQSSSSESSPPSPQ 216
Cdd:PHA03247 2710 PAPHALVSATPLPPGPAAArqaspalpaAPAPPAVPAGPATPGGParparppttagppaPAPPAAPAAGPPRRLTRPAVA 2789

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143    217 PTKVSRHASSSPESPKPAPAPGSHREiSSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSP-----ATAKRGRSRSRTPT 291
Cdd:PHA03247 2790 SLSESRESLPSPWDPADPPAAVLAPA-AALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSlplggSVAPGGDVRRRPPS 2868

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 5821143    292 KRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRP 330
Cdd:PHA03247 2869 RSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPER 2907
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 195-372 1.68e-03

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 42.58  E-value: 1.68e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143    195 PPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAkRDKSHSHTPSRRMGRS 274
Cdd:PRK12678   65 AAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQA-RERRERGEAARRGAAR 143

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143    275 RSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHS 354
Cdd:PRK12678  144 KAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDG 223

                         170
                  ....*....|....*...
gi 5821143    355 RSPATRGRSRSRTPARRG 372
Cdd:PRK12678  224 GDRRGRRRRRDRRDARGD 241
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 104-317 2.93e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 41.83  E-value: 2.93e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143     104 GTTSTQRPSSPETATKQPSSPYEDKDKDKKEKSATRPSP---SPERSSTGPEPPAPTPLLAER-----------HGGSPQ 169
Cdd:pfam05109  480 GTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPnatSPTPAVTTPTPNATSPTLGKTsptsavttptpNATSPT 559

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143     170 PLATTPLSQEPVNPPSEASPTRDRSPP----KSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISS 245
Cdd:pfam05109  560 PAVTTPTPNATIPTLGKTSPTSAVTTPtpnaTSPTVGETSPQANTTNHTLGGTSSTPVVTSPPKNATSAVTTGQHNITSS 639

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 5821143     246 S-------PTSKNRSHGRAKRDKSHSHTPsrrMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRS 317
Cdd:pfam05109  640 StssmslrPSSISETLSPSTSDNSTSHMP---LLTSAHPTGGENITQVTPASTSTHHVSTSSPAPRPGTTSQASGPGNS 715
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
82-309 4.68e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 41.37  E-value: 4.68e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143     82 AGRSPSPASGRRGEGDAPFSEPGTTSTQRPSSPETATKqPSSPYEDKDKDKKEKSATRPSPSPERSSTGPEPPAPTPLLA 161
Cdd:PRK07003  385 ARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATR-AEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRC 463

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143    162 ERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHR 241
Cdd:PRK07003  464 DERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPA 543

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143    242 EISSSPT-------------SKNRSHGRAKRDKSHSHTP-SRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSR 307
Cdd:PRK07003  544 ARAGGAAaaldvlrnagmrvSSDRGARAAAAAKPAAAPAaAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESR 623


                  ..
gi 5821143    308 SA 309
Cdd:PRK07003  624 GA 625
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 15-267 6.12e-03

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 40.83  E-value: 6.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143     15 KKRKHRSPTPKSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPASGRRg 94
Cdd:PTZ00449  490 KKSKKKLAPIEEEDSDKHDEPPEGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHK- 568

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143     95 egdaPFSEPgtTSTQRPSSPETAT--KQPSSPYEDKDKDKKEKSATRPSPS-PERSSTGPEPPAPTPLLAERHGGSPQPL 171
Cdd:PTZ00449  569 ----PSKIP--TLSKKPEFPKDPKhpKDPEEPKKPKRPRSAQRPTRPKSPKlPELLDIPKSPKRPESPKSPKRPPPPQRP 642

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143    172 ATTPLSQEPVNPPSEASPTRDRSP--PKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTS 249
Cdd:PTZ00449  643 SSPERPEGPKIIKSPKPPKSPKPPfdPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLP 722

                         250
                  ....*....|....*...
gi 5821143    250 KNRShgrakRDKSHSHTP 267
Cdd:PTZ00449  723 PKLP-----RDEEFPFEP 735
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 86-237 6.25e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.74  E-value: 6.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5821143     86 PSPASGRRGEGDAPFSEPGTTSTQRPSSPETATKQPSSPYEDKDKDKKEKSATRPSPSPERSSTGPEPPAPTPLL----A 161
Cdd:PRK07764  590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDggdgW 669

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 5821143    162 ERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAP 237
Cdd:PRK07764  670 PAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEP 745
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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