|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
874-1571 |
9.21e-20 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 96.66 E-value: 9.21e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 874 LKRQLEEKEKLLATEQEDAAVAKskLRELNKEMAAEKAKAAAGEAkvkkQLVAREQEITAVQAR---MQASYREHVKEVQ 950
Cdd:TIGR02168 218 LKAELRELELALLVLRLEELREE--LEELQEELKEAEEELEELTA----ELQELEEKLEELRLEvseLEEEIEELQKELY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 951 QLQGKIRTLQEQLENGpNTQLARLQQENSILRDALNQATSQVEsKQNAELAKLRQELSKVSKELVEKSEAVRQDEQQRKA 1030
Cdd:TIGR02168 292 ALANEISRLEQQKQIL-RERLANLERQLEELEAQLEELESKLD-ELAEELAELEEKLEELKEELESLEAELEELEAELEE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1031 LEAKAAAFEKQVLQLQ---ASHRESEEALQKRLDEVSRELCHTQSSHASLRADAEKAQEQQqqmaelhsklqsSEAEVRS 1107
Cdd:TIGR02168 370 LESRLEELEEQLETLRskvAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL------------EEAELKE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1108 KCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQardaQDVQASQAEADQQQTRLKELESQVSGLEKEAIELREAVE 1187
Cdd:TIGR02168 438 LQAELEELEEELEELQEELERLEEALEELREELEEAE----QALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLK 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1188 QQKVKNNDL---------REKNWKAMEAL--ATAEQACKEKLHSLTQA----KEESEKQLCLIEAQTMEALLALLPELSV 1252
Cdd:TIGR02168 514 NQSGLSGILgvlselisvDEGYEAAIEAAlgGRLQAVVVENLNAAKKAiaflKQNELGRVTFLPLDSIKGTEIQGNDREI 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1253 LAQQ--------------------------------NYTEWLQDLKEKGP-----TL---LKHP-----PAPAEPSS--- 1284
Cdd:TIGR02168 594 LKNIegflgvakdlvkfdpklrkalsyllggvlvvdDLDNALELAKKLRPgyrivTLdgdLVRPggvitGGSAKTNSsil 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1285 -------DLASKLREAEETQSTLQAECDQYRSILAETEGMLRDLQKSVEEEEQvwraKVGAAEEELQKSRVTVKHLEEIV 1357
Cdd:TIGR02168 674 errreieELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR----QISALRKDLARLEAEVEQLEERI 749
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1358 EKLKGELESSDQVREHTLHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEM 1437
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESL 829
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1438 KSHVEDgdiagapasspeappaeqdpvqLKTQLEWTEAILEDEQTQRQKLTAEFEEAQTSACRLQEELEKL-----RTAG 1512
Cdd:TIGR02168 830 ERRIAA----------------------TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALlneraSLEE 887
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*....
gi 14133249 1513 PLESSETEEASQLKERLEKEKKLtSDLGRAATRLQELLKTTQEQLAREKDTVKKLQEQL 1571
Cdd:TIGR02168 888 ALALLRSELEELSEELRELESKR-SELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
929-1511 |
1.70e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 92.31 E-value: 1.70e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 929 QEITAVQARMQASYREHVK-EVQQLQGKIRTLQEQLENGpNTQLARLQQENSILRDALNQATSQVESKQnAELAKLRQEL 1007
Cdd:COG1196 220 EELKELEAELLLLKLRELEaELEELEAELEELEAELEEL-EAELAELEAELEELRLELEELELELEEAQ-AEEYELLAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1008 SKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQA---SHRESEEALQKRLDEVSRELCHTQSSHASLRADAEKA 1084
Cdd:COG1196 298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEeleELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1085 QEQQQQMAELHSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQDVQASQAEADQQQTR 1164
Cdd:COG1196 378 EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1165 LKELESQVSGLEKEAIELREAVEQQKVKNNDLREKNWKAMEALATAEQACKEKLHSLTQAKEESEKQLCLIEAQT-MEAL 1243
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVeAAYE 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1244 LALLPELSVLAQQNYTEWLQDLKEKGPTLLKHPPAPAEPSSDLASKLREAEETQSTLQAECDQYRSI--LAETEGMLRDL 1321
Cdd:COG1196 538 AALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVasDLREADARYYV 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1322 QKSVEEEEQVWRAKVGAAEEELQKSRVTVKHLEEIVEKLKGELESSDQVREHTLHLEAELEKHMAAASAECQNYAKEVAG 1401
Cdd:COG1196 618 LGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEE 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1402 LRQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKSHVEDGDIAGAPASSPEAPPAEQDPVQLKTQlewtEAILEDEQ 1481
Cdd:COG1196 698 ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL----ERELERLE 773
|
570 580 590
....*....|....*....|....*....|....*..
gi 14133249 1482 TQRQKLTA-------EFEEAQTSACRLQEELEKLRTA 1511
Cdd:COG1196 774 REIEALGPvnllaieEYEELEERYDFLSEQREDLEEA 810
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
940-1576 |
1.86e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.96 E-value: 1.86e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 940 ASYREHVKEVQQLQGKIRTLQEQLENGpNTQLARLQQENSILRDALNQATSQVESKQnAELAKLRQELSKVSKELVEKSE 1019
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAEEELEEL-TAELQELEEKLEELRLEVSELEEEIEELQ-KELYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1020 AVRQDEQQRKALEAKAAAFEKQVLQLQashrESEEALQKRLDEVSRELCHTQSSHASLRADAEKaqeqqqqmaeLHSKLQ 1099
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELA----EELAELEEKLEELKEELESLEAELEELEAELEE----------LESRLE 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1100 SSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEAlleagqARDAQDVQASQAEADQQQTRLKELESQVSGLEKEA 1179
Cdd:TIGR02168 376 ELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED------RRERLQQEIEELLKKLEEAELKELQAELEELEEEL 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1180 IELR---EAVEQQKVKNNDLREKNWKAMEALATAEQACKEKLHSLtQAKEESEKQLCLIEAQTMEALLALLPELSVLAQQ 1256
Cdd:TIGR02168 450 EELQeelERLEEALEELREELEEAEQALDAAERELAQLQARLDSL-ERLQENLEGFSEGVKALLKNQSGLSGILGVLSEL 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1257 -------------------------NYTEWLQD---LKEKGPTLLKHPPAPAEPSSDLASKLREAEETQSTLQAECDQYR 1308
Cdd:TIGR02168 529 isvdegyeaaieaalggrlqavvveNLNAAKKAiafLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLV 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1309 SILAETEGMLRDLqksveeeeqVWRAKVGAAEEELQKSRVTVKHLEEIVeKLKGELES--------SDQVREHTLHLEAE 1380
Cdd:TIGR02168 609 KFDPKLRKALSYL---------LGGVLVVDDLDNALELAKKLRPGYRIV-TLDGDLVRpggvitggSAKTNSSILERRRE 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1381 LEKH---MAAASAECQNYAKEVAGLRQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKSHVEDGDIAGAPASSPEAP 1457
Cdd:TIGR02168 679 IEELeekIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1458 PAEQDPVQLKTQLEWTEAILEDEQtQRQKLTAEFEEAQTSACRLQEELEKLRTAgplESSETEEASQLKERLEKEKKLTS 1537
Cdd:TIGR02168 759 LEAEIEELEERLEEAEEELAEAEA-EIEELEAQIEQLKEELKALREALDELRAE---LTLLNEEAANLRERLESLERRIA 834
|
650 660 670
....*....|....*....|....*....|....*....
gi 14133249 1538 DLGRAATRLQELLKTTQEQLAREKDTVKKLQEQLEKAED 1576
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES 873
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
197-711 |
8.36e-17 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 87.12 E-value: 8.36e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 197 ETAPKEVPMVVVPPVGAKGNTPATGTTQGKKAEGTQNQSKKAEGA----PNQGRKAEGTPNQGKKTEGTPNQGKKAEGTP 272
Cdd:PTZ00121 1325 EEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAekkkEEAKKKADAAKKKAEEKKKADEAKKKAEEDK 1404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 273 NQGKKAEGTPNQGKKAEGAQNQGKKVDTTPNQGKKVEgaptQGRKAEGAQNQAKKVEGAQNQGKKAEgaqnQGKKGEGAQ 352
Cdd:PTZ00121 1405 KKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE----EAKKADEAKKKAEEAKKAEEAKKKAE----EAKKADEAK 1476
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 353 NQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQN--QGKKAEGAQN--QGKKAEGAQNQGKKVEGAQNQGKKA 428
Cdd:PTZ00121 1477 KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKaeEAKKADEAKKaeEAKKADEAKKAEEKKKADELKKAEE 1556
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 429 EGAQNQGKKAEGAQNQGKKAEGAQNQG---KKAEGAQNQGKKAEGAQNQDKKAEgaqnQGRKAEGAQNQGRKAEGAQNQG 505
Cdd:PTZ00121 1557 LKKAEEKKKAEEAKKAEEDKNMALRKAeeaKKAEEARIEEVMKLYEEEKKMKAE----EAKKAEEAKIKAEELKKAEEEK 1632
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 506 KKAEGAPNQGKKAEGAPNQGKKAEgTPNQGKKAEgtpnQGKKAEGTPNQGKKAEGAQNQGKKAEGA----QNQGKKAEGT 581
Cdd:PTZ00121 1633 KKVEQLKKKEAEEKKKAEELKKAE-EENKIKAAE----EAKKAEEDKKKAEEAKKAEEDEKKAAEAlkkeAEEAKKAEEL 1707
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 582 PNQGKKAEGAQNQGKKAE---GAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKVEGAQNQGKKA 658
Cdd:PTZ00121 1708 KKKEAEEKKKAEELKKAEeenKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDE 1787
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 14133249 659 EGAQNQGKKAEGAQNQGKKAEGAQNQGQKGEGAQNQGKKTEGAQGKKAERSPN 711
Cdd:PTZ00121 1788 EDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKN 1840
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
997-1573 |
1.22e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.60 E-value: 1.22e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 997 NAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQAshreSEEALQKRLDEVSRELCHTQSSHAS 1076
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQA----EEYELLAELARLEQDIARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1077 LRADAEKAQEQQQQMAELHSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQDVQASQA 1156
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1157 EADQQQTRLKELESQVSGLEKEAIELREAV---EQQKVKNNDLREKNWKAMEALATAEQACKEKLHSLTQAKEESEKQLC 1233
Cdd:COG1196 394 AAAELAAQLEELEEAEEALLERLERLEEELeelEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1234 LIEAQTMEALLALLPELSVLAQQNYTEWLQDLKEKGPTLLKHPPAPAEPSSDLASKLREAEETQSTLQAECDQYR----- 1308
Cdd:COG1196 474 LLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALqnivv 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1309 ---SILAETEGMLRDLQKSVEEEEQVWRAKVGAAEEELQKSRVTVKHLEEIVEKLKGELESSDQVREHTLH--LEAELEK 1383
Cdd:COG1196 554 eddEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGrtLVAARLE 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1384 HMAAASAECQNYAKEVAGLRQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKSHVEDGDIAGAPASspeappAEQDP 1463
Cdd:COG1196 634 AALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAE------EEEER 707
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1464 VQLKTQLEWTEAILEDEQTQRQKLTAEFEEAQtsacRLQEELEKLRTAGPLESSETEEASQLKERLEKEKKLTSDLG--- 1540
Cdd:COG1196 708 ELAEAEEERLEEELEEEALEEQLEAEREELLE----ELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGpvn 783
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 14133249 1541 --------RAATRLQELlkTTQ-EQLAREKDTVKKLQEQLEK 1573
Cdd:COG1196 784 llaieeyeELEERYDFL--SEQrEDLEEARETLEEAIEEIDR 823
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
306-1196 |
2.31e-14 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 79.03 E-value: 2.31e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 306 KKVEGAPTQGRKAEGAQNQAKKVEGAQnQGKKAEGAQ--NQGKKGEGAQNQ--GKKAEGAQ--NQGKKAEGAqnqgKKAE 379
Cdd:PTZ00121 1105 KTETGKAEEARKAEEAKKKAEDARKAE-EARKAEDARkaEEARKAEDAKRVeiARKAEDARkaEEARKAEDA----KKAE 1179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 380 GAQN--QGKKAEgaqnQGKKAEGAQnQGKKAEGAQNQGKKVEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKK 457
Cdd:PTZ00121 1180 AARKaeEVRKAE----ELRKAEDAR-KAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEI 1254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 458 AEGAQNQGKKAEGAQNQDKKAEGAQ-NQGRKAEgaqnQGRKAEGAqnqgKKAEgapnQGKKAEGAPNQGKKAEGTPNQGK 536
Cdd:PTZ00121 1255 RKFEEARMAHFARRQAAIKAEEARKaDELKKAE----EKKKADEA----KKAE----EKKKADEAKKKAEEAKKADEAKK 1322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 537 KAEGTPNQGKKAEGTPNQGKKAEGAQNqgKKAEGAQNQGKKAEgtpnqgKKAEGAQNQGKKAEgaqnqgKKAEGAQNQGK 616
Cdd:PTZ00121 1323 KAEEAKKKADAAKKKAEEAKKAAEAAK--AEAEAAADEAEAAE------EKAEAAEKKKEEAK------KKADAAKKKAE 1388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 617 KAEGAQNQGKKAEgaqNQGKKAE---GAQNQGKKVEGAQNQGKKAEGAQNQGKKAEgaqnQGKKAEGAQNQGQKGEGAQN 693
Cdd:PTZ00121 1389 EKKKADEAKKKAE---EDKKKADelkKAAAAKKKADEAKKKAEEKKKADEAKKKAE----EAKKADEAKKKAEEAKKAEE 1461
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 694 QGKKTEgaQGKKAERSPNQGKKGEGAPIQGKKADSVANQGTKVEGITNQGKKAEgspsEGKKAEgspnQGKKADAAanqg 773
Cdd:PTZ00121 1462 AKKKAE--EAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKAD----EAKKAE----EAKKADEA---- 1527
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 774 KKTESAsvqgRNTDVAQSPEAPKQEAPAKKKSGSKKKGEpgppdadgplylpyKTLVSTVGSMVFNEGEAQRLIEIL--S 851
Cdd:PTZ00121 1528 KKAEEA----KKADEAKKAEEKKKADELKKAEELKKAEE--------------KKKAEEAKKAEEDKNMALRKAEEAkkA 1589
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 852 EKAGIIQDTWHKATQKGDPVAILKRqlEEKEKLLATEQEDAAVAKSKLRELNKEMAAEKAKAAAGEAKVKKQLVAREQEi 931
Cdd:PTZ00121 1590 EEARIEEVMKLYEEEKKMKAEEAKK--AEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE- 1666
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 932 tavqARMQASYREHVKEVQQLQGKIRTLQEQLengpntqlarlqqensilrdalnqatsqvesKQNAELAKLRQELSKVS 1011
Cdd:PTZ00121 1667 ----AKKAEEDKKKAEEAKKAEEDEKKAAEAL-------------------------------KKEAEEAKKAEELKKKE 1711
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1012 KELVEKSEAVRQDEQQR--KALEAKAAAFEKQvlqlqashRESEEAlqkRLDEVSRELCHTQSSHASLRADAEKAQEQQQ 1089
Cdd:PTZ00121 1712 AEEKKKAEELKKAEEENkiKAEEAKKEAEEDK--------KKAEEA---KKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV 1780
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1090 QMAELHSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEaLLEAGQARDAQDVQASQAEADQQQTRLKELE 1169
Cdd:PTZ00121 1781 IEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEME-DSAIKEVADSKNMQLEEADAFEKHKFNKNNE 1859
|
890 900 910
....*....|....*....|....*....|....*....
gi 14133249 1170 SQVSG------------LEKEAIELREAVEQQKVKNNDL 1196
Cdd:PTZ00121 1860 NGEDGnkeadfnkekdlKEDDEEEIEEADEIEKIDKDDI 1898
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
943-1576 |
3.16e-14 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 78.42 E-value: 3.16e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 943 REHVKEVQQLQGKIRTLQEQLEngpntQLARLQQENSILRDALNQATSQVESKQNAELAKLRQELSKVSKELVEKSEAVR 1022
Cdd:COG4913 231 VEHFDDLERAHEALEDAREQIE-----LLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1023 QDEQQRKALEAKAAAFEKQVLQLQASHRES----EEALQKRLDEVSRELCHTQSSHASLRADAEKaqeqqqqmaeLHSKL 1098
Cdd:COG4913 306 RLEAELERLEARLDALREELDELEAQIRGNggdrLEQLEREIERLERELEERERRRARLEALLAA----------LGLPL 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1099 QSSEAEvrskceelsglhgqLQEARAENSQLTERIRSIEALLEAGQARDAQDVQASQAEADQQQTRLKELESQVSGLEKE 1178
Cdd:COG4913 376 PASAEE--------------FAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPAR 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1179 AIELREAVEQQ-KVKNNDLR-----------EKNWK-AMEALataeqackekLHSLtqakeesekqlclieAQTMealla 1245
Cdd:COG4913 442 LLALRDALAEAlGLDEAELPfvgelievrpeEERWRgAIERV----------LGGF---------------ALTL----- 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1246 llpelsVLAQQNY---TEWLQDLKEKG-------PTLLKHPPAPAEPSSDLASKLrEAEET--QSTLQAEC-DQYRSILA 1312
Cdd:COG4913 492 ------LVPPEHYaaaLRWVNRLHLRGrlvyervRTGLPDPERPRLDPDSLAGKL-DFKPHpfRAWLEAELgRRFDYVCV 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1313 ETEGMLRDLQKSVEEEEQV------------------W------RAKVGAAEEELQKSRVTVKHLEEIVEKLKGELESSD 1368
Cdd:COG4913 565 DSPEELRRHPRAITRAGQVkgngtrhekddrrrirsrYvlgfdnRAKLAALEAELAELEEELAEAEERLEALEAELDALQ 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1369 QVREHTLHLE---------AELEKHMAAASAECQNYAKEVAGLRQLllesQSQLDAAKSEAQKQSDELALVRQQLSEMKS 1439
Cdd:COG4913 645 ERREALQRLAeyswdeidvASAEREIAELEAELERLDASSDDLAAL----EEQLEELEAELEELEEELDELKGEIGRLEK 720
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1440 HVED--GDIAGAPASSPEAPPAEQDPVQLKTQLEWTEAILED-EQTQRQKLTAEFEEAQTSACRLQEELEKLRTA----G 1512
Cdd:COG4913 721 ELEQaeEELDELQDRLEAAEDLARLELRALLEERFAAALGDAvERELRENLEERIDALRARLNRAEEELERAMRAfnreW 800
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 14133249 1513 PLESSE----TEEASQLKERLEKEKklTSDLGRAATRLQELLKTTQEQLarekdtVKKLQEQLEKAED 1576
Cdd:COG4913 801 PAETADldadLESLPEYLALLDRLE--EDGLPEYEERFKELLNENSIEF------VADLLSKLRRAIR 860
|
|
| Rib_recp_KP_reg |
pfam05104 |
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ... |
59-194 |
2.14e-13 |
|
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.
Pssm-ID: 461548 [Multi-domain] Cd Length: 140 Bit Score: 68.99 E-value: 2.14e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 59 MKETSYEEALANQRKEMAKTHhQKVEKKKKEKTVEKKGKTKKKEEKPNGKIPDHDPAPNVTVLLRE---PVRAPAVAVAP 135
Cdd:pfam05104 1 MKETSYEEALAKQRRELKKTP-TEKEKKKKEKKKEKKKKSKKKEEKPNGKLPESEQADESEEEPREfktPDEAPSAALEP 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 14133249 136 TPVqPPIIVAPVATVPAMPQEKLASSPKDKKKKEKKVAKVEPAVSSVVNSIQVLTSKAA 194
Cdd:pfam05104 80 EPV-PTPVPAPVEPEPAPPSESPAPSPKEKKKKEKKSAKVEPAETPEAVQPKPALEKEE 137
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
850-1571 |
4.61e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.16 E-value: 4.61e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 850 LSEKAGIIQDTWHKATQKgdpVAILKRQLEEKEKLLATEQEDAAVAKSKLRELnkemaaekAKAAAGEAKVKKQLVAREQ 929
Cdd:TIGR02168 279 LEEEIEELQKELYALANE---ISRLEQQKQILRERLANLERQLEELEAQLEEL--------ESKLDELAEELAELEEKLE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 930 EITAVQARMQASYREHVKEVQQLQGKIRTLQEQLENGPNTQLARLQQENSIlRDALNQATSQVESkQNAELAKLRQELSK 1009
Cdd:TIGR02168 348 ELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASL-NNEIERLEARLER-LEDRRERLQQEIEE 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1010 VSKELVE--KSEAVRQDEQQRKALEAKAAAFEKQVLQLqASHRESEEALQKRLDEVSRELCHTQSSHASLRADAEKaqeq 1087
Cdd:TIGR02168 426 LLKKLEEaeLKELQAELEELEEELEELQEELERLEEAL-EELREELEEAEQALDAAERELAQLQARLDSLERLQEN---- 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1088 qqqmaelHSKLQSSEAEVRSKCEELSGLHGQLQE--------------ARAENSQ------LTERIRSIEALLEAGQAR- 1146
Cdd:TIGR02168 501 -------LEGFSEGVKALLKNQSGLSGILGVLSElisvdegyeaaieaALGGRLQavvvenLNAAKKAIAFLKQNELGRv 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1147 --------DAQDVQASQAE-----------------------------------------ADQQQTRLKELESQVS---- 1173
Cdd:TIGR02168 574 tflpldsiKGTEIQGNDREilkniegflgvakdlvkfdpklrkalsyllggvlvvddldnALELAKKLRPGYRIVTldgd 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1174 --------------------GLEKEAIELREAVEQQKVKNNDLReknwKAMEALATAEQACKEKLHSLTQAKEESEKQLC 1233
Cdd:TIGR02168 654 lvrpggvitggsaktnssilERRREIEELEEKIEELEEKIAELE----KALAELRKELEELEEELEQLRKELEELSRQIS 729
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1234 LIEAQTMEALLALLPELSVLAQQNYTewLQDLKEKGPTLLKHPPAPAEPSSDLASKLREAEETQSTLQAECDQYRSILAE 1313
Cdd:TIGR02168 730 ALRKDLARLEAEVEQLEERIAQLSKE--LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDE 807
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1314 TEGMLRDLQK---SVEEEEQVWRAKVGAAEEELQKSRVTVKHLEEIVEKLKGELESSDQV-----REHTLHLE------- 1378
Cdd:TIGR02168 808 LRAELTLLNEeaaNLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELieeleSELEALLNeraslee 887
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1379 --AELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEmkshvedgdiagapasspea 1456
Cdd:TIGR02168 888 alALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSE-------------------- 947
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1457 ppaeqdpvqlKTQLEwteaiLEDEQTQRQKLTAEFEEAQTSACRLQEELEKLrtaGPLESSETEEASQLKERLEKEKKLT 1536
Cdd:TIGR02168 948 ----------EYSLT-----LEEAEALENKIEDDEEEARRRLKRLENKIKEL---GPVNLAAIEEYEELKERYDFLTAQK 1009
|
810 820 830
....*....|....*....|....*....|....*.
gi 14133249 1537 SDLGRAATRLQELL-KTTQEQLAREKDTVKKLQEQL 1571
Cdd:TIGR02168 1010 EDLTEAKETLEEAIeEIDREARERFKDTFDQVNENF 1045
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
942-1229 |
5.35e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.79 E-value: 5.35e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 942 YREHVKEVQQLQGKIRTLQEQLeNGPNTQLARLQQENSILRDALNQATSQVESKQNaELAKLRQELSKVSKELVEKSEAV 1021
Cdd:TIGR02169 669 SRSEPAELQRLRERLEGLKREL-SSLQSELRRIENRLDELSQELSDASRKIGEIEK-EIEQLEQEEEKLKERLEELEEDL 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1022 RQDEQQRKALEAKAAAFEKQVLQLQashrESEEALQKRLDEVSRELchtqsSHASLRADAEKAQEQQQQMAELHSKLQSS 1101
Cdd:TIGR02169 747 SSLEQEIENVKSELKELEARIEELE----EDLHKLEEALNDLEARL-----SHSRIPEIQAELSKLEEEVSRIEARLREI 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1102 EAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARdaqdVQASQAEADQQQTRLKELESQVSGLEKEAIE 1181
Cdd:TIGR02169 818 EQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGK----KEELEEELEELEAALRDLESRLGDLKKERDE 893
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 14133249 1182 LREAVEQQKVKNNDL---REKNWKAMEALATAEQACKEKLHSLTQAKEESE 1229
Cdd:TIGR02169 894 LEAQLRELERKIEELeaqIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE 944
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
982-1372 |
1.47e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 66.22 E-value: 1.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 982 RDALNQATSQVESKQNAE----LAKLRQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEK----------QVLQLQA 1047
Cdd:PRK02224 186 RGSLDQLKAQIEEKEEKDlherLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEErreeletleaEIEDLRE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1048 SHRESE---EALQKRLDEVSRELCHTQSSHASLRADAEKAQEQQQQMAELHSKLQSSEAEVRskcEELSGLHGQLQEARA 1124
Cdd:PRK02224 266 TIAETErerEELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELR---DRLEECRVAAQAHNE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1125 ENSQLTERIRSIEAllEAGQARDAQDVQASQAEADQQQtrLKELESQVSGLEKEAIELREAVEQQKVKNNDLREKNWKAM 1204
Cdd:PRK02224 343 EAESLREDADDLEE--RAEELREEAAELESELEEAREA--VEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELR 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1205 EALATAEQACKEKLHSLTQAKEESEKQLCLIEA---QTMEALLALLPELSVLAQ-----QNYTEWLQDLKEKGPTLLKHP 1276
Cdd:PRK02224 419 EERDELREREAELEATLRTARERVEEAEALLEAgkcPECGQPVEGSPHVETIEEdrervEELEAELEDLEEEVEEVEERL 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1277 PApAEPSSDLASKLREAEETQSTLQAECDQYRSILAETEGMLRDLQKSVEE---EEQVWRAKVGAAEEELQKSRVTVKHL 1353
Cdd:PRK02224 499 ER-AEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAEleaEAEEKREAAAEAEEEAEEAREEVAEL 577
|
410
....*....|....*....
gi 14133249 1354 EEIVEKLKGELESSDQVRE 1372
Cdd:PRK02224 578 NSKLAELKERIESLERIRT 596
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
828-1188 |
5.53e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 5.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 828 TLVSTVGSMVF--NEGEAQRL-----IEILSEKAGIIQDTWHKATQKGDPVAILKRQLEEKEKLLATEQEDAAVAKSKLR 900
Cdd:TIGR02168 653 DLVRPGGVITGgsAKTNSSILerrreIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR 732
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 901 ELNKEMAAEKAKAAAGEAKVKKQLVAREQEITAVQARMQasyrEHVKEVQQLQGKIRTLQEQLEngpntqlaRLQQENSI 980
Cdd:TIGR02168 733 KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLE----EAEEELAEAEAEIEELEAQIE--------QLKEELKA 800
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 981 LRDALNQATSQVeSKQNAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQASHRESEEALQKRL 1060
Cdd:TIGR02168 801 LREALDELRAEL-TLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALL 879
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1061 DEVSrelchtqSSHASLRADAEKAQEQQQQMAELHSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALL 1140
Cdd:TIGR02168 880 NERA-------SLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLT 952
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 14133249 1141 EAGQARDAQDVQASQAEADQQQTRLKELESQVSGLEKEAIELREAVEQ 1188
Cdd:TIGR02168 953 LEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKE 1000
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
943-1571 |
6.59e-10 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 64.09 E-value: 6.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 943 REHVKEVQQLQGKIRTLQEQLENgPNTQLARLQQENSILRDALNQATSQVESKQnAELAKLRQELSKVSKELVEKS---- 1018
Cdd:pfam12128 230 IQAIAGIMKIRPEFTKLQQEFNT-LESAELRLSHLHFGYKSDETLIASRQEERQ-ETSAELNQLLRTLDDQWKEKRdeln 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1019 -------EAVRQDEQQRKALEAKAAAFEKQVLQLQASHRESEEALQKRLDEVSRELCHTQSSHASLRAdaekaqeqqqqm 1091
Cdd:pfam12128 308 gelsaadAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTA------------ 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1092 aelhsKLQSSEAEVRSKC-EELSGLHGQLQEARAENSQLTErirSIEALLEAGQARDAQDVQASQAEADQQQTRLKELES 1170
Cdd:pfam12128 376 -----KYNRRRSKIKEQNnRDIAGIKDKLAKIREARDRQLA---VAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLG 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1171 QVSGLEKEAIELREAVEQQKVkNNDLREKNWKAMEALATAEQACKEKLHSLTQAKEESEKQLCLIEAQTMEALLALLPEL 1250
Cdd:pfam12128 448 ELKLRLNQATATPELLLQLEN-FDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELE 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1251 SVLAQQNYT----------EWLQDL-KEKGPTLLK----HPPAPAEPSSDLAS----KLR-EAEETQSTLQAEcDQYRSI 1310
Cdd:pfam12128 527 LQLFPQAGTllhflrkeapDWEQSIgKVISPELLHrtdlDPEVWDGSVGGELNlygvKLDlKRIDVPEWAASE-EELRER 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1311 LAETEGML---RDLQKSVEEEEQVWRAKVGAAEEELQKSRVTVKHLEEIVEKLkgelesSDQVREHTLHLEAELEKHMAA 1387
Cdd:pfam12128 606 LDKAEEALqsaREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRL------FDEKQSEKDKKNKALAERKDS 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1388 ASAECQNYAKEvagLRQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKShVEDGDIAGAPASSPEAPPAEQDpvQLK 1467
Cdd:pfam12128 680 ANERLNSLEAQ---LKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALD-AQLALLKAAIAARRSGAKAELK--ALE 753
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1468 TQLEWTEAILEDEQTQRQKLTAEFEEAQTSACRL-QEELEKLRTAGPLESSETEEASQLKERLEKEKKLTSDLGRAATRL 1546
Cdd:pfam12128 754 TWYKRDLASLGVDPDVIAKLKREIRTLERKIERIaVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARL 833
|
650 660
....*....|....*....|....*
gi 14133249 1547 QELLKTTQEQLAREKDTVKKLQEQL 1571
Cdd:pfam12128 834 IADTKLRRAKLEMERKASEKQQVRL 858
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
928-1381 |
8.10e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 63.91 E-value: 8.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 928 EQEITAVQARMQA-----SYREHVKEVQQLQGKIRTLQEQLENGPNT------QLARLQQENSILRDALNQ--ATSQVES 994
Cdd:PRK02224 227 EQREQARETRDEAdevleEHEERREELETLEAEIEDLRETIAETEREreelaeEVRDLRERLEELEEERDDllAEAGLDD 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 995 KQNAELAKLRQELSKVSKELVEKSEAVRQDeQQRKALEAKAAAFEKQVLQLQASH-RESEEALQKRLDEVSRELCHTQSS 1073
Cdd:PRK02224 307 ADAEAVEARREELEDRDEELRDRLEECRVA-AQAHNEEAESLREDADDLEERAEElREEAAELESELEEAREAVEDRREE 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1074 HASLRADAEKAQEQQQQMAELHSKLQSSEAEVRskcEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARD-AQDVQ 1152
Cdd:PRK02224 386 IEELEEEIEELRERFGDAPVDLGNAEDFLEELR---EERDELREREAELEATLRTARERVEEAEALLEAGKCPEcGQPVE 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1153 ASQ-----AEADQQ----QTRLKELESQVSGLEKEAIELREAVEQQKvKNNDLREKNWKAMEALATAE---QACKEKLHS 1220
Cdd:PRK02224 463 GSPhvetiEEDRERveelEAELEDLEEEVEEVEERLERAEDLVEAED-RIERLEERREDLEELIAERRetiEEKRERAEE 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1221 LTQAKEE----------------SEKQLCLIEAQTMEALLALLPEL---------SVLAQQNYTEWLQDLKEKGPTLlkh 1275
Cdd:PRK02224 542 LRERAAEleaeaeekreaaaeaeEEAEEAREEVAELNSKLAELKERieslerirtLLAAIADAEDEIERLREKREAL--- 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1276 ppapAEPSSDLASKLREAEETQSTLQAECDQYR------------SILAETEGMLRDLqksvEEEEQVWRAKVGAAE--- 1340
Cdd:PRK02224 619 ----AELNDERRERLAEKRERKRELEAEFDEARieearedkeraeEYLEQVEEKLDEL----REERDDLQAEIGAVEnel 690
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 14133249 1341 EELQKSRVTVKHLEEIVEKLKGELESSDQVREHTLHLEAEL 1381
Cdd:PRK02224 691 EELEELRERREALENRVEALEALYDEAEELESMYGDLRAEL 731
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
940-1213 |
2.40e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.39 E-value: 2.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 940 ASYREHVKEVQQLQGKIRTLQEQLEnGPNTQLARLQQENSILRDALNQATSQVESKQNAELAKLRQELSKVSKELVEKSE 1019
Cdd:TIGR02169 230 KEKEALERQKEAIERQLASLEEELE-KLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLER 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1020 AVRQDEQQRKALEAKAAAFEKQVLQLQASHRESEEAL---QKRLDEVSRELCHTQSSHASLRADAEKAQEQQQQMAELHS 1096
Cdd:TIGR02169 309 SIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIeeeRKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1097 KLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQDVQASQAEADQQQTRLKELESQVSGLE 1176
Cdd:TIGR02169 389 DYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYE 468
|
250 260 270
....*....|....*....|....*....|....*..
gi 14133249 1177 KEAIELREavEQQKVkNNDLREKNWKAMEALATAEQA 1213
Cdd:TIGR02169 469 QELYDLKE--EYDRV-EKELSKLQRELAEAEAQARAS 502
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
247-489 |
2.99e-08 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 58.85 E-value: 2.99e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 247 KAEGTPNQGKKTEGTPnqGKKAEGTPNQGKKAEGTPNQGK-KAEG---AQNQGKKVDTTPNQGKKVEgaptqgRKAEGAQ 322
Cdd:TIGR00927 641 TGERTGEEGERPTEAE--GENGEESGGEAEQEGETETKGEnESEGeipAERKGEQEGEGEIEAKEAD------HKGETEA 712
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 323 NQAKKVEGAQNQGKKAEGAQNQGKKGEGAQNQGK-KAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGA 401
Cdd:TIGR00927 713 EEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEgEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMK 792
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 402 QNQGK----KAEGAQNQGKKVEGAQNQGKKAEGAQNQGKKAE---GAQNQGKKAEGaqNQGKKAEGAQNQGKKAEGAQNQ 474
Cdd:TIGR00927 793 GDEGAegkvEHEGETEAGEKDEHEGQSETQADDTEVKDETGEqelNAENQGEAKQD--EKGVDGGGGSDGGDSEEEEEEE 870
|
250
....*....|....*
gi 14133249 475 DKKAEGAQNQGRKAE 489
Cdd:TIGR00927 871 EEEEEEEEEEEEEEE 885
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
987-1576 |
3.24e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.54 E-value: 3.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 987 QATSQVESK---QNAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEA---KAAAFEKQVLQLQASHRESEE---ALQ 1057
Cdd:PRK03918 186 KRTENIEELikeKEKELEEVLREINEISSELPELREELEKLEKEVKELEElkeEIEELEKELESLEGSKRKLEEkirELE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1058 KRLDEVSRELchtqsshaslradaekaqeqqqqmaelhSKLQSSEAEVrskcEELSGLHGQLQEARAENSQLTERIRSIE 1137
Cdd:PRK03918 266 ERIEELKKEI----------------------------EELEEKVKEL----KELKEKAEEYIKLSEFYEEYLDELREIE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1138 ALLEAGQARdAQDVQASQAEADQQQTRLKELESQVSGLEKEAIELREAVEQ-QKVKNNDLREKNWKAMEALATAEQAcKE 1216
Cdd:PRK03918 314 KRLSRLEEE-INGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELyEEAKAKKEELERLKKRLTGLTPEKL-EK 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1217 KLHSLTQAKEESEKQLCLIEAQTMEALLALLPELSVLaqqnytEWLQDLKEKGPTllkhppAPAEPSSDlasklrEAEET 1296
Cdd:PRK03918 392 ELEELEKAKEEIEEEISKITARIGELKKEIKELKKAI------EELKKAKGKCPV------CGRELTEE------HRKEL 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1297 QSTLQAECDQYRSILAETEGMLRDLQKSVEEEEqvwraKVGAAEEELQKSRVTVKHLEEIVEKLKG----ELESSDQVRE 1372
Cdd:PRK03918 454 LEEYTAELKRIEKELKEIEEKERKLRKELRELE-----KVLKKESELIKLKELAEQLKELEEKLKKynleELEKKAEEYE 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1373 HTLHLEAELEKHMAAASAEcqnyAKEVAGLRQLLLESQSQLDAAKSEAQKQSDELA-LVRQQLSEMKSHVEdgdiagapa 1451
Cdd:PRK03918 529 KLKEKLIKLKGEIKSLKKE----LEKLEELKKKLAELEKKLDELEEELAELLKELEeLGFESVEELEERLK--------- 595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1452 sspEAPPAEQDPVQLK---TQLEWTEAILEDEQTQRQKLTAEFEEAQTSACRLQEELEKLRTAGPLEssETEEASQLKER 1528
Cdd:PRK03918 596 ---ELEPFYNEYLELKdaeKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEE--EYEELREEYLE 670
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 14133249 1529 LEKE-KKLTSDLGRAATRLQEL------LKTTQEQLAREKDTVKKLQEQLEKAED 1576
Cdd:PRK03918 671 LSRElAGLRAELEELEKRREEIkktlekLKEELEEREKAKKELEKLEKALERVEE 725
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
548-826 |
5.40e-08 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 58.08 E-value: 5.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 548 AEGTPNQGKKAEgAQNQGKKAEGAQNQGKKAEGtPNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKK 627
Cdd:TIGR00927 626 ALGDLSKGDVAE-AEHTGERTGEEGERPTEAEG-ENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKE 703
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 628 AEgaqnqgKKAEGAQNQGKKVEGAQNQGKKAEG-AQNQGKKAEGAQNQGKKAEGAQNQGQKGEGAQNQGKKTEGAQGKKA 706
Cdd:TIGR00927 704 AD------HKGETEAEEVEHEGETEAEGTEDEGeIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKED 777
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 707 ERSpNQGKKGEGAPIQGkkaDSVANQGTKVEGITNQGKKAEGSPSEGKKAEGSPNQGKKADA---AANQG--KKTESASV 781
Cdd:TIGR00927 778 EDE-GEIQAGEDGEMKG---DEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQelnAENQGeaKQDEKGVD 853
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 14133249 782 QGRNTDVAQSPEAPKQEAPAKKKSGSKKKGEPGPPDADGPLYLPY 826
Cdd:TIGR00927 854 GGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEW 898
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
991-1582 |
7.28e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.84 E-value: 7.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 991 QVESKQNAELAKLRQELSKVSK----ELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQASHRESEEALQKRLDEVSRE 1066
Cdd:PTZ00121 1177 KAEAARKAEEVRKAEELRKAEDarkaEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRK 1256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1067 -----LCHTQSSHASLRADAEKAQEQQQQMAELHSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLE 1141
Cdd:PTZ00121 1257 feearMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKK 1336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1142 AGQARDAQDvQASQAEADQQQTRLKELESQVSGLEKEAIELREAVEQQKVKNNDLReknwKAMEALATAEQAcKEKLHSL 1221
Cdd:PTZ00121 1337 KAEEAKKAA-EAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK----KADEAKKKAEED-KKKADEL 1410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1222 TQAKEESEKQlclIEAQTMEALLALLPELSVLAQQNYTEwlQDLKEKGPTLLKhppapAEPSSDLASKLREAEETQSTLQ 1301
Cdd:PTZ00121 1411 KKAAAAKKKA---DEAKKKAEEKKKADEAKKKAEEAKKA--DEAKKKAEEAKK-----AEEAKKKAEEAKKADEAKKKAE 1480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1302 A--ECDQYRSILAETEGMLRDLQKSVEEE---EQVWRAKVGAAEEELQKSRVTVK--HLEEIVEKLKG-------ELESS 1367
Cdd:PTZ00121 1481 EakKADEAKKKAEEAKKKADEAKKAAEAKkkaDEAKKAEEAKKADEAKKAEEAKKadEAKKAEEKKKAdelkkaeELKKA 1560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1368 DQVREHTLHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQldAAKSEAQKQSDELALVRQQL---SEMKSHVEDG 1444
Cdd:PTZ00121 1561 EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEK--KMKAEEAKKAEEAKIKAEELkkaEEEKKKVEQL 1638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1445 DIAGAPA--SSPEAPPAEQDPVQLKTQLEWTEailEDEQTQRQKLTAEFEEAQTSACRLQEELEKLRTAGPLESSETEE- 1521
Cdd:PTZ00121 1639 KKKEAEEkkKAEELKKAEEENKIKAAEEAKKA---EEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEk 1715
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 14133249 1522 --ASQLKERLEKEKKLTSDLGRAAtrlqELLKTTQEQLAREKDTVKKLQ----EQLEKAEDGSSSKE 1582
Cdd:PTZ00121 1716 kkAEELKKAEEENKIKAEEAKKEA----EEDKKKAEEAKKDEEEKKKIAhlkkEEEKKAEEIRKEKE 1778
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1096-1578 |
9.19e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.97 E-value: 9.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1096 SKLQSSEAEVRSKCE--ELSGLHGQLQEARAENSQLTERIRSIEALLEAGQAR--DAQDVQASQAEADQQQTRLK----E 1167
Cdd:PRK02224 183 SDQRGSLDQLKAQIEekEEKDLHERLNGLESELAELDEEIERYEEQREQARETrdEADEVLEEHEERREELETLEaeieD 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1168 LESQVSGLEKEAIELREAVEQQKVKNNDLREKNwkaMEALATAE------QACKEKLHSLTQAKEESEKQLclieaqtme 1241
Cdd:PRK02224 263 LRETIAETEREREELAEEVRDLRERLEELEEER---DDLLAEAGlddadaEAVEARREELEDRDEELRDRL--------- 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1242 allallpELSVLAQQNYTEWLQDLKEKgptllkhppapaepSSDLASKLREAEETQSTLQAECDQYRSILAETEGMLRDL 1321
Cdd:PRK02224 331 -------EECRVAAQAHNEEAESLRED--------------ADDLEERAEELREEAAELESELEEAREAVEDRREEIEEL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1322 QKSVEEEeqvwRAKVGAAEEELQKSRvtvKHLEEIVEKLkgelessDQVREHTLHLEAELekhmaaasaecQNYAKEVAG 1401
Cdd:PRK02224 390 EEEIEEL----RERFGDAPVDLGNAE---DFLEELREER-------DELREREAELEATL-----------RTARERVEE 444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1402 LRQLLLESQ--------------SQLDAAKSEAQKQSDELALVRQQLSEMKSHVEDGDIAGAPASSPE-----APPAEQD 1462
Cdd:PRK02224 445 AEALLEAGKcpecgqpvegsphvETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIErleerREDLEEL 524
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1463 PVQLKTQLEWTEAILEDEQTQRQKLTAEFEEAQTSACRLQEELEKLR-TAGPLESSETEEASQLK--ERLEKEKKLTSDL 1539
Cdd:PRK02224 525 IAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAReEVAELNSKLAELKERIEslERIRTLLAAIADA 604
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 14133249 1540 GRAATRLQELLKTTQEQLAREKDTVKKLQE---QLEKAEDGS 1578
Cdd:PRK02224 605 EDEIERLREKREALAELNDERRERLAEKRErkrELEAEFDEA 646
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
358-619 |
1.62e-07 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 56.54 E-value: 1.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 358 AEGAQNQGKKAEgAQNQGKKAEGAQNQGKKAEGAQNQGKKAEgAQNQGKKAEGAQNQGKKVEGAQNQGKKAEGAQNQGK- 436
Cdd:TIGR00927 626 ALGDLSKGDVAE-AEHTGERTGEEGERPTEAEGENGEESGGE-AEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKe 703
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 437 ---KAEGAQNQGKKAEGAQNQGKKAEG-AQNQGKKAEGAQNQDKKAEGAQNQGRKAEGAQNQGRKAEGAQNQGKKAEGAP 512
Cdd:TIGR00927 704 adhKGETEAEEVEHEGETEAEGTEDEGeIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEI 783
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 513 NQGKKAEGAPNQGKKAEGtpnqgkKAEGTPNQGKKAEGTPNQGKKAEGAQNQGKKAE---GAQNQGKKAEGtpNQGKKAE 589
Cdd:TIGR00927 784 QAGEDGEMKGDEGAEGKV------EHEGETEAGEKDEHEGQSETQADDTEVKDETGEqelNAENQGEAKQD--EKGVDGG 855
|
250 260 270
....*....|....*....|....*....|
gi 14133249 590 GAQNQGKKAEGAQNQGKKAEGAQNQGKKAE 619
Cdd:TIGR00927 856 GGSDGGDSEEEEEEEEEEEEEEEEEEEEEE 885
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
546-1231 |
1.87e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.30 E-value: 1.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 546 KKAEGTPNQGKKAEGAQNQGKKAEGAQnQGKKAEGT--PNQGKKAEGAQNQ--GKKAEGAQ--NQGKKAEGAQ--NQGKK 617
Cdd:PTZ00121 1105 KTETGKAEEARKAEEAKKKAEDARKAE-EARKAEDArkAEEARKAEDAKRVeiARKAEDARkaEEARKAEDAKkaEAARK 1183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 618 AEGAQ--NQGKKAEGAQnQGKKAEGAQNQGKKVEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQN--QGQKGEGAQN 693
Cdd:PTZ00121 1184 AEEVRkaEELRKAEDAR-KAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNneEIRKFEEARM 1262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 694 QGKKTEGAQGKKAE-RSPNQGKKGEgapiQGKKADSV--ANQGTKVEGITNQGKKAEGSPSEGKKAEgspNQGKKADAAA 770
Cdd:PTZ00121 1263 AHFARRQAAIKAEEaRKADELKKAE----EKKKADEAkkAEEKKKADEAKKKAEEAKKADEAKKKAE---EAKKKADAAK 1335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 771 NQGKKTESASVQGRNTDVAQSPEAPKQEAPAKKKSGSKKKGEPGPPDAdgplylpyktlvSTVGSMVFNEGEAQRLIEIL 850
Cdd:PTZ00121 1336 KKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAA------------KKKAEEKKKADEAKKKAEED 1403
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 851 SEKAgiiqDTWHKATQKGDPVAILKRQLEEKEKllATEQEDAAVAKSKLRELNKEMAAEKAKAAAGEAKVKKQlVAREQE 930
Cdd:PTZ00121 1404 KKKA----DELKKAAAAKKKADEAKKKAEEKKK--ADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK-KADEAK 1476
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 931 ITAVQARMQASYREHVKEVQQLQGKIRTLQEQLENGPNTQLARLQQENSILRDAlnqatsqvESKQNAELAKLRQELSKV 1010
Cdd:PTZ00121 1477 KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKA--------EEAKKADEAKKAEEKKKA 1548
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1011 skELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQAshRESEEALQKRLDEVSRELCHTQSSHAslradaekaqeqqqq 1090
Cdd:PTZ00121 1549 --DELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKA--EEAKKAEEARIEEVMKLYEEEKKMKA--------------- 1609
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1091 MAELHSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQDVQASQAEADQQQTRLKELES 1170
Cdd:PTZ00121 1610 EEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK 1689
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 14133249 1171 QVSGLEKEAIELREAVEQQKVKNNDLREKnwkamEALATAEQACKEKLHSLTQAKEESEKQ 1231
Cdd:PTZ00121 1690 AAEALKKEAEEAKKAEELKKKEAEEKKKA-----EELKKAEEENKIKAEEAKKEAEEDKKK 1745
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
438-699 |
2.11e-07 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 56.16 E-value: 2.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 438 AEGAQNQGKKAEgAQNQGKKAEGAQNQGKKAEGaQNQDKKAEGAQNQGRKAEGAQNqgrKAEGAQNQGKKAEGAPNQGKK 517
Cdd:TIGR00927 626 ALGDLSKGDVAE-AEHTGERTGEEGERPTEAEG-ENGEESGGEAEQEGETETKGEN---ESEGEIPAERKGEQEGEGEIE 700
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 518 AEGAPNQGKKAEGTPNQGkkaEGTPNQGKKAEGTPNQGKKAEGAQNQGK-KAEGAQNQGKKAEGTPNQGKKAEGAQNQGK 596
Cdd:TIGR00927 701 AKEADHKGETEAEEVEHE---GETEAEGTEDEGEIETGEEGEEVEDEGEgEAEGKHEVETEGDRKETEHEGETEAEGKED 777
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 597 KAEGAQNQGKKAEGAQNQGK----KAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKVE---GAQNQGKKAEGaqNQGKKAE 669
Cdd:TIGR00927 778 EDEGEIQAGEDGEMKGDEGAegkvEHEGETEAGEKDEHEGQSETQADDTEVKDETGEqelNAENQGEAKQD--EKGVDGG 855
|
250 260 270
....*....|....*....|....*....|
gi 14133249 670 GAQNQGKKAEGAQNQGQKGEGAQNQGKKTE 699
Cdd:TIGR00927 856 GGSDGGDSEEEEEEEEEEEEEEEEEEEEEE 885
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
497-717 |
2.88e-07 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 55.39 E-value: 2.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 497 KAEGAQNQgKKAEGAPNQGKKAEGAPnqGKKAEGTPNQGKKAEGTPNQGK-KAEGTPNQGKKAEGAQNQGKKAEGAQNQG 575
Cdd:TIGR00927 632 KGDVAEAE-HTGERTGEEGERPTEAE--GENGEESGGEAEQEGETETKGEnESEGEIPAERKGEQEGEGEIEAKEADHKG 708
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 576 -------KKAEGTPNQGKKAEG-AQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKK 647
Cdd:TIGR00927 709 eteaeevEHEGETEAEGTEDEGeIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGED 788
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 14133249 648 VEGAQNQGK----KAEGAQNQGKKAEGAQNQGKKAEGAQNQGQKGE---GAQNQGKKTEGAQGKKAERSPNQGKKGE 717
Cdd:TIGR00927 789 GEMKGDEGAegkvEHEGETEAGEKDEHEGQSETQADDTEVKDETGEqelNAENQGEAKQDEKGVDGGGGSDGGDSEE 865
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1007-1575 |
2.89e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.46 E-value: 2.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1007 LSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVlqlqashreseEALQKRLDEVSRELCHTQSSHASLRADAEKAQE 1086
Cdd:PRK03918 167 LGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKEL-----------EEVLREINEISSELPELREELEKLEKEVKELEE 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1087 QQQQMAELHSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEAL-----------------------LEAG 1143
Cdd:PRK03918 236 LKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELkekaeeyiklsefyeeyldelreIEKR 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1144 QAR---DAQDVQASQAEADQQQTRLKELESQVSGLEKEAIELREAVEQ-QKVKNNDLREKNWKAMEALATAEQAcKEKLH 1219
Cdd:PRK03918 316 LSRleeEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELyEEAKAKKEELERLKKRLTGLTPEKL-EKELE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1220 SLTQAKEESEKQLCLIEAQTMEALLALLPELSVLaqqnytEWLQDLKEKGPTllkhppAPAEPSSDlasklrEAEETQST 1299
Cdd:PRK03918 395 ELEKAKEEIEEEISKITARIGELKKEIKELKKAI------EELKKAKGKCPV------CGRELTEE------HRKELLEE 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1300 LQAECDQYRSILAETEGMLRDLQKSVEEEEqvwraKVGAAEEELQKSRVTVKHLEEIVEKLKG----ELESSDQVREHTL 1375
Cdd:PRK03918 457 YTAELKRIEKELKEIEEKERKLRKELRELE-----KVLKKESELIKLKELAEQLKELEEKLKKynleELEKKAEEYEKLK 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1376 HLEAELEKHMAAASAEcqnyAKEVAGLRQLLLESQSQLDAAKSEAQKQSDELA-LVRQQLSEMKSHVEdgdiagapassp 1454
Cdd:PRK03918 532 EKLIKLKGEIKSLKKE----LEKLEELKKKLAELEKKLDELEEELAELLKELEeLGFESVEELEERLK------------ 595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1455 EAPPAEQDPVQLK---TQLEWTEAILEDEQTQRQKLTAEFEEAQTSACRLQEELEKLRTAGPLEssETEEASQLKERLEK 1531
Cdd:PRK03918 596 ELEPFYNEYLELKdaeKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEE--EYEELREEYLELSR 673
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 14133249 1532 E-KKLTSDLGRAATRLQELLKTTqEQLAREKDTVKKLQEQLEKAE 1575
Cdd:PRK03918 674 ElAGLRAELEELEKRREEIKKTL-EKLKEELEEREKAKKELEKLE 717
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
398-659 |
4.08e-07 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 55.00 E-value: 4.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 398 AEGAQNQGKKAEgAQNQGKKVEGAQNQGKKAEGAQNQGKKAEgAQNQGKKAEGAQNqgkKAEGAQNQGKKAEGAQNQDKK 477
Cdd:TIGR00927 626 ALGDLSKGDVAE-AEHTGERTGEEGERPTEAEGENGEESGGE-AEQEGETETKGEN---ESEGEIPAERKGEQEGEGEIE 700
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 478 AEGAQNQGRKAEGA--QNQGRKAEGAQNQGKKAEGAPNQGKKAEGaPNQGKKAEGTPNQGKKAEGTPNQGKKAEGTPNQG 555
Cdd:TIGR00927 701 AKEADHKGETEAEEveHEGETEAEGTEDEGEIETGEEGEEVEDEG-EGEAEGKHEVETEGDRKETEHEGETEAEGKEDED 779
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 556 KKAEGAQNQGK-KAEGAQNQGKKAEGTPNQGKKAEGAQNQGKKAEGAQNQGKKAE---GAQNQGKKAEGaqNQGKKAEGA 631
Cdd:TIGR00927 780 EGEIQAGEDGEmKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEqelNAENQGEAKQD--EKGVDGGGG 857
|
250 260
....*....|....*....|....*...
gi 14133249 632 QNQGKKAEGAQNQGKKVEGAQNQGKKAE 659
Cdd:TIGR00927 858 SDGGDSEEEEEEEEEEEEEEEEEEEEEE 885
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
267-509 |
5.12e-07 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 54.62 E-value: 5.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 267 KAEGTPNQGKKAEGTPnqGKKAEGAQNQGKKVDTTPNQGK-KVEGAPTQGRKAEGAQNQAKKVEGAQNQGKKAEGaqnQG 345
Cdd:TIGR00927 641 TGERTGEEGERPTEAE--GENGEESGGEAEQEGETETKGEnESEGEIPAERKGEQEGEGEIEAKEADHKGETEAE---EV 715
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 346 KKGEGAQNQGKKAEG-AQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKVEGAQNQ 424
Cdd:TIGR00927 716 EHEGETEAEGTEDEGeIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDE 795
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 425 GK----KAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAE---GAQNQGKKAEGAQNQDKKAEGAQNQGRKAEGAQNQGRK 497
Cdd:TIGR00927 796 GAegkvEHEGETEAGEKDEHEGQSETQADDTEVKDETGEqelNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEE 875
|
250
....*....|..
gi 14133249 498 AEGAQNQGKKAE 509
Cdd:TIGR00927 876 EEEEEEEEEEEE 887
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1310-1574 |
6.15e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 6.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1310 ILAETEGMLRDLQKSVEEEEQ--------------VWRAKVGAAEEELQKSRVTVKHLEEIVEKLKGELESSDQVREHTL 1375
Cdd:TIGR02168 194 ILNELERQLKSLERQAEKAERykelkaelrelelaLLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1376 HLEAELEKHMAAASAECQNYAKEVAGL--------------RQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKSHV 1441
Cdd:TIGR02168 274 LEVSELEEEIEELQKELYALANEISRLeqqkqilrerlanlERQLEELEAQLEELESKLDELAEELAELEEKLEELKEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1442 EDGDIAGApASSPEAPPAEQDPVQLKTQLEWTEAILEDEQTQRQKLTAEFEEAQTSACRLQEELEKLRTAGPLESSETEE 1521
Cdd:TIGR02168 354 ESLEAELE-ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE 432
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 14133249 1522 A--SQLKERLEKEKKLTSDLGRAATRLQELLKTTQEQLAREKDTVKKLQEQLEKA 1574
Cdd:TIGR02168 433 AelKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1097-1561 |
7.95e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.00 E-value: 7.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1097 KLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAgqARDAQDVQASQAEADQQQTRLKELESQVSGLE 1176
Cdd:COG4717 82 EAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL--LPLYQELEALEAELAELPERLEELEERLEELR 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1177 KEAIELREAVEQQKVKNNDLREKNWKAMEALATAEQACKEKLHSLTQAKEESEKQLCLIEAQTMEALLALLPELSVLAQQ 1256
Cdd:COG4717 160 ELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAA 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1257 NYTEWLQDlkekgptllkhppapAEPSSDLASKLREAEETQSTLQAECDQYRSILAETEGMLRDLQKSVEEEEQVWRAKV 1336
Cdd:COG4717 240 ALEERLKE---------------ARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEA 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1337 GAAEEELQKSRVTVKHLEEIVEKLKGELESSDQVREHTLHLEAEL-----EKHMAAASAECQNYAKEvagLRQLLLESQS 1411
Cdd:COG4717 305 EELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELqellrEAEELEEELQLEELEQE---IAALLAEAGV 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1412 QLDAAKSEAQKQSDELALVRQQLSEMKSHVEdgdiagAPASSPEAPPAEQDPVQLKTQLEwteaileDEQTQRQKLTAEF 1491
Cdd:COG4717 382 EDEEELRAALEQAEEYQELKEELEELEEQLE------ELLGELEELLEALDEEELEEELE-------ELEEELEELEEEL 448
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1492 EEAQTSACRLQEELEKLRTAGPLessetEEASQLKERLEKEKKLTSDLGRAATRLQELLKTTQEQLAREK 1561
Cdd:COG4717 449 EELREELAELEAELEQLEEDGEL-----AELLQELEELKAELRELAEEWAALKLALELLEEAREEYREER 513
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
351-628 |
8.36e-07 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 54.23 E-value: 8.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 351 AQNQGKKAEGAQNQGKKAEGAQNQGKKAEgAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKVEgAQNQGKKAEG 430
Cdd:TIGR00927 638 AEHTGERTGEEGERPTEAEGENGEESGGE-AEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEAD-HKGETEAEEV 715
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 431 AQNQGKKAEGAQNQGKkaegAQNQGKKAEGAQNQGKKAEGAQNQDKKAEGAQNQGRKAEGAQNQGRKAEGAQNQGKKAEG 510
Cdd:TIGR00927 716 EHEGETEAEGTEDEGE----IETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEM 791
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 511 APNQGKKAEGapnqgkKAEGTPNQGKKAEGTPNQGKKAEGTPNQGKKAE---GAQNQGKKAEGAQNQGKKAEGTPNQGKK 587
Cdd:TIGR00927 792 KGDEGAEGKV------EHEGETEAGEKDEHEGQSETQADDTEVKDETGEqelNAENQGEAKQDEKGVDGGGGSDGGDSEE 865
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 14133249 588 AEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKA 628
Cdd:TIGR00927 866 EEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQKQA 906
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1110-1579 |
8.65e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.15 E-value: 8.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1110 EELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQDVQASQAEADQQQTRLKELESQVSGLEKEAIELREAVEQQ 1189
Cdd:COG4913 235 DDLERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1190 KVKNNDLREKNWKAMEALATA----EQACKEKLHSLTQAKEESEKQLCLIEAQTMEALLALLPELSVLAQQNytEWLQDL 1265
Cdd:COG4913 315 EARLDALREELDELEAQIRGNggdrLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALR--AEAAAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1266 KEKGPTLLKhppAPAEPSSDLASKLREAEETQSTLQAECDQYRS----ILAETEGMLRDLQKS----------------V 1325
Cdd:COG4913 393 LEALEEELE---ALEEALAEAEAALRDLRRELRELEAEIASLERrksnIPARLLALRDALAEAlgldeaelpfvgelieV 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1326 EEEEQVWRakvGAAEEEL-------------------------QKSRVTVKHLEEIVEKLKGELESSD------QVREHT 1374
Cdd:COG4913 470 RPEEERWR---GAIERVLggfaltllvppehyaaalrwvnrlhLRGRLVYERVRTGLPDPERPRLDPDslagklDFKPHP 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1375 LH--LEAELEKHMA---------------AASAECQNYAKEVAG--------LRQLLL--ESQSQLDAAKSEAQKQSDEL 1427
Cdd:COG4913 547 FRawLEAELGRRFDyvcvdspeelrrhprAITRAGQVKGNGTRHekddrrriRSRYVLgfDNRAKLAALEAELAELEEEL 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1428 ALVRQQLSEMKSHVEdgdiagapasspeappaeqdpvQLKTQLEWTEAILEDEQTQRQKLTAEFEEAQtsacrLQEELEK 1507
Cdd:COG4913 627 AEAEERLEALEAELD----------------------ALQERREALQRLAEYSWDEIDVASAEREIAE-----LEAELER 679
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 14133249 1508 LRTAGPlesseteEASQLKERLEKEKKLTSDLGRAATRLQELLKTTQEQLAREKDTVKKLQEQLEKAEDGSS 1579
Cdd:COG4913 680 LDASSD-------DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLAR 744
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
284-504 |
1.04e-06 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 53.37 E-value: 1.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 284 QGKKAEGAQNQGKKVDTTPNQGKKVEGAPTQGRKAEGAQNQAKKVE---GAQNQGKKAEGAQNQGKKGEGAQNQGKKAEG 360
Cdd:PRK12678 59 RGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAapaARAAAAAAAEAASAPEAAQARERRERGEAAR 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 361 AQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKVEGAQNQGKKAEGAQNQGKKAEG 440
Cdd:PRK12678 139 RGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREER 218
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 14133249 441 AQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQDKKAEGAQNQGRKAEGAQNQGRKAEGAQNQ 504
Cdd:PRK12678 219 GRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNE 282
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
278-529 |
1.29e-06 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 53.46 E-value: 1.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 278 AEGTPNQGKKAEgAQNQGkkvDTTPNQGKKVEGAPtqGRKAEGAQNQAKKvEGAQNQG--KKAEGAQNQGKKGEGAQNQG 355
Cdd:TIGR00927 626 ALGDLSKGDVAE-AEHTG---ERTGEEGERPTEAE--GENGEESGGEAEQ-EGETETKgeNESEGEIPAERKGEQEGEGE 698
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 356 KKAEGAQNQGKKAEGAQNQGkkaEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGkKVEGAQNQGKKAEGAQNQG 435
Cdd:TIGR00927 699 IEAKEADHKGETEAEEVEHE---GETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEV-ETEGDRKETEHEGETEAEG 774
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 436 KKAEGaQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQDKKAEGAQNQGRKAEGAQNQGRKAEGAQNQGKKAEGapNQG 515
Cdd:TIGR00927 775 KEDED-EGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQD--EKG 851
|
250
....*....|....
gi 14133249 516 KKAEGAPNQGKKAE 529
Cdd:TIGR00927 852 VDGGGGSDGGDSEE 865
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
227-479 |
1.93e-06 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 52.69 E-value: 1.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 227 KAEGTQNQSKKAEGAPnqGRKAEGTPNQGKKTEGTPNQGK-KAEGTPNQGKKAEGTPNQGKKAEGAQNQGkkvDTTPNQG 305
Cdd:TIGR00927 641 TGERTGEEGERPTEAE--GENGEESGGEAEQEGETETKGEnESEGEIPAERKGEQEGEGEIEAKEADHKG---ETEAEEV 715
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 306 KKVEGAPTQGRKAEG-AQNQAKKVEGAQNQGKKAEGAQNQGKKGEGAQNQGKKAEGAQNQGKKAEGAQNQGkkaEGAQNQ 384
Cdd:TIGR00927 716 EHEGETEAEGTEDEGeIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAG---EDGEMK 792
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 385 GKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKVEGAQNQGKKAEGAQNQGKKAEGaqNQGKKAEGAQNQGKKAEGAQNQ 464
Cdd:TIGR00927 793 GDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQD--EKGVDGGGGSDGGDSEEEEEEE 870
|
250
....*....|....*
gi 14133249 465 GKKAEGAQNQDKKAE 479
Cdd:TIGR00927 871 EEEEEEEEEEEEEEE 885
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
388-658 |
2.33e-06 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 52.69 E-value: 2.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 388 AEGAQNQGKKAEgAQNQGKKAEGAQNQGKKVEGAQNQGKKAEgAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGK- 466
Cdd:TIGR00927 626 ALGDLSKGDVAE-AEHTGERTGEEGERPTEAEGENGEESGGE-AEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKe 703
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 467 ---KAEGAQNQDKKAEGAQNQGRKAEGAQNQGRKAEGAQNQGK-KAEGAPNQGKKAEGAPNQGKKAEGTPNQGKKAEGTP 542
Cdd:TIGR00927 704 adhKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEgEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEI 783
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 543 NQGKKAEGTPNQGK----KAEGAQNQGKKAEGAQNQGKKAEGTPNQGKKAE---GAQNQGKKAEGAQNQGKKAEGAQNQG 615
Cdd:TIGR00927 784 QAGEDGEMKGDEGAegkvEHEGETEAGEKDEHEGQSETQADDTEVKDETGEqelNAENQGEAKQDEKGVDGGGGSDGGDS 863
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 14133249 616 KKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKVEGAQNQGKKA 658
Cdd:TIGR00927 864 EEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQKQA 906
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
378-649 |
2.45e-06 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 52.69 E-value: 2.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 378 AEGAQNQGKKAEgAQNQGKKAEGAQNQGKKAEGAQNQGKKVEgAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKK 457
Cdd:TIGR00927 626 ALGDLSKGDVAE-AEHTGERTGEEGERPTEAEGENGEESGGE-AEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKE 703
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 458 AEgaqnqgKKAEGAQNQDKKAEGAQNQGRKAEGAQNQGRKAEGAQNQGK-KAEGAPNQGKKAEGAPNQGKKAEGTPNQGK 536
Cdd:TIGR00927 704 AD------HKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEgEAEGKHEVETEGDRKETEHEGETEAEGKED 777
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 537 KAEGTPNQGkkaEGTPNQGKKAEGAQNQGKKAEGAQNQGKKAEGTPNQGKKAEGAQNQGKKAEGAQNQGKKAEGaqNQGK 616
Cdd:TIGR00927 778 EDEGEIQAG---EDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQD--EKGV 852
|
250 260 270
....*....|....*....|....*....|...
gi 14133249 617 KAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKVE 649
Cdd:TIGR00927 853 DGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEE 885
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
933-1223 |
2.47e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 52.61 E-value: 2.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 933 AVQARMQAsyrehVKEVQQLQGKIRTLQEQLENGPNT--QLARLQQENSILRDALNQATSQVESKQnAELAKL------- 1003
Cdd:PRK11281 40 DVQAQLDA-----LNKQKLLEAEDKLVQQDLEQTLALldKIDRQKEETEQLKQQLAQAPAKLRQAQ-AELEALkddndee 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1004 -RQELSKVSKELVEKSEAVRQDEQQRkaLEAKAAAFEKQVLQLQASHRESEEAL---QKRLDEVSRELCHTQSSHASLRA 1079
Cdd:PRK11281 114 tRETLSTLSLRQLESRLAQTLDQLQN--AQNDLAEYNSQLVSLQTQPERAQAALyanSQRLQQIRNLLKGGKVGGKALRP 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1080 DAEKaqeqqqqmaelhsKLQSseaevrskceELSGLHGQLQEARAE---NSQLTERIRSIEALLEAGQARDAQDVQASQA 1156
Cdd:PRK11281 192 SQRV-------------LLQA----------EQALLNAQNDLQRKSlegNTQLQDLLQKQRDYLTARIQRLEHQLQLLQE 248
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 14133249 1157 EADQQqtRLKELESQVsgleKEAIELREAveqQKVKNNDL----REKNWKAMEALATAeqacKEKLHSLTQ 1223
Cdd:PRK11281 249 AINSK--RLTLSEKTV----QEAQSQDEA---ARIQANPLvaqeLEINLQLSQRLLKA----TEKLNTLTQ 306
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1276-1570 |
2.57e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 52.61 E-value: 2.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1276 PPAPAEPSSDL--ASKLREAEETQSTLQAEcdqyrsiLAETEGMLRDLQKSVEEEEQVwRAKVGAAEEELQKSRvtvkhl 1353
Cdd:PRK11281 35 LPTEADVQAQLdaLNKQKLLEAEDKLVQQD-------LEQTLALLDKIDRQKEETEQL-KQQLAQAPAKLRQAQ------ 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1354 EEIvEKLKGELESSDQVREHTLHLeAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLD---AAKSEAQKQSDELalv 1430
Cdd:PRK11281 101 AEL-EALKDDNDEETRETLSTLSL-RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPEraqAALYANSQRLQQI--- 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1431 RQQLSemkshveDGDIAGAPASSPE--APPAEQDPVQLKTQLEWTEA----ILED-EQTQRQKLTAEFEEAQTSACRLQE 1503
Cdd:PRK11281 176 RNLLK-------GGKVGGKALRPSQrvLLQAEQALLNAQNDLQRKSLegntQLQDlLQKQRDYLTARIQRLEHQLQLLQE 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1504 EL-EKLR-----TAGPLESSETEEASQ----LKERLEKEKKLTSDLGRAATRLQEL----LKTTQeQLAREKDTVKKLQE 1569
Cdd:PRK11281 249 AInSKRLtlsekTVQEAQSQDEAARIQanplVAQELEINLQLSQRLLKATEKLNTLtqqnLRVKN-WLDRLTQSERNIKE 327
|
.
gi 14133249 1570 Q 1570
Cdd:PRK11281 328 Q 328
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
517-718 |
4.87e-06 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 51.44 E-value: 4.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 517 KAEGAPNQGKKAEGTPNQGKKAEGTPNQGKKAEGTPNQGKKAEGAQNQGKKAEGAQNQGKKAEGTPNQGKKAEGAQNQGK 596
Cdd:PRK12678 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 597 KAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKVEGAQNQGKKAEGAQNQGKKAEGAQNQGK 676
Cdd:PRK12678 136 AARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRR 215
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 14133249 677 KAEGAQNQGQKGEGAQNQGKKTEGAQGKKAERSPNQGKKGEG 718
Cdd:PRK12678 216 EERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEG 257
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
982-1194 |
6.01e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 51.17 E-value: 6.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 982 RDALNQATSQVEskqnAELAKLRQELSKVSKELVE--KSEAVRQDEQQRKALEAKAAAFEKQVLQLQASHREseeaLQKR 1059
Cdd:COG3206 170 REEARKALEFLE----EQLPELRKELEEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAE----AEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1060 LDEVSRELCHTQSSHASLRADAEKaqeqqqqmaelhSKLQSSEAEVRSKCEELSGL----HGQLQEARAENSQLTERIRS 1135
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQSPVI------------QQLRAQLAELEAELAELSARytpnHPDVIALRAQIAALRAQLQQ 309
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1136 -IEALLEAGQArdaqDVQASQAEADQQQTRLKELESQVSGLEKEAIELREAVEQQKVKNN 1194
Cdd:COG3206 310 eAQRILASLEA----ELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARE 365
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1288-1576 |
8.14e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 8.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1288 SKLREAEETQSTLQAECDQYRSILAETEGMLRDLQKSVEEEEqvwraKVGAAEEELQKSRVTVkhleeivekLKGELESS 1367
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAE-----RYQALLKEKREYEGYE---------LLKEKEAL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1368 DQVREHTLHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAAKSEAQKQ--------SDELALVRQQLSEMKS 1439
Cdd:TIGR02169 236 ERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRvkekigelEAEIASLERSIAEKER 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1440 HVEDGDiagapassPEAPPAEQDPVQLKTQLEWTEAILEDEQTQRQKLTAEFEEAQTSACRLQEELEKLRTagplESSET 1519
Cdd:TIGR02169 316 ELEDAE--------ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDK----EFAET 383
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 14133249 1520 -EEASQLKERLEKEKKLTSDLGRAATRLQELLKTTQEQLAREKDTVKKLQEQLEKAED 1576
Cdd:TIGR02169 384 rDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEE 441
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
877-1057 |
9.51e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.40 E-value: 9.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 877 QLEEKEKLLATEQEDAAVAKSKLRELNKEMAAEKAKAAAGEAKVKKQ-LVAREQEITAVQARMQASYREHVKEVQQLQGK 955
Cdd:COG3206 220 QLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQqLRAQLAELEAELAELSARYTPNHPDVIALRAQ 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 956 IRTLQEQLENGPNTQLARLQQENSILRdalnqatsQVESKQNAELAKLRQELSKVSkelvekseavrQDEQQRKALEAKA 1035
Cdd:COG3206 300 IAALRAQLQQEAQRILASLEAELEALQ--------AREASLQAQLAQLEARLAELP-----------ELEAELRRLEREV 360
|
170 180
....*....|....*....|..
gi 14133249 1036 AAFEKQVLQLQASHRESEEALQ 1057
Cdd:COG3206 361 EVARELYESLLQRLEEARLAEA 382
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
923-1189 |
1.13e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 1.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 923 QLVAREQEITAVQARMQasyrEHVKEVQQLQGKIRTLQEQLEngpntQLARLQQENSILRDALnQATSQVESKQ------ 996
Cdd:COG4913 611 KLAALEAELAELEEELA----EAEERLEALEAELDALQERRE-----ALQRLAEYSWDEIDVA-SAEREIAELEaelerl 680
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 997 ---NAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVlqlqashreseEALQKRLDEVSRELCHTQSS 1073
Cdd:COG4913 681 dasSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEEL-----------DELQDRLEAAEDLARLELRA 749
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1074 HASLRADAEKAQEqqqqmaelhsklqsSEAEVRSKceelsgLHGQLQEARAENSQLTERIRSIealLEAGQAR---DAQD 1150
Cdd:COG4913 750 LLEERFAAALGDA--------------VERELREN------LEERIDALRARLNRAEEELERA---MRAFNREwpaETAD 806
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 14133249 1151 VQASQAEADQQQTRLKELESqvSGL-EKEAiELREAVEQQ 1189
Cdd:COG4913 807 LDADLESLPEYLALLDRLEE--DGLpEYEE-RFKELLNEN 843
|
|
| Rib_recp_KP_reg |
pfam05104 |
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ... |
1404-1536 |
1.33e-05 |
|
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.
Pssm-ID: 461548 [Multi-domain] Cd Length: 140 Bit Score: 46.65 E-value: 1.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1404 QLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKSHVEDGDIAGapasSPEAPPAEQDPVQLKTQLEWTEAILEDEQT- 1482
Cdd:pfam05104 8 EALAKQRRELKKTPTEKEKKKKEKKKEKKKKSKKKEEKPNGKLPE----SEQADESEEEPREFKTPDEAPSAALEPEPVp 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 14133249 1483 QRQKLTAEFEEAQTS---ACRLQEELEKLRTAGPLESSETEEASQLKERLEKEKKLT 1536
Cdd:pfam05104 84 TPVPAPVEPEPAPPSespAPSPKEKKKKEKKSAKVEPAETPEAVQPKPALEKEEPPA 140
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
998-1238 |
1.37e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 49.95 E-value: 1.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 998 AELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKqvLQLQASHREsEEALQKRLDEVSRELCHTQSSHASL 1077
Cdd:COG3096 836 AELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNK--LLPQANLLA-DETLADRLEELREELDAAQEAQAFI 912
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1078 RADAEKAQEQQQQMAELHSKLQSSEA-------------EVRSKCEELSGL-----HGQLQEA---RAENSQLTERIRsi 1136
Cdd:COG3096 913 QQHGKALAQLEPLVAVLQSDPEQFEQlqadylqakeqqrRLKQQIFALSEVvqrrpHFSYEDAvglLGENSDLNEKLR-- 990
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1137 EALLEAGQARDAQDVQASQAEADQQQTrLKELESQVSGLEKEAIELREAVEQQKvknnDLREKNWKAMEALATAE-QACK 1215
Cdd:COG3096 991 ARLEQAEEARREAREQLRQAQAQYSQY-NQVLASLKSSRDAKQQTLQELEQELE----ELGVQADAEAEERARIRrDELH 1065
|
250 260
....*....|....*....|...
gi 14133249 1216 EKLHSLTQAKEESEKQLCLIEAQ 1238
Cdd:COG3096 1066 EELSQNRSRRSQLEKQLTRCEAE 1088
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1013-1360 |
2.38e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 2.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1013 ELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQA---SHRESEEALQKRLDEVSRELCHTQS----SHASLRADAEKAQ 1085
Cdd:TIGR02169 647 ELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRErleGLKRELSSLQSELRRIENRLDELSQelsdASRKIGEIEKEIE 726
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1086 EQQQQMAELHSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQD-VQASQAEADQQQTR 1164
Cdd:TIGR02169 727 QLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSrIPEIQAELSKLEEE 806
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1165 LKELESQVSGLEKE--AIELREAVEQQKVKNNDLREKNWKAMEAlataeqACKEKLHSLTQAKEESEKQLCLIEAqtmea 1242
Cdd:TIGR02169 807 VSRIEARLREIEQKlnRLTLEKEYLEKEIQELQEQRIDLKEQIK------SIEKEIENLNGKKEELEEELEELEA----- 875
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1243 llallpelsvlAQQNYTEWLQDLKEKgptllkhppapaepSSDLASKLREAEETQSTLQAECDQYRSILAETEGMLRDLQ 1322
Cdd:TIGR02169 876 -----------ALRDLESRLGDLKKE--------------RDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALE 930
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 14133249 1323 KSVEEEEQVWRAKVGAAEEE--LQKSRVTVKHLEEIVEKL 1360
Cdd:TIGR02169 931 EELSEIEDPKGEDEEIPEEElsLEDVQAELQRVEEEIRAL 970
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
923-1138 |
2.51e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.86 E-value: 2.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 923 QLVAREQEITAVQARMQAsYREHVKEVQqLQGKIRTLQEQLENGpNTQLARLQQENSILRDALNQATSQVESK------- 995
Cdd:COG3206 183 QLPELRKELEEAEAALEE-FRQKNGLVD-LSEEAKLLLQQLSEL-ESQLAEARAELAEAEARLAALRAQLGSGpdalpel 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 996 -QNAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVlqlqashresEEALQKRLDEVSRELCHTQSSH 1074
Cdd:COG3206 260 lQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQL----------QQEAQRILASLEAELEALQARE 329
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 14133249 1075 ASLRADAEKAQEQQQQMAELHSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEA 1138
Cdd:COG3206 330 ASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEALTVGNVRVIDP 393
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1000-1403 |
2.79e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 2.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1000 LAKLRQELSKVSKElveKSEAVRQDEQQRKALEAKAAAFEKQVLqlqaSHRESEEALQKRLDEVSRELchtqsshaslra 1079
Cdd:TIGR02169 193 IDEKRQQLERLRRE---REKAERYQALLKEKREYEGYELLKEKE----ALERQKEAIERQLASLEEEL------------ 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1080 dAEKAQEQQQQMAELHSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQDVQASQAEAD 1159
Cdd:TIGR02169 254 -EKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEID 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1160 QQQTRLKELESQVSGLEKEAIELREAVEQQKVKNNDLREKnwkaMEALATAEQACKEKLHSLTQAKEESEKQLCLIEAQT 1239
Cdd:TIGR02169 333 KLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAE----LEEVDKEFAETRDELKDYREKLEKLKREINELKREL 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1240 MEALLALLPELSVLAqqnytewlqDLKEKGPTLLKHPPAPAEPSSDLASKLREAEETQSTLQAECDQYRSILAETEGMLR 1319
Cdd:TIGR02169 409 DRLQEELQRLSEELA---------DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1320 DLQK---SVEEEEQVWRAKVGAAEEELQKSRVTVKHLEEIVEKLKGELESSDQVRE-HTLHLEAELEKHMAAA------- 1388
Cdd:TIGR02169 480 RVEKelsKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGErYATAIEVAAGNRLNNVvveddav 559
|
410
....*....|....*
gi 14133249 1389 SAECQNYAKEVAGLR 1403
Cdd:TIGR02169 560 AKEAIELLKRRKAGR 574
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
869-1573 |
3.14e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 3.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 869 DPVAILKRQLEEKEKLLATEQEDAAVAKSKLRELnkemAAEKAKAAAGEAKVKKQLVAREQEITAVQARMQ---ASYREH 945
Cdd:TIGR02169 308 RSIAEKERELEDAEERLAKLEAEIDKLLAEIEEL----EREIEEERKRRDKLTEEYAELKEELEDLRAELEevdKEFAET 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 946 VKEVQQLQGKIRTLQEQLENgpntqlarLQQENSILRDALNQATSQVEsKQNAELAKLRQELSKVSKELVEKSEAVRQDE 1025
Cdd:TIGR02169 384 RDELKDYREKLEKLKREINE--------LKRELDRLQEELQRLSEELA-DLNAAIAGIEAKINELEEEKEDKALEIKKQE 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1026 QQRKALEAKAAAFEKQVLQLQASHRESEE---ALQKRLDEVSRELCHTQSSHASLRADAEKAQEQQQQMAELHSKLQSSE 1102
Cdd:TIGR02169 455 WKLEQLAADLSKYEQELYDLKEEYDRVEKelsKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVG 534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1103 AEVRSKCEELSGlhGQLQEARAENSQLTE--------------------RIRSIEALLEAGQARDAQDVQASQAEADQQ- 1161
Cdd:TIGR02169 535 ERYATAIEVAAG--NRLNNVVVEDDAVAKeaiellkrrkagratflplnKMRDERRDLSILSEDGVIGFAVDLVEFDPKy 612
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1162 -------------------------QTRLKELESQV--------------SGLEKEAIELREAVEQQKVKNNDLREKNWK 1202
Cdd:TIGR02169 613 epafkyvfgdtlvvedieaarrlmgKYRMVTLEGELfeksgamtggsrapRGGILFSRSEPAELQRLRERLEGLKRELSS 692
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1203 AMEALATAEQAckekLHSLTQAKEESEKQLCLIEAQtmeallallpelsvlaqqnytewLQDLKEKGPTLLKHPPAPAEP 1282
Cdd:TIGR02169 693 LQSELRRIENR----LDELSQELSDASRKIGEIEKE-----------------------IEQLEQEEEKLKERLEELEED 745
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1283 SSDLASKLREAEETQSTLQAECDQYRSILAETEGMLRDLQKSVEEEE-QVWRAKVGAAEEELQKSRVTVKHLEEIVEKLK 1361
Cdd:TIGR02169 746 LSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRiPEIQAELSKLEEEVSRIEARLREIEQKLNRLT 825
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1362 GELESSDQVREHTLHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQS---QLDAAKSEAQKQSDELalvRQQLSEMK 1438
Cdd:TIGR02169 826 LEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAalrDLESRLGDLKKERDEL---EAQLRELE 902
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1439 SHVEdgdiagapasspeappaeqdpvQLKTQLEWTEAILEDEQTQRQKLTAEFeeaqtsacrlqEELEKLRTAGPLESSE 1518
Cdd:TIGR02169 903 RKIE----------------------ELEAQIEKKRKRLSELKAKLEALEEEL-----------SEIEDPKGEDEEIPEE 949
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 14133249 1519 TEEASQLKERLEKEKKLTSDLG-----------RAATRLQElLKTTQEQLAREKDTVKKLQEQLEK 1573
Cdd:TIGR02169 950 ELSLEDVQAELQRVEEEIRALEpvnmlaiqeyeEVLKRLDE-LKEKRAKLEEERKAILERIEEYEK 1014
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1363-1575 |
3.64e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.78 E-value: 3.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1363 ELESSDQVREHTLHLeaeleKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKSHVE 1442
Cdd:COG1196 217 ELKEELKELEAELLL-----LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1443 DgdiagapasspeappAEQDPVQLKTQLEWTEAILEDEQTQRQKLTAEFEEAQTSACRLQEELEKLRTAgpLESSETEEA 1522
Cdd:COG1196 292 E---------------LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEE--LEEAEEELE 354
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 14133249 1523 SQLKERLEKEKKLTSDLGRAATRLQELLKTTQEQLAREKDTVKKLQEQLEKAE 1575
Cdd:COG1196 355 EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE 407
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
947-1192 |
3.88e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 3.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 947 KEVQQLQGKIRTLQEQLEngpntqlarlqqensilrdalnqatsqvesKQNAELAKLRQELSKVSKELVEKSEAVRQDEQ 1026
Cdd:COG4942 27 AELEQLQQEIAELEKELA------------------------------ALKKEEKALLKQLAALERRIAALARRIRALEQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1027 QRKALEAKAAAFEKQVLQLQASHRESEEALQKRLDEVSRELCHTQSSHASLRADAEKAQEQQQQMAELHSKLQSSEAEVR 1106
Cdd:COG4942 77 ELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1107 SKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQDVQASQAEADQQQTRLKELESQVSGLEKEAIELREAV 1186
Cdd:COG4942 157 ADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
....*.
gi 14133249 1187 EQQKVK 1192
Cdd:COG4942 237 AAAAER 242
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
197-439 |
4.56e-05 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 48.45 E-value: 4.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 197 ETAPKEVPMVVVPPVGAKGNTPATGTTQGK-KAEGTQNQSKKAEGAPNQGRKAEGTPNQGKKTEGTPNQGkkaEGTPNQG 275
Cdd:TIGR00927 649 GERPTEAEGENGEESGGEAEQEGETETKGEnESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHE---GETEAEG 725
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 276 KKAEGTPNQGKKAEGAQNQGKkvdtTPNQGKKVEGAPTQGRKAEGAQNQAKKVEGAQNQGK--KAEGAQNQGKKGEGAQN 353
Cdd:TIGR00927 726 TEDEGEIETGEEGEEVEDEGE----GEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEiqAGEDGEMKGDEGAEGKV 801
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 354 QGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGaqNQGKKAEGAQNQGKKVEGAQNQGKKAEGAQN 433
Cdd:TIGR00927 802 EHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQD--EKGVDGGGGSDGGDSEEEEEEEEEEEEEEEE 879
|
....*.
gi 14133249 434 QGKKAE 439
Cdd:TIGR00927 880 EEEEEE 885
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1175-1577 |
6.62e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 6.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1175 LEKEAIELREAVEQQKVKNNDLREKNWKAMEALATAEQACKEK---LHSLTQAKEESEKQLCLIEAQTMEALLALLPELS 1251
Cdd:COG4717 51 LEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELqeeLEELEEELEELEAELEELREELEKLEKLLQLLPL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1252 VLAQQNYTEWLQDLKEKGPTLLKHppapAEPSSDLASKLREAEETQSTLQAECDQY-RSILAETEGMLRDLQKSVEEeeq 1330
Cdd:COG4717 131 YQELEALEAELAELPERLEELEER----LEELRELEEELEELEAELAELQEELEELlEQLSLATEEELQDLAEELEE--- 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1331 vWRAKVGAAEEELQKSRVTVKHLEEIVEKLKGELESSDQVREH-----------TLHLEAELEKHMAAASAECQNYAKEV 1399
Cdd:COG4717 204 -LQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLkearlllliaaALLALLGLGGSLLSLILTIAGVLFLV 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1400 AGL----RQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKSHVEdGDIAGAPASSPEAPPAEQDPVQLKTQLEWT-- 1473
Cdd:COG4717 283 LGLlallFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALG-LPPDLSPEELLELLDRIEELQELLREAEELee 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1474 EAILEDEQTQRQKLTAEF----EEAQTSACRLQEELEKLRTAgpLESSETEEASQLKERLEKEKKLT-SDLGRAATRLQE 1548
Cdd:COG4717 362 ELQLEELEQEIAALLAEAgvedEEELRAALEQAEEYQELKEE--LEELEEQLEELLGELEELLEALDeEELEEELEELEE 439
|
410 420
....*....|....*....|....*....
gi 14133249 1549 LLKTTQEQLAREKDTVKKLQEQLEKAEDG 1577
Cdd:COG4717 440 ELEELEEELEELREELAELEAELEQLEED 468
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
871-1437 |
8.09e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.66 E-value: 8.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 871 VAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMAAEKAKAAAGEAKVKKQLVAREQEITAVQARMQASYREHVKEVQ 950
Cdd:TIGR00618 296 AAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQH 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 951 QLQGKIRTLQEQLE-----------------NGPNTQLARLQQENSILRDALNQATSQVESKQNAELakLRQELSKVSKE 1013
Cdd:TIGR00618 376 TLTQHIHTLQQQKTtltqklqslckeldilqREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAEL--CAAAITCTAQC 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1014 LVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQASHRESEEALQkRLDEVSRELCHTQSSHASLRADAEKAQEQQQQMAE 1093
Cdd:TIGR00618 454 EKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLL-ELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQR 532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1094 L---HSKLQSSEAEVRSKC----EELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQDVQASQAEADQQQTRLK 1166
Cdd:TIGR00618 533 GeqtYAQLETSEEDVYHQLtserKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLAC 612
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1167 ELESQVSGLEKEAIELREAVEQQKVKNNDLREKNWKAMEALATAEQACKEKLHSLTQAKEESEKQLCLIEAQTMEALLAL 1246
Cdd:TIGR00618 613 EQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQL 692
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1247 LPELSVLAQQNytEWLQDLKEKGPTLLKHPPAPAEPSSDLASKLREAEETQSTLQAECDQyrsiLAETEGMLRDLQKSVE 1326
Cdd:TIGR00618 693 TYWKEMLAQCQ--TLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMH----QARTVLKARTEAHFNN 766
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1327 EEEQVWRAKVGAAEEEL-QKSRVTVKHLEEIVEKLKGELEssdQVREHTLHLEAELEKHMAAASAECQNYAKEVAGLRQL 1405
Cdd:TIGR00618 767 NEEVTAALQTGAELSHLaAEIQFFNRLREEDTHLLKTLEA---EIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSAT 843
|
570 580 590
....*....|....*....|....*....|..
gi 14133249 1406 LLESQSQLDaAKSEAQKQSDELALVRQQLSEM 1437
Cdd:TIGR00618 844 LGEITHQLL-KYEECSKQLAQLTQEQAKIIQL 874
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
871-1586 |
8.68e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.27 E-value: 8.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 871 VAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMAAEKAKAAAGEAKVKKQLVAREQEITAVQARMQASYREHVKEvq 950
Cdd:pfam02463 164 GSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDL-- 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 951 qLQGKIRTLQEQLENgpNTQLARLQQENSILRDALNQATSQVESKQNAELAKLRQELSKVSKELVEKSEAVRQDEQQRKA 1030
Cdd:pfam02463 242 -LQELLRDEQEEIES--SKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1031 LEAKAAAFEKQVLQLQashrESEEALQKRLDEVSRelchtqsshaslradaekAQEQQQQMAELHSKLQSSEAEVRSKCE 1110
Cdd:pfam02463 319 SEKEKKKAEKELKKEK----EEIEELEKELKELEI------------------KREAEEEEEEELEKLQEKLEQLEEELL 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1111 ELSGLHGQLQEARAENSQLTERIRSIEalleagQARDAQDVQASQAEADQQQTRLKELESQVSGLEKEAIELREAVEQQK 1190
Cdd:pfam02463 377 AKKKLESERLSSAAKLKEEELELKSEE------EKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEK 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1191 VKNNDLREKNWKAMEALATAEQACKEKLHSLTQAKEESEKQLCLIEAQTMEALLALLPELSVLAQQNYTEWLQDLKEKGP 1270
Cdd:pfam02463 451 EELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGR 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1271 TLLKHPPAPAEpssdLASKLREAEETQSTLQAECDQYRSILAETEGMLRDLQKSVEEEEQVWRAKVGAAEEELQKSRVTV 1350
Cdd:pfam02463 531 LGDLGVAVENY----KVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLA 606
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1351 KHLE---EIVEKLKGELESSDQVREHTLHLEAELEKHMAAASAECQNYAK---EVAGLRQLLLESQSQLDAAKSEAQKQS 1424
Cdd:pfam02463 607 QLDKatlEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEglaEKSEVKASLSELTKELLEIQELQEKAE 686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1425 DELALVRQQLSEMKSHVEDGDIagapasspeappaEQDPVQLKTQLEWTEAILEDEQTQRQKLTAEFEEAQTSACrLQEE 1504
Cdd:pfam02463 687 SELAKEEILRRQLEIKKKEQRE-------------KEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEE-EEEE 752
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1505 LEKLRTAGPLESSETEEASQLKERLEKEKKLTSDLgrAATRLQELLKTTQEQLAREKDTVKKLQEQLEKAEDGSSSKEGT 1584
Cdd:pfam02463 753 EKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLK--VEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKI 830
|
..
gi 14133249 1585 SV 1586
Cdd:pfam02463 831 KE 832
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
998-1428 |
9.54e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.07 E-value: 9.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 998 AELAKLRQELSKVS-KELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLqashreseEALQKRLDEVSRELCHTQSSHAS 1076
Cdd:COG4717 49 ERLEKEADELFKPQgRKPELNLKELKELEEELKEAEEKEEEYAELQEEL--------EELEEELEELEAELEELREELEK 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1077 LRADAekaqeqqqqmaelhsKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQDVQASQA 1156
Cdd:COG4717 121 LEKLL---------------QLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQ 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1157 EADQQQTRLKELESQVSGLEKEAIELREAVEQQKVKNNDLR---EKNWKAMEALATAEQACKEKL--------------- 1218
Cdd:COG4717 186 LSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEeelEQLENELEAAALEERLKEARLllliaaallallglg 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1219 HSLTQAKEESEKQLCLI----------------EAQTMEALLALLPELSVLAQQNYTEWLQDLKEKGPTLLKHPPAPAEP 1282
Cdd:COG4717 266 GSLLSLILTIAGVLFLVlgllallflllarekaSLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDR 345
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1283 SSDLASKLREAEETQSTLQAEC--DQYRSIL----AETEGMLRDLQKSVEEEEQvWRAKVGAAEEELQksrvtvkhleei 1356
Cdd:COG4717 346 IEELQELLREAEELEEELQLEEleQEIAALLaeagVEDEEELRAALEQAEEYQE-LKEELEELEEQLE------------ 412
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 14133249 1357 vEKLKGELESSDQVREHTLHLE-AELEKHMAAASAECQNYAKEVAGLRQLL--LESQSQLDAAKSEAQKQSDELA 1428
Cdd:COG4717 413 -ELLGELEELLEALDEEELEEElEELEEELEELEEELEELREELAELEAELeqLEEDGELAELLQELEELKAELR 486
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
943-1363 |
9.79e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.07 E-value: 9.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 943 REHVKEVQQLQGKIRTLQEQLENGpNTQLARLQQENSILRDALNQATSQvesKQNAELAKLRQELSKVSKELVEKSEAVR 1022
Cdd:COG4717 77 EEELKEAEEKEEEYAELQEELEEL-EEELEELEAELEELREELEKLEKL---LQLLPLYQELEALEAELAELPERLEELE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1023 QDEQQRKALEAKAAAFEKQVLQLQashRESEEALQKRLDEVSRELCHTQSSHASLRADAEkaqeqqqqmaELHSKLQSSE 1102
Cdd:COG4717 153 ERLEELRELEEELEELEAELAELQ---EELEELLEQLSLATEEELQDLAEELEELQQRLA----------ELEEELEEAQ 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1103 AEVRSKCEELSGLHGQLQEARAENSQLTERI-------------------RSIEALLEAGQARDAQDVQASQAEADQQQT 1163
Cdd:COG4717 220 EELEELEEELEQLENELEAAALEERLKEARLllliaaallallglggsllSLILTIAGVLFLVLGLLALLFLLLAREKAS 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1164 RLKELESQVSGLEKEAIELREAVEQQKVKNNDLREKNWKAMEALATAEQAcKEKLHSLTQAKEESEKQLCLIEAQTMEAL 1243
Cdd:COG4717 300 LGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEEL-QELLREAEELEEELQLEELEQEIAALLAE 378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1244 LALLPELS----VLAQQNYTEWLQDLKEKGPTLLKHPP-----APAEPSSDLASKLREAEETQSTLQAECDQYRSILAET 1314
Cdd:COG4717 379 AGVEDEEElraaLEQAEEYQELKEELEELEEQLEELLGeleelLEALDEEELEEELEELEEELEELEEELEELREELAEL 458
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 14133249 1315 EGMLRDLQKS-----VEEEEQVWRAKVGAAEEELQKSRVTVKHLEEIVEKLKGE 1363
Cdd:COG4717 459 EAELEQLEEDgelaeLLQELEELKAELRELAEEWAALKLALELLEEAREEYREE 512
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
876-1067 |
1.04e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 876 RQLEEKEKLLATEQEDAAVAKSKLRELNKEMAAEKAKAAAGEAKVKKQLVAREQEITAVQARMQASYREHVKEVQQLQGK 955
Cdd:COG4913 245 EDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 956 IRTLQEQLENGPNTQLARLQQENSILRDALNQATSQVESKQN-------------AELAKLRQELSKVSKELVEKSEAVR 1022
Cdd:COG4913 325 LDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEAllaalglplpasaEEFAALRAEAAALLEALEEELEALE 404
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 14133249 1023 QD----EQQRKALEAKAAAFEKQVLQLQASHRESEEALQKRLDEVSREL 1067
Cdd:COG4913 405 EAlaeaEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEAL 453
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
861-1225 |
1.06e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.07 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 861 WHKATQKGDPVAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMAAEKAKAAAGEAKVKKQLVAREQEITAVQARMQA 940
Cdd:COG4717 134 LEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEE 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 941 SYREHVKEVQQLQGKIRTLQEQLENGPNTQlaRLQQENSILRDA-------LNQATSQVESKQNAELAKLRQELSKVSKE 1013
Cdd:COG4717 214 ELEEAQEELEELEEELEQLENELEAAALEE--RLKEARLLLLIAaallallGLGGSLLSLILTIAGVLFLVLGLLALLFL 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1014 LVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQASHRESEEALQKR----LDEVSRELCHTQSSHASLRADAEKAQEQQQ 1089
Cdd:COG4717 292 LLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEelleLLDRIEELQELLREAEELEEELQLEELEQE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1090 QMAELHSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQD--------VQASQAEADQQ 1161
Cdd:COG4717 372 IAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEeleeleeeLEELEEELEEL 451
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 14133249 1162 QTRLKELESQVSGLEKEAiELREAVEQQKVKNNDLRE--KNWKAMEALATAEQACKEKLHSLTQAK 1225
Cdd:COG4717 452 REELAELEAELEQLEEDG-ELAELLQELEELKAELRElaEEWAALKLALELLEEAREEYREERLPP 516
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
996-1213 |
1.07e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 996 QNAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQASHRESEE---ALQKRLDEVSRELCHTQS 1072
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQelaALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1073 SHASLRADAEKAQEQQQQMAELHSKL----QSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDA 1148
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPLAlllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 14133249 1149 QDVQASQAEADQQQTRLKELESQVSGLEKEAIELREAVEQQKVKNNDLREKNWKAMEALATAEQA 1213
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
867-1231 |
1.07e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.07 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 867 KGDPVAILKRQLEEKEKLLATEQEDAAVAKSKLRELnkemaaekakaaageAKVKKQLVAREQEITAVQARMQA-----S 941
Cdd:COG4717 62 QGRKPELNLKELKELEEELKEAEEKEEEYAELQEEL---------------EELEEELEELEAELEELREELEKlekllQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 942 YREHVKEVQQLQGKIRTLQEQLENGPN--TQLARLQQENSILRDALNQATSQVESKQNAELAKLRQELSKVSKELVEKSE 1019
Cdd:COG4717 127 LLPLYQELEALEAELAELPERLEELEErlEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQ 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1020 AVRQDEQQRKALEAKAAAFEKQVLQLQASHResEEALQKRLDEVSRELC------------------------------- 1068
Cdd:COG4717 207 RLAELEEELEEAQEELEELEEELEQLENELE--AAALEERLKEARLLLLiaaallallglggsllsliltiagvlflvlg 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1069 -------HTQSSHASLRADAEKAQEQQQQM-----------AELHSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLT 1130
Cdd:COG4717 285 llallflLLAREKASLGKEAEELQALPALEeleeeeleellAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQ 364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1131 --ERIRSIEALLEAGQARDAQDVQASQAEADQQQ---TRLKELESQVSGLEKEAIELREAVEQQKVKnnDLREKNWKAME 1205
Cdd:COG4717 365 leELEQEIAALLAEAGVEDEEELRAALEQAEEYQelkEELEELEEQLEELLGELEELLEALDEEELE--EELEELEEELE 442
|
410 420
....*....|....*....|....*.
gi 14133249 1206 ALATAEQACKEKLHSLTQAKEESEKQ 1231
Cdd:COG4717 443 ELEEELEELREELAELEAELEQLEED 468
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1339-1576 |
1.52e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.47 E-value: 1.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1339 AEEELQKSRVTVKHLEEivekLKGELESSDQVREHTLHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAAKS 1418
Cdd:COG1196 220 EELKELEAELLLLKLRE----LEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1419 EAQKQSDELALVRQQLSEmkshvedgdiagapasspeappAEQDPVQLKTQLEWTEAILEDEQTQRQKLTAEFEEAQtsa 1498
Cdd:COG1196 296 ELARLEQDIARLEERRRE----------------------LEERLEELEEELAELEEELEELEEELEELEEELEEAE--- 350
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 14133249 1499 crlqEELEKLRTA-GPLESSETEEASQLKERLEKEKKLTSDLGRAATRLQELLKTTQEQLAREKDTVKKLQEQLEKAED 1576
Cdd:COG1196 351 ----EELEEAEAElAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEE 425
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
960-1575 |
1.99e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.26 E-value: 1.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 960 QEQLENGPNTQLARLQQENSILRDALNQATSQVESKQNAELAKlRQELSKVSKELVEKSEAVRQDEQQRKALEAkaaafe 1039
Cdd:pfam15921 140 QEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSH-EGVLQEIRSILVDFEEASGKKIYEHDSMST------ 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1040 kqvlqlqASHRESEEALQKRLDEVSRELCHTQSshaslradaekaqeqqqQMAELHSKLQSSEAEVRSKCEELsglhgqL 1119
Cdd:pfam15921 213 -------MHFRSLGSAISKILRELDTEISYLKG-----------------RIFPVEDQLEALKSESQNKIELL------L 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1120 QEARAENSQL-TERIRSIEALLE-AGQARDAQDVQASQAEADQQQTR---------LKELESQVSGLEKeaiELREAVEQ 1188
Cdd:pfam15921 263 QQHQDRIEQLiSEHEVEITGLTEkASSARSQANSIQSQLEIIQEQARnqnsmymrqLSDLESTVSQLRS---ELREAKRM 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1189 QKVKNNDLREKNWKAMEALATAeqacKEKLHSLTQAKEESEKQLclieAQTMEALLALLPELSVLAQQNYTEWLQDLKEK 1268
Cdd:pfam15921 340 YEDKIEELEKQLVLANSELTEA----RTERDQFSQESGNLDDQL----QKLLADLHKREKELSLEKEQNKRLWDRDTGNS 411
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1269 gpTLLKHPPAPAEpssDLASKLREAEETQSTLQAECD-QYRSILAETEGMLRDLQK--SVEEEEQVWRAKVGAAEEELQK 1345
Cdd:pfam15921 412 --ITIDHLRRELD---DRNMEVQRLEALLKAMKSECQgQMERQMAAIQGKNESLEKvsSLTAQLESTKEMLRKVVEELTA 486
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1346 SRVTVKHLEEIVEKLKGELESSDQVREHTLHLEAELEKHMAAASAECQNYAKEVAGLRQLllesQSQLDAAKSEAQKQSD 1425
Cdd:pfam15921 487 KKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNV----QTECEALKLQMAEKDK 562
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1426 ELALVRQQLSEMKSHV-EDGDIAGApasspeappAEQDPVQLKTQLEWTEAILEDEQTQRQKLTAEFEEAQTSACRLQEE 1504
Cdd:pfam15921 563 VIEILRQQIENMTQLVgQHGRTAGA---------MQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELE 633
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 14133249 1505 LEKLRTAGPLESSETEEASQLKERLEKEKKLTSDLGRAATRLQELLKTTQEQLAREKD-TVKKLQEQLEKAE 1575
Cdd:pfam15921 634 KVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMEtTTNKLKMQLKSAQ 705
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
869-1573 |
2.22e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.12 E-value: 2.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 869 DPVAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMAAEKAKAAAGEAKVKKQLVAREQEITAvqarmQASYREHVKE 948
Cdd:pfam02463 314 EKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAK-----KKLESERLSS 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 949 VQQLQGKIRTLQEQLENGPNTQLARLQQENSILRDALNQATSQVESKQ------NAELAKLRQELSKVSKELVEKSEAVR 1022
Cdd:pfam02463 389 AAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEesielkQGKLTEEKEELEKQELKLLKDELELK 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1023 QDEQQRKALEaKAAAFEKQVLQLQASHRESEEALQKRLDEVSRELCHTQSSHASLRADAEKAQEQQQQMAELHSKLQSS- 1101
Cdd:pfam02463 469 KSEDLLKETQ-LVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISt 547
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1102 ---EAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQDVQASQAEADQQQTRLKELESQV-SGLEK 1177
Cdd:pfam02463 548 aviVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRaKVVEG 627
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1178 EAIELREAVEQQKVKNNDLREKNWKAMEALATAEQACKEKLHSLTQAKEESEKQLCLIEAQTMEALLALLPELSVLAQQN 1257
Cdd:pfam02463 628 ILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQR 707
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1258 YTEWLQDLKEKGPTLLKHPPAPAEPSSDLASKLREAEETQSTLQAECDQYRSILAETEGMLRDLQKSVEEEEQVWRAKVG 1337
Cdd:pfam02463 708 EKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLK 787
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1338 AAEEELQKSRVTVKHLEEIVEKLKGELESSDQVREHTLHLEAELE-----KHMAAASAECQNYAKEVAGLRQLLLESQSQ 1412
Cdd:pfam02463 788 VEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEeeleeLALELKEEQKLEKLAEEELERLEEEITKEE 867
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1413 LDAAKSEAQKQSDELALVRQQLSEMKSHVEDGDIAGAPASSPEAPPAEQDPVQLKTQLEWTEAILEDEQTQRQKLTAEFE 1492
Cdd:pfam02463 868 LLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADE 947
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1493 EAQTSACRLQEELEKLRTAGPLESSETEEASQLKERLEKEKKltsdlgraatrlQELLKTTQEQLAREKDTVKKLQEQLE 1572
Cdd:pfam02463 948 KEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEER------------YNKDELEKERLEEEKKKLIRAIIEET 1015
|
.
gi 14133249 1573 K 1573
Cdd:pfam02463 1016 C 1016
|
|
| dermokine |
cd21118 |
dermokine; Dermokine, also known as epidermis-specific secreted protein SK30/SK89, is a ... |
435-751 |
2.50e-04 |
|
dermokine; Dermokine, also known as epidermis-specific secreted protein SK30/SK89, is a skin-specific glycoprotein that may play a regulatory role in the crosstalk between barrier dysfunction and inflammation, and therefore play a role in inflammatory diseases such as psoriasis. Dermokine is one of the most highly expressed proteins in differentiating keratinocytes, found mainly in the spinous and granular layers of the epidermis, but also in the epithelia of the small intestine, macrophages of the lung, and endothelial cells of the lung. Mouse dermokine has been reported to be encoded by 22 exons, and its expression leads to alpha, beta, and gamma transcripts.
Pssm-ID: 411053 [Multi-domain] Cd Length: 495 Bit Score: 45.38 E-value: 2.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 435 GKKAEGAQNQGKKAEGAQNQGKkAEGAQNQGKKAEGAQNQDKKAEGAQNQGRKAegaqnqGRKAEGAQNQGKKAEGAPNQ 514
Cdd:cd21118 50 GQGAKEAASSGIQNALGQGHGE-EGGSTLGSRGDVFEHRLGEAARSLGNAGNEI------GRQAEDIIRHGVDAVHNSWQ 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 515 GKKAEGAPNQGKKAEGTPNQGKKAEGTPNQGKKAEGTPNQGkkaeGAQNQGKKAeGAQNQGKKAEGTPNQ-GKKAEGAQN 593
Cdd:cd21118 123 GSGGHGAYGSQGGPGVQGHGIPGGTGGPWASGGNYGTNSLG----GSVGQGGNG-GPLNYGTNSQGAVAQpGYGTVRGNN 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 594 QGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKVEGAQNQGKKAEGAQNQGKKAEGAQN 673
Cdd:cd21118 198 QNSGCTNPPPSGSHESFSNSGGSSSSGSSGSQGSHGSNGQGSSGSSGGQGNGGNNGSSSSNSGNSGGSNGGSSGNSGSGS 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 674 QGKKAEGAQNQGqkGEGAQNQGKKTEGAQGKKAERSPNQGKKGEGAPIQGKKADSVAN--QGTKVEGITNQGKKAEGSPS 751
Cdd:cd21118 278 GGSSSGGSNGWG--GSSSSGGSGGSGGGNKPECNNPGNDVRMAGGGGSQGSKESSGSHgsNGGNGQAEAVGGLNTLNSDA 355
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
313-549 |
2.64e-04 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 45.76 E-value: 2.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 313 TQGRKAEgAQNQAKKVEGAQNQGKKAEGAQNQGKKGE----GAQNQgkKAEGAQNQGKKAEGAQNQGKKAEgAQNQGKKA 388
Cdd:TIGR00927 631 SKGDVAE-AEHTGERTGEEGERPTEAEGENGEESGGEaeqeGETET--KGENESEGEIPAERKGEQEGEGE-IEAKEADH 706
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 389 EGAQNQGkkaEGAQNQGKKAEGAQNQGKKVEGAQNQGKKAEGaQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGK-K 467
Cdd:TIGR00927 707 KGETEAE---EVEHEGETEAEGTEDEGEIETGEEGEEVEDEG-EGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEgE 782
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 468 AEGAQNQDKKAEGAQNQGRKAEGAQNQGRKAEGAQNQGKKAEGAPNQGKKAE---GAPNQGKKAEGtpNQGKKAEGTPNQ 544
Cdd:TIGR00927 783 IQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEqelNAENQGEAKQD--EKGVDGGGGSDG 860
|
....*
gi 14133249 545 GKKAE 549
Cdd:TIGR00927 861 GDSEE 865
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1338-1585 |
4.52e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 4.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1338 AAEEELQKSRVTVKHLEEIVEKLKGELESSDQVREHTLHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAAK 1417
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1418 SEAQKQSDELALVRQQLSEMKSHvedgdiagapaSSPEAPPAEQDPVQLKTQLEWTEAILEDEQTQRQKLTAEFEEAQTS 1497
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGRQ-----------PPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1498 ACRLQEELEKLRTAgplesseTEEASQLKERLEKEKKLTSDLGRAATRLQELLKTTQEQLAREKDTVKKLQEQLEKAEDG 1577
Cdd:COG4942 166 RAELEAERAELEAL-------LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
....*...
gi 14133249 1578 SSSKEGTS 1585
Cdd:COG4942 239 AAERTPAA 246
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
987-1188 |
4.72e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 4.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 987 QATSQVESKQNAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQASHRESEE---ALQKRLDEV 1063
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAelaELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1064 SRELCHTQSSHASLRADAEKAQEQQQQMAELHSK-----------LQSSEAEVRSKCEELSGLHGQLQEARAENSQLTER 1132
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPEdfldavrrlqyLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 14133249 1133 IRSIEALLEAGQARDAQDVQASQAEADQQQTRLKELESQVSGLEKEAIELREAVEQ 1188
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
1301-1577 |
5.61e-04 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 44.46 E-value: 5.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1301 QAECDQYRSILAETEGMLRDLQKSVEE----EEQVwRAKVGAAEEELQKSR-----------VTVKHLEEIVEKLKGELE 1365
Cdd:pfam06160 85 KKALDEIEELLDDIEEDIKQILEELDEllesEEKN-REEVEELKDKYRELRktllanrfsygPAIDELEKQLAEIEEEFS 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1366 SSDQVREHTLHLEA-----ELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAAKSEAQKQ---------SDELALVR 1431
Cdd:pfam06160 164 QFEELTESGDYLEArevleKLEEETDALEELMEDIPPLYEELKTELPDQLEELKEGYREMEEEgyalehlnvDKEIQQLE 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1432 QQLSEMKSHVEDGDIAGApasspeappaEQDPVQLKTQLEWTEAILEDE-------QTQRQKLTAEFEEAQTSACRLQEE 1504
Cdd:pfam06160 244 EQLEENLALLENLELDEA----------EEALEEIEERIDQLYDLLEKEvdakkyvEKNLPEIEDYLEHAEEQNKELKEE 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1505 LEKLRTAGPLESSETEEASQLKERLEK-EKKLTSDLGRAA------TRLQELLKTTQEQLAREKDTVKKLQEQLEKAEDG 1577
Cdd:pfam06160 314 LERVQQSYTLNENELERVRGLEKQLEElEKRYDEIVERLEekevaySELQEELEEILEQLEEIEEEQEEFKESLQSLRKD 393
|
|
| COG5281 |
COG5281 |
Phage-related minor tail protein [Mobilome: prophages, transposons]; |
318-688 |
5.97e-04 |
|
Phage-related minor tail protein [Mobilome: prophages, transposons];
Pssm-ID: 444092 [Multi-domain] Cd Length: 603 Bit Score: 44.60 E-value: 5.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 318 AEGAQNQAKKVEGAQNQGKKAEGAQNQGKKGEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKK 397
Cdd:COG5281 48 AAAAAASLAAAAAAAALAAAAAAAAAAAAADALAAALAEDAAAAAAAAEAALAALAAAALALAAAALAEAALAAAAAAAA 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 398 AEGAQNQGKKAEGAQNQGKKVEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQDKK 477
Cdd:COG5281 128 AAAAAAAAAAAAAAAAAEAAKAAAAAAAAAALAAAAAAAAAAAAAAAAAAALAAASAAAAAAAAKAAAEAAAEAAAAAEA 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 478 AEGAQNQGRKAEGAQNQGRKAEGAQNQGKKAEgapnQGKKAEGAPNQGKKAEGTPNQGKKAEGTPNQGKKAEGTPNQGKK 557
Cdd:COG5281 208 AAAAAAAAAEAAAAEAQALAAAALAEQAALAA----ASAAAQALAALAAAAAAAALALAAAAELALTAQAEAAAAAAAAA 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 558 AEGAQNQGKKAEGAQNQGKKAEGTPNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQgKK 637
Cdd:COG5281 284 AAAAQAAEAAAAAAEAQALAAAAAAAAAQLAAAAAAAAQALRAAAQALAALAQRALAAAALAAAAQEAALAAAAAAL-QA 362
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 14133249 638 AEGAQNQGKKVEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGQKG 688
Cdd:COG5281 363 ALEAAAAAAAAELAAAGDWAAGAKAALAEYADSATNVAAQVAQAATSAFSG 413
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
947-1575 |
6.75e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.57 E-value: 6.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 947 KEVQQLQGKIRTLQEQLENGPNTQLARLQQENSILRDALNQATSQVESKQNAELAKLRQELSKVSKELvekseavrqdeQ 1026
Cdd:TIGR00618 260 QLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLL-----------M 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1027 QRKALEAKAAAFEKQVLQLQASHRESEEALQK------RLDEVSRELCHTQSSHAsLRADAEKAQEQQQQMAELHSKLQS 1100
Cdd:TIGR00618 329 KRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAhevatsIREISCQQHTLTQHIHT-LQQQKTTLTQKLQSLCKELDILQR 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1101 SEAEVRSKCEELSGLHGQLQEARAENSQLTERIrsieALLEAGQARDAQDVQASQAEADQQQTRLKELESQVSglEKEAI 1180
Cdd:TIGR00618 408 EQATIDTRTSAFRDLQGQLAHAKKQQELQQRYA----ELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQ--TKEQI 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1181 ELREAveqqkvknndlREKNWKAMEALATAEQACKEK-----LHSLTQAKEESEKQLCLIEAQTMEALLALLPELSVLAQ 1255
Cdd:TIGR00618 482 HLQET-----------RKKAVVLARLLELQEEPCPLCgscihPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQ 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1256 -QNYTEWLQDLKEKGPTLLKHPPAPA----EPSSDLASKLREAEETQSTLQAECDQYRSILAETEGMLRDLQKSVEEEEQ 1330
Cdd:TIGR00618 551 lTSERKQRASLKEQMQEIQQSFSILTqcdnRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDV 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1331 vwRAKVGAAEEELQKSRVTVKHLEEIVEKLKgELESSDQVREHTLHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQ 1410
Cdd:TIGR00618 631 --RLHLQQCSQELALKLTALHALQLTLTQER-VREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLR 707
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1411 SQLDAAKsEAQKQSDELALVR-------QQLSEMKSHVEDGDIAGAPASSPEAPPAEQDPVQLKTQLEWTEAILEDEQTQ 1483
Cdd:TIGR00618 708 ELETHIE-EYDREFNEIENASsslgsdlAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAE 786
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1484 RQKLTAEFEEAQTSACRLQEELEKLRTAGPLESSET-----EEASQLKERLEKEKKLTSDLgraaTRLQELLKTTQEQLA 1558
Cdd:TIGR00618 787 IQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQcetlvQEEEQFLSRLEEKSATLGEI----THQLLKYEECSKQLA 862
|
650
....*....|....*..
gi 14133249 1559 REKDTVKKLQEQLEKAE 1575
Cdd:TIGR00618 863 QLTQEQAKIIQLSDKLN 879
|
|
| PRK05035 |
PRK05035 |
electron transport complex protein RnfC; Provisional |
426-679 |
6.87e-04 |
|
electron transport complex protein RnfC; Provisional
Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 44.17 E-value: 6.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 426 KKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAE-GAQNQDKKAEGAQNQGRKAEGAQNQGRKAEGAQNQ 504
Cdd:PRK05035 465 EKAAREARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIkAGARPDNSAVIAAREARKAQARARQAEKQAAAAAD 544
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 505 GKKAEGApnqgkkAEGAPNQGKKAEGTPNQGKKAEGTPNQGKKAEgtpnqgkkAEGAQNQGKKAEGAQNQGKKAEGTPN- 583
Cdd:PRK05035 545 PKKAAVA------AAIARAKAKKAAQQAANAEAEEEVDPKKAAVA--------AAIARAKAKKAAQQAASAEPEEQVAEv 610
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 584 QGKKAEGAQNQGK-KAEGAQNQGKKAEGAQNQGKKAEGAqnqgkkAEGAQNQGKKAegAQNQGKKVEGAQNQGKKAEGAq 662
Cdd:PRK05035 611 DPKKAAVAAAIARaKAKKAEQQANAEPEEPVDPRKAAVA------AAIARAKARKA--AQQQANAEPEEAEDPKKAAVA- 681
|
250
....*....|....*..
gi 14133249 663 nqgkkAEGAQNQGKKAE 679
Cdd:PRK05035 682 -----AAIARAKAKKAA 693
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1462-1583 |
6.98e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 6.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1462 DPVQLKTQLEWTEAILEDEQTQRQKLTAEFEEAQTSACRLQEELEKLRTAgpLESSETEEASQLKERLEKEKKLTSDLGR 1541
Cdd:COG4913 282 RLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQ--IRGNGGDRLEQLEREIERLERELEERER 359
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 14133249 1542 AATRLQELLKTTQEQLAREKDTVKKLQEQLEKAEDGSSSKEG 1583
Cdd:COG4913 360 RRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELE 401
|
|
| PRK05035 |
PRK05035 |
electron transport complex protein RnfC; Provisional |
376-609 |
8.64e-04 |
|
electron transport complex protein RnfC; Provisional
Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 44.17 E-value: 8.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 376 KKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQN-QGKKVEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQ 454
Cdd:PRK05035 465 EKAAREARHKKAAEARAAKDKDAVAAALARVKAKKAAAtQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAAD 544
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 455 GKKAEG----AQNQGKKAEGAQNQDKKAEGAQNQGRK--AEGAQNQGRKAEGAQNQGKKAEGAPNQGKK--AEGAPNQGK 526
Cdd:PRK05035 545 PKKAAVaaaiARAKAKKAAQQAANAEAEEEVDPKKAAvaAAIARAKAKKAAQQAASAEPEEQVAEVDPKkaAVAAAIARA 624
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 527 KAEGTPNQGKKAEGTPNQGKKAEgtpnqgKKAEGAQNQGKKAegAQNQGKKAEGTPNQGKKAEGAqnqgkkAEGAQNQGK 606
Cdd:PRK05035 625 KAKKAEQQANAEPEEPVDPRKAA------VAAAIARAKARKA--AQQQANAEPEEAEDPKKAAVA------AAIARAKAK 690
|
...
gi 14133249 607 KAE 609
Cdd:PRK05035 691 KAA 693
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
951-1178 |
9.09e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 43.73 E-value: 9.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 951 QLQGKIRTLQE--QLENGPNTQLARLQQENSILRDALNQATSQVESK---QNAELAKLRQELSKVSKELVEKSEAVRQDE 1025
Cdd:pfam07888 35 RLEECLQERAEllQAQEAANRQREKEKERYKRDREQWERQRRELESRvaeLKEELRQSREKHEELEEKYKELSASSEELS 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1026 QQRKALEAKAAAFEKQVLQLQASHRESEEALQKRLDEVSRELCHTQSSHASLRADAEKAQEqqqqmaeLHSKLQSSEAEV 1105
Cdd:pfam07888 115 EEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQ-------LQAKLQQTEEEL 187
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 14133249 1106 RSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQDvQASQAEADQQQTRLKELESQVSGLEKE 1178
Cdd:pfam07888 188 RSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAEN-EALLEELRSLQERLNASERKVEGLGEE 259
|
|
| PHA03169 |
PHA03169 |
hypothetical protein; Provisional |
419-609 |
1.27e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 43.04 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 419 EGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQDKK--AEGAQNQGRKAEGAQNQGR 496
Cdd:PHA03169 54 SGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEelASGLSPENTSGSSPESPAS 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 497 KAEGAQNQGKKAEGAPNQGKKAEGAPNQGKKAEGTPNQGKKAEGTPNQGKKAEGTPNQGKKAEGAQNQGKKAEGAQNQGK 576
Cdd:PHA03169 134 HSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGE 213
|
170 180 190
....*....|....*....|....*....|...
gi 14133249 577 KAEGTPNQGKKAEGAQNQGKKAEGAQNQGKKAE 609
Cdd:PHA03169 214 PQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPP 246
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
946-1213 |
1.27e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 43.66 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 946 VKE--VQQLQGKIRTLQEQLENgPNTQLARLqqensilRDALnQATSQVESKQNAELAKLRQELSKVSKeLVEKSEAVRQ 1023
Cdd:pfam10174 391 VKErkINVLQKKIENLQEQLRD-KDKQLAGL-------KERV-KSLQTDSSNTDTALTTLEEALSEKER-IIERLKEQRE 460
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1024 DEQQRKALEAKAAAFEKQVLQLQAShreseeALQKRLDEVSRELCHTQSSHASLRADAEKAQeqqqqmaelhSKLQSSEA 1103
Cdd:pfam10174 461 REDRERLEELESLKKENKDLKEKVS------ALQPELTEKESSLIDLKEHASSLASSGLKKD----------SKLKSLEI 524
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1104 EVRSKCEELSGLHGQLQEAR--AENSQLTERIRSIEALLEAGQARDAQDVQASQAEADQQQTRLKELESQVSGLEKEAIE 1181
Cdd:pfam10174 525 AVEQKKEECSKLENQLKKAHnaEEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAE 604
|
250 260 270
....*....|....*....|....*....|..
gi 14133249 1182 LrEAVEQQKVKNNDLREKNWKAMEALATAEQA 1213
Cdd:pfam10174 605 L-ESLTLRQMKEQNKKVANIKHGQQEMKKKGA 635
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1100-1529 |
1.30e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.79 E-value: 1.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1100 SSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQ----------------ARDAQDVQASQAEADQQQT 1163
Cdd:COG3096 289 ELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASdhlnlvqtalrqqekiERYQEDLEELTERLEEQEE 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1164 RLKELESQVSGLEKEAIELREAVEQQKVKNNDLREknwkAMEALATAEQACKEKLHSLTQAKEesekqLCLIEAqtmeal 1243
Cdd:COG3096 369 VVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQ----ALDVQQTRAIQYQQAVQALEKARA-----LCGLPD------ 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1244 lallpelsvLAQQNYTEWLQDLKEKgptllkhppapaepSSDLASKLREAEETQSTLQAECDQY-------RSILAETE- 1315
Cdd:COG3096 434 ---------LTPENAEDYLAAFRAK--------------EQQATEEVLELEQKLSVADAARRQFekayelvCKIAGEVEr 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1316 --------GMLRDL--QKSVEEEEQVWRAKVGAAEEELQKSRVTVKHLEEIVEKLKGELESSDQVREHTLHLEAELEKhm 1385
Cdd:COG3096 491 sqawqtarELLRRYrsQQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEE-- 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1386 aaasaecqnyakevaglrqlLLESQSQLDAAKSEAQKQSDELALVRQQLSemkshvedgdiAGAPASSPEAPPAEQDPVQ 1465
Cdd:COG3096 569 --------------------LEEQAAEAVEQRSELRQQLEQLRARIKELA-----------ARAPAWLAAQDALERLREQ 617
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 14133249 1466 LKTQLEWTEAILEDEQTQRQK---LTAEFEEAQTSACRLQEELEKLRTAGpleSSETEEASQLKERL 1529
Cdd:COG3096 618 SGEALADSQEVTAAMQQLLERereATVERDELAARKQALESQIERLSQPG---GAEDPRLLALAERL 681
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
997-1227 |
1.36e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.41 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 997 NAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQlqaSHRESEEALQKRLDEVSRELCHTQSSHAS 1076
Cdd:PRK04863 836 EAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRLLPR---LNLLADETLADRVEEIREQLDEAEEAKRF 912
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1077 LRadaekaqeqqqQMAELHSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRsieALLEAGQAR------DAQD 1150
Cdd:PRK04863 913 VQ-----------QHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAF---ALTEVVQRRahfsyeDAAE 978
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 14133249 1151 VQASQAEADQQ-QTRLKELESQvsglekeaieLREAVEQQKVKNNDLREKNwkamEALATAEQACKEKLHSLTQAKEE 1227
Cdd:PRK04863 979 MLAKNSDLNEKlRQRLEQAEQE----------RTRAREQLRQAQAQLAQYN----QVLASLKSSYDAKRQMLQELKQE 1042
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1096-1582 |
1.37e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.51 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1096 SKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARdaqdVQASQAEADQQQTRLKELESQVS-- 1173
Cdd:PRK03918 210 NEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEK----IRELEERIEELKKEIEELEEKVKel 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1174 ----GLEKEAIELREAVEQQKVKNNDLrEKNWKAMEALATAEQACKEKLHSLTQAKEESEKQLCLIEAQTMEALLALLPE 1249
Cdd:PRK03918 286 kelkEKAEEYIKLSEFYEEYLDELREI-EKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELY 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1250 LSVLAQQNYTEWLQdlKEKGPtllkhppapaEPSSDLASKLREAEETQSTLQAECDQYRSILAETEGMLRDLQKSVEE-E 1328
Cdd:PRK03918 365 EEAKAKKEELERLK--KRLTG----------LTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEElK 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1329 EQVWRAKVGAAE--------------EELQKSRVTVKHLEEIVEKLKGELESSDQV--REHTLHLEAELEKHMAAASAEC 1392
Cdd:PRK03918 433 KAKGKCPVCGRElteehrkelleeytAELKRIEKELKEIEEKERKLRKELRELEKVlkKESELIKLKELAEQLKELEEKL 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1393 QNYAKEvaglrqlllesqsQLDAAKSEAQKQSDELALVRQQLSEMKSHVEDGDiagapasspeappaeqdpvQLKTQLEW 1472
Cdd:PRK03918 513 KKYNLE-------------ELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLE-------------------ELKKKLAE 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1473 TEAILEDEQTQRQKLTAEFEE-AQTSACRLQEELEKLRTAGPlESSETEEASQLKERLEKEKKltsdlgraatRLQELLK 1551
Cdd:PRK03918 561 LEKKLDELEEELAELLKELEElGFESVEELEERLKELEPFYN-EYLELKDAEKELEREEKELK----------KLEEELD 629
|
490 500 510
....*....|....*....|....*....|.
gi 14133249 1552 TTQEQLAREKDTVKKLQEQLEKAEDGSSSKE 1582
Cdd:PRK03918 630 KAFEELAETEKRLEELRKELEELEKKYSEEE 660
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
994-1576 |
1.74e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.03 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 994 SKQNAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQASHRESEEALQKRLDEVSRELCHTQSS 1073
Cdd:TIGR00618 162 SKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQS 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1074 HASLRADAEKAQEQqqqmaelhSKLQSSEAEVRSKCEELSGL---HGQLQEARAENSQLTERIRSIEALLEAGQARDA-- 1148
Cdd:TIGR00618 242 HAYLTQKREAQEEQ--------LKKQQLLKQLRARIEELRAQeavLEETQERINRARKAAPLAAHIKAVTQIEQQAQRih 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1149 -----------------QDVQASQAEADQQQTRLKELESQVSGLEKEAiELREAVEQQKVKNNDLREKNWKAMEALATAE 1211
Cdd:TIGR00618 314 telqskmrsrakllmkrAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAH-EVATSIREISCQQHTLTQHIHTLQQQKTTLT 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1212 QACKEKLHSLTQAKEESEKQLCLIEAQTMEALLALLPELSVLAQQNYTEWLQDLKEKGPTLLKHPPAPAEpssDLASKLR 1291
Cdd:TIGR00618 393 QKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQ---ESAQSLK 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1292 EAEETQSTLQAECDQYRSILAETEGMLRDLQKS---VEEEEQVWRAKV------GAAEEELQKSRVTVKHLEEIVEKLKG 1362
Cdd:TIGR00618 470 EREQQLQTKEQIHLQETRKKAVVLARLLELQEEpcpLCGSCIHPNPARqdidnpGPLTRRMQRGEQTYAQLETSEEDVYH 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1363 ELESSDQvREHTLHLEAELEKHMAAASAECQNYAKEVA-GLRQLLLESQSQLDAaksEAQKQSDELALVRQQLSEMKSHV 1441
Cdd:TIGR00618 550 QLTSERK-QRASLKEQMQEIQQSFSILTQCDNRSKEDIpNLQNITVRLQDLTEK---LSEAEDMLACEQHALLRKLQPEQ 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1442 EDGDIagapasSPEAPPAEQDPVQLKTQLEWTE-AILEDEQTQRQKLTAEFEEAQTSACRLQEELEKLRTAGPLESSETE 1520
Cdd:TIGR00618 626 DLQDV------RLHLQQCSQELALKLTALHALQlTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEML 699
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 14133249 1521 EASQLKERLEKEKKLTSDlgRAATRLQELLKTTQEQLAREKDTVKKLQEQLEKAED 1576
Cdd:TIGR00618 700 AQCQTLLRELETHIEEYD--REFNEIENASSSLGSDLAAREDALNQSLKELMHQAR 753
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1334-1576 |
2.22e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 2.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1334 AKVGAAEEELQKSrvtVKHLEEIVEKLKGELESSDQVREHTLHLEA----ELEKHMAAASAECQNYAKEVAGLRQLLLES 1409
Cdd:TIGR02168 189 DRLEDILNELERQ---LKSLERQAEKAERYKELKAELRELELALLVlrleELREELEELQEELKEAEEELEELTAELQEL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1410 QSQLDAAKSEAQKQSDELALVRQQLSEMKSHVEDgdiagapasspeappAEQDPVQLKTQLEWTEAILEDEQTQRQKLTA 1489
Cdd:TIGR02168 266 EEKLEELRLEVSELEEEIEELQKELYALANEISR---------------LEQQKQILRERLANLERQLEELEAQLEELES 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1490 EFEEAQTSACRLQEELEKLRtagplessetEEASQLKERLEKEKKLTSDLGRAATRLQELLKTTQEQLAREKDTVKKLQE 1569
Cdd:TIGR02168 331 KLDELAEELAELEEKLEELK----------EELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNN 400
|
....*..
gi 14133249 1570 QLEKAED 1576
Cdd:TIGR02168 401 EIERLEA 407
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
993-1437 |
2.37e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 42.42 E-value: 2.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 993 ESKQNAELAKlrqELSKVSKELVEKSEAVRQD---EQQRKALEAKAAAFEKQVLQLQASHRESEEALQKRLDEVSRELCH 1069
Cdd:pfam05557 46 ESDRNQELQK---RIRLLEKREAEAEEALREQaelNRLKKKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQR 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1070 TQSSHASLRADAEKaqeqqqqmaelhskLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAgQARDAQ 1149
Cdd:pfam05557 123 AELELQSTNSELEE--------------LQERLDLLKAKASEAEQLRQNLEKQQSSLAEAEQRIKELEFEIQS-QEQDSE 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1150 DVQASQAEadqqQTRLKELESQVSGLEKEAIELREAVEqqkvkNNDLREKNWKAMEALATAEQACKEKLHSLTQAKEESE 1229
Cdd:pfam05557 188 IVKNSKSE----LARIPELEKELERLREHNKHLNENIE-----NKLLLKEEVEDLKRKLEREEKYREEAATLELEKEKLE 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1230 KQLCLIE--AQTMEALLALLpelsvlaqqnytewlQDLKEKGPTLLKHPPAPAEPSSDLASKLREAEETQSTLQAECDQY 1307
Cdd:pfam05557 259 QELQSWVklAQDTGLNLRSP---------------EDLSRRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQELAQY 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1308 RS-------ILAETEGMLRDLQKSV---EEEEQVWRAKVGAAEEEL------QKSRVTVKHLEEIVEKLK---GELESSD 1368
Cdd:pfam05557 324 LKkiedlnkKLKRHKALVRRLQRRVlllTKERDGYRAILESYDKELtmsnysPQLLERIEEAEDMTQKMQahnEEMEAQL 403
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 14133249 1369 QVREHTLH--------LEAELEKHMAAASAECQNYAKE-VAGLRQLLLESQSQLDaaKSEAQKQSDELALVRQQLSEM 1437
Cdd:pfam05557 404 SVAEEELGgykqqaqtLERELQALRQQESLADPSYSKEeVDSLRRKLETLELERQ--RLREQKNELEMELERRCLQGD 479
|
|
| PRK05035 |
PRK05035 |
electron transport complex protein RnfC; Provisional |
396-628 |
2.46e-03 |
|
electron transport complex protein RnfC; Provisional
Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 42.63 E-value: 2.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 396 KKAEGAQNQGKKAEGAQNQGKKVEGAQNQGKKAEGAQNQGKKAE-GAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQ 474
Cdd:PRK05035 465 EKAAREARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIkAGARPDNSAVIAAREARKAQARARQAEKQAAAAAD 544
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 475 DKKAEGAqnqgrkAEGAQNQGRKAEGAQNQGKKAEGAPNQGKK--AEGAPNQGKKAEGTPNQGKKAEGTPNQGKKaegtp 552
Cdd:PRK05035 545 PKKAAVA------AAIARAKAKKAAQQAANAEAEEEVDPKKAAvaAAIARAKAKKAAQQAASAEPEEQVAEVDPK----- 613
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 14133249 553 nqgKKAEGAQNQGKKAEGAQNQGKKAEGTPNQGKKAEGAqnqgkkAEGAQNQGKKAegAQNQGKKAEGAQNQGKKA 628
Cdd:PRK05035 614 ---KAAVAAAIARAKAKKAEQQANAEPEEPVDPRKAAVA------AAIARAKARKA--AQQQANAEPEEAEDPKKA 678
|
|
| Gag_spuma |
pfam03276 |
Spumavirus gag protein; |
264-414 |
2.56e-03 |
|
Spumavirus gag protein;
Pssm-ID: 460872 [Multi-domain] Cd Length: 614 Bit Score: 42.43 E-value: 2.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 264 QGKKAEGTPNQGKKAeGTPNQGKKAEGAQNQgkkvdtTPNQGKKVEGAPTQGRKAEGAQNQAKKVEGAQNQGKKAEGAQN 343
Cdd:pfam03276 479 PQIRASRGPGPGPSA-GEGRGGPANEGRGGP------CNAGGGNDCGANGQNDGGENIQNGGQELRSQGGQNLRSGGGQG 551
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 14133249 344 QGKKGegaqNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAegaqNQGKKAEGAQNQGKKAEGAQNQ 414
Cdd:pfam03276 552 QRWGE----GRGNRENENTENSEQRPREIQAGSGRPGNAGQGVKG----AAGQGGKGAAGRGGRGNGAGDQ 614
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1025-1198 |
3.05e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 3.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1025 EQQRKALEAKAAAFEKQVLQLQASHR-----ESEEALQKRLDEVSRELCHTQSSHASLRADAEKAQEQQQQMAELHSKLQ 1099
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFRQKNGlvdlsEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1100 SSEAevrskceeLSGLHGQLQEARAENSQLTER-------IRSIEALLEAGQARDAQDVQASQAEAdqqQTRLKELESQV 1172
Cdd:COG3206 261 QSPV--------IQQLRAQLAELEAELAELSARytpnhpdVIALRAQIAALRAQLQQEAQRILASL---EAELEALQARE 329
|
170 180
....*....|....*....|....*.
gi 14133249 1173 SGLEKEAIELREAVEQQKVKNNDLRE 1198
Cdd:COG3206 330 ASLQAQLAQLEARLAELPELEAELRR 355
|
|
| Gag_spuma |
pfam03276 |
Spumavirus gag protein; |
534-694 |
4.12e-03 |
|
Spumavirus gag protein;
Pssm-ID: 460872 [Multi-domain] Cd Length: 614 Bit Score: 41.66 E-value: 4.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 534 QGKKAEGTPNQGKKAeGTPNQGKKAEGAQnqGKKAEGAQNQgkkaEGTPNQGKKAEGAQNQGkkaegaqnQGKKAEGAQN 613
Cdd:pfam03276 479 PQIRASRGPGPGPSA-GEGRGGPANEGRG--GPCNAGGGND----CGANGQNDGGENIQNGG--------QELRSQGGQN 543
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 614 QGKKAEGAQNQGkkaegaQNQGKKAEGAQNQGKKVEGAQNQGKKAEGAQNQGKKAegaqNQGKKAEGAQNQGQKGEGAQN 693
Cdd:pfam03276 544 LRSGGGQGQRWG------EGRGNRENENTENSEQRPREIQAGSGRPGNAGQGVKG----AAGQGGKGAAGRGGRGNGAGD 613
|
.
gi 14133249 694 Q 694
Cdd:pfam03276 614 Q 614
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
943-1575 |
4.44e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 4.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 943 REHVKEVQQLQGKIRTLQEQLENGPNT------QLARLQQENSILRDALNQATSQVESKQNAE-----LAKLRQELSKVS 1011
Cdd:PRK04863 282 RVHLEEALELRRELYTSRRQLAAEQYRlvemarELAELNEAESDLEQDYQAASDHLNLVQTALrqqekIERYQADLEELE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1012 KELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQ---ASHRESEEALQKR----------LDEVsRELCHT-------- 1070
Cdd:PRK04863 362 ERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKsqlADYQQALDVQQTRaiqyqqavqaLERA-KQLCGLpdltadna 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1071 QSSHASLRAdaeKAQEQQQQMAELHSKLQSSEA--------------------------EVRSKC---EELSGLHGQLQE 1121
Cdd:PRK04863 441 EDWLEEFQA---KEQEATEELLSLEQKLSVAQAahsqfeqayqlvrkiagevsrseawdVARELLrrlREQRHLAEQLQQ 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1122 ARAENSQLTERI---RSIEALLEAGQARDAQDVQAS---QAEADQQQTRLKELESQVSGLEKEAIELREAVEQ--QKVKN 1193
Cdd:PRK04863 518 LRMRLSELEQRLrqqQRAERLLAEFCKRLGKNLDDEdelEQLQEELEARLESLSESVSEARERRMALRQQLEQlqARIQR 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1194 NDLREKNWKAM------------EALATAE------QACKEKLHSLTQAKEESEKQLCLIEAQtmeallallpeLSVLAQ 1255
Cdd:PRK04863 598 LAARAPAWLAAqdalarlreqsgEEFEDSQdvteymQQLLERERELTVERDELAARKQALDEE-----------IERLSQ 666
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1256 QNYTE--WLQDLKEK-GPTLLkhppapAEPSSDLAskLREAEETQSTL-QAEC-------DQYRSILAETEGMLRDLQkS 1324
Cdd:PRK04863 667 PGGSEdpRLNALAERfGGVLL------SEIYDDVS--LEDAPYFSALYgPARHaivvpdlSDAAEQLAGLEDCPEDLY-L 737
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1325 VEEEEQVWRAKVGAAEEeLQKSrVTVKHLEEiveklkgELESSdQVREHTLHLEAELEKHMAAASAECQNYAKEVAGLR- 1403
Cdd:PRK04863 738 IEGDPDSFDDSVFSVEE-LEKA-VVVKIADR-------QWRYS-RFPEVPLFGRAAREKRIEQLRAEREELAERYATLSf 807
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1404 -----QLLLESQSQLDAAKSEAQKQSD---ELALVRQQLSEMKSHVEDgdIAGAPASSPEAPPAEQDPVQLKTQLEWTEA 1475
Cdd:PRK04863 808 dvqklQRLHQAFSRFIGSHLAVAFEADpeaELRQLNRRRVELERALAD--HESQEQQQRSQLEQAKEGLSALNRLLPRLN 885
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1476 ILEDEQTQ------RQKLtAEFEEAQTSACRLQEELEKLRTAGPLESSETEEASQLKERLEKEKKLTSDLGRAATRLQEL 1549
Cdd:PRK04863 886 LLADETLAdrveeiREQL-DEAEEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEV 964
|
730 740 750
....*....|....*....|....*....|....
gi 14133249 1550 LKT--------TQEQLAREKDTVKKLQEQLEKAE 1575
Cdd:PRK04863 965 VQRrahfsyedAAEMLAKNSDLNEKLRQRLEQAE 998
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
214-428 |
5.67e-03 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 41.52 E-value: 5.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 214 KGNTPATGTTQGKKAEgTQNQSKKAEGAPNQGRKAEGTPNQGKKTEGTPNQGKKAEG-TPNQGKKAEGTPNQGKKAEGAQ 292
Cdd:TIGR00927 690 KGEQEGEGEIEAKEAD-HKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGeGEAEGKHEVETEGDRKETEHEG 768
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 293 NQGKKVDTTPNQGK--KVEGAPTQGRKAEGAQNQAKKVEGAQNQGKKAEGAQNQGKKGEGAQNQGKKAEGAQNQGKKAEG 370
Cdd:TIGR00927 769 ETEAEGKEDEDEGEiqAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQD 848
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 14133249 371 AQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKVEGAQNQGKKA 428
Cdd:TIGR00927 849 EKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQKQA 906
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
938-1065 |
6.92e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 40.39 E-value: 6.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 938 MQASYREHVKEVQQLQGKIRTLQEqLENGPNTQLARLQQensilrdalnqATSQVESKQNAELAKLRQELSKVSKELVEK 1017
Cdd:smart00787 156 LKEDYKLLMKELELLNSIKPKLRD-RKDALEEELRQLKQ-----------LEDELEDCDPTELDRAKEKLKKLLQEIMIK 223
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 14133249 1018 SEAVRQDEQQRKALEAKAAAFEKQVLQLQASHRESEEALQKR----LDEVSR 1065
Cdd:smart00787 224 VKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCrgftFKEIEK 275
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1097-1576 |
7.13e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 7.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1097 KLQSSEAEVRSKCEELSGlhgQLQEARAENSQLTERIRSIEALLEAGQARdAQDVQASQAEADQQQTRLKELESQVSGLE 1176
Cdd:PRK03918 183 KFIKRTENIEELIKEKEK---ELEEVLREINEISSELPELREELEKLEKE-VKELEELKEEIEELEKELESLEGSKRKLE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1177 KEAIELREAVEQQKVKNNDLREK--NWKAMEALATAEQACKEKLHSLTQAKEESEKQLCLIEAQTmeallallpelsvla 1254
Cdd:PRK03918 259 EKIRELEERIEELKKEIEELEEKvkELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEI--------------- 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1255 qQNYTEWLQDLKEKGPTLLKHPPAPAEPSSDLAsKLREAEETQSTLQAECDQYRSILAETEGmlRDLQKSVEEEEQVWRA 1334
Cdd:PRK03918 324 -NGIEERIKELEEKEERLEELKKKLKELEKRLE-ELEERHELYEEAKAKKEELERLKKRLTG--LTPEKLEKELEELEKA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1335 KVgAAEEELQKSRVTVKHLEEIVEKLKG---ELESSDQV-----REHTLHLEAELekhMAAASAECQNYAKEVAGLRQLL 1406
Cdd:PRK03918 400 KE-EIEEEISKITARIGELKKEIKELKKaieELKKAKGKcpvcgRELTEEHRKEL---LEEYTAELKRIEKELKEIEEKE 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1407 LESQSQLDAAKSEAQKQSDELAL--VRQQLSEMKSHVEDGDIAGAPASSPEAPPAEQDPVQLKTQLEWTEAILEDEQTQR 1484
Cdd:PRK03918 476 RKLRKELRELEKVLKKESELIKLkeLAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELK 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1485 QKLTAEFEEAQTSACRLQEELEKLRTAGplESSETEEASQLKERLEKEKKLTSdlgraatrlqelLKTTQEQLAREKDTV 1564
Cdd:PRK03918 556 KKLAELEKKLDELEEELAELLKELEELG--FESVEELEERLKELEPFYNEYLE------------LKDAEKELEREEKEL 621
|
490
....*....|..
gi 14133249 1565 KKLQEQLEKAED 1576
Cdd:PRK03918 622 KKLEEELDKAFE 633
|
|
| PHA03169 |
PHA03169 |
hypothetical protein; Provisional |
319-515 |
8.88e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 40.34 E-value: 8.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 319 EGAQNQAKKVEGAQNQGKKAEGAQNQgKKGEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKA 398
Cdd:PHA03169 54 SGPQVRAVAEQGHRQTESDTETAEES-RHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPA 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 399 EGAQNQGKKAEGAQNQGKKVEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQDKKA 478
Cdd:PHA03169 133 SHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPG 212
|
170 180 190
....*....|....*....|....*....|....*..
gi 14133249 479 EGAQNQGRKAEGAQNQGRKAEGAQNQGKKAEGAPNQG 515
Cdd:PHA03169 213 EPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFPG 249
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
874-1108 |
8.88e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 8.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 874 LKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMAAEKAkaaageakvkkQLVAREQEITAVQARMqasyREHVKEVQQLQ 953
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALAR-----------RIRALEQELAALEAEL----AELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 954 GKIRTLQEQLENgpntQLARLQQENSILRDALnqatsQVESKQNAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEA 1033
Cdd:COG4942 97 AELEAQKEELAE----LLRALYRLGRQPPLAL-----LLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 14133249 1034 KAAAFEKQVLQLQASHRESEEALQKRLDEVSRELCHTQSSHASLRADAEKAQEQQQQMAELHSKLQSSEAEVRSK 1108
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1318-1573 |
9.18e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.71 E-value: 9.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1318 LRDLQKSVEEEEQVwrakVGAAEEELQKSRVTVKHLEEIVEKLKGELESSDQVREhTLHLEAeLEKHMAAASAEcqnYAK 1397
Cdd:COG3096 356 LEELTERLEEQEEV----VEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALD-VQQTRA-IQYQQAVQALE---KAR 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1398 EVAGLRQLLLES-QSQLDAAKSEAQKQSDELALVRQQLSEMKSHVEDGDIA----GAPASSPEAPPAEQDPVQLKTQLEW 1472
Cdd:COG3096 427 ALCGLPDLTPENaEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAyelvCKIAGEVERSQAWQTARELLRRYRS 506
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14133249 1473 TEAILEDEQTQRQKLtAEFE---EAQTSACRLQEELEKlRTAGPLESSET-----EEASQLKERLEKEKKLTSDLGRAAT 1544
Cdd:COG3096 507 QQALAQRLQQLRAQL-AELEqrlRQQQNAERLLEEFCQ-RIGQQLDAAEEleellAELEAQLEELEEQAAEAVEQRSELR 584
|
250 260
....*....|....*....|....*....
gi 14133249 1545 RLQELLKTTQEQLAREKDTVKKLQEQLEK 1573
Cdd:COG3096 585 QQLEQLRARIKELAARAPAWLAAQDALER 613
|
|
| |
