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Conserved domains on  [gi|8978347|dbj|BAA98200|]
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cell division related protein-like [Arabidopsis thaliana]

Protein Classification

J and SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 13424958)

J and SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein may play crucial roles in protein translation, folding, unfolding, translocation, and degradation and may bind DNA and function as a transcription factor

CATH:  1.20.58.1880|1.10.287.110
Gene Ontology:  GO:0006355|GO:0003677|GO:0003700|GO:0006457
PubMed:  8882580|35729039|9644977|8016869|15170475
SCOP:  4000317|4000605

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ZUO1 super family cl34965
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / ...
 98-422 7.08e-43

Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG5269:

Pssm-ID: 227594 [Multi-domain]  Cd Length: 379  Bit Score: 159.04  E-value: 7.08e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347   98 QHDHYALLGLGNLRYLATDDQIRKSYRDAALKHHPDKLATLLLLEEteeakqakkdeiESHFKLIQEAYEVLMDSTKRRI 177
Cdd:COG5269  42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGC------------DEFFKLIQKAREVLGDRKLRLQ 109

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347  178 FDSTDeFDDKVPTD--CAPQDFFKVFGPAFKRNARWS-NSPLPDLGDENTPLKEVDRFYSTWYTFKSWREFPEEEEHDIE 254
Cdd:COG5269 110 YDSND-FDADVPPPriYTPDEFFEVWEPVFEREARFSkKQPVPSLGPSDSSLKEVEEFYEFWSNFDSWRTFEPLDEDYPD 188

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347  255 QAESREEKRWMERENARKTQKARKEEYARIRTLVDNAYKKDIRIQKRKDDEKAKKLQKK-------EAKVMAKRQQEEAA 327
Cdd:COG5269 189 DMEERDRKRYSEAKNREKRAKLKNQDNARLKRLVQIAKKRDPRIKSFKEQEKEMKKIRKwereagaRLKALAALKGKAEA 268

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347  328 AAAIEEEKRRKEEEAKRAAEAAQLHKRAKEREKKLLRKERSRLRVLSAPVLSQRLlgisDEHVEDLCMSLNTEQLRKLCD 407
Cdd:COG5269 269 KNKAEIEAEALASATAVKKKAKEVMKKALKMEKKAIKNAAKDADYFGDADKAEHI----DEDVDLIMDKLGDEELGQLAA 344

                       330
                ....*....|....*
gi 8978347  408 KMeNKEGMALAKVIK 422
Cdd:COG5269 345 DI-KAEAAGAAAVFD 358
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 607-653 1.80e-05

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


:

Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 42.18  E-value: 1.80e-05
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*..
gi 8978347  607 WSAVQERALVQALKTFPKEtnqRWERVATAVPGKTMNQCKKKFADLK 653
Cdd:cd00167   2 WTEEEDELLLEAVKKYGKN---NWEKIAKELPGRTPKQCRERWRNLL 45
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 476-516 2.75e-03

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


:

Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 36.01  E-value: 2.75e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 8978347  476 PWSKEEIDMLRKGTTKFPKGtsqRWEVISEYIGtGRSVEEI 516
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGKN---NWEKIAKELP-GRTPKQC 37
 
Name Accession Description Interval E-value
ZUO1 COG5269
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / ...
 98-422 7.08e-43

Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227594 [Multi-domain]  Cd Length: 379  Bit Score: 159.04  E-value: 7.08e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347   98 QHDHYALLGLGNLRYLATDDQIRKSYRDAALKHHPDKLATLLLLEEteeakqakkdeiESHFKLIQEAYEVLMDSTKRRI 177
Cdd:COG5269  42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGC------------DEFFKLIQKAREVLGDRKLRLQ 109

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347  178 FDSTDeFDDKVPTD--CAPQDFFKVFGPAFKRNARWS-NSPLPDLGDENTPLKEVDRFYSTWYTFKSWREFPEEEEHDIE 254
Cdd:COG5269 110 YDSND-FDADVPPPriYTPDEFFEVWEPVFEREARFSkKQPVPSLGPSDSSLKEVEEFYEFWSNFDSWRTFEPLDEDYPD 188

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347  255 QAESREEKRWMERENARKTQKARKEEYARIRTLVDNAYKKDIRIQKRKDDEKAKKLQKK-------EAKVMAKRQQEEAA 327
Cdd:COG5269 189 DMEERDRKRYSEAKNREKRAKLKNQDNARLKRLVQIAKKRDPRIKSFKEQEKEMKKIRKwereagaRLKALAALKGKAEA 268

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347  328 AAAIEEEKRRKEEEAKRAAEAAQLHKRAKEREKKLLRKERSRLRVLSAPVLSQRLlgisDEHVEDLCMSLNTEQLRKLCD 407
Cdd:COG5269 269 KNKAEIEAEALASATAVKKKAKEVMKKALKMEKKAIKNAAKDADYFGDADKAEHI----DEDVDLIMDKLGDEELGQLAA 344

                       330
                ....*....|....*
gi 8978347  408 KMeNKEGMALAKVIK 422
Cdd:COG5269 345 DI-KAEAAGAAAVFD 358
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 100-179 4.06e-17

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 75.59  E-value: 4.06e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347    100 DHYALLGLGNLrylATDDQIRKSYRDAALKHHPDKLatlllleeteeakqAKKDEIESHFKLIQEAYEVLMDSTKRRIFD 179
Cdd:pfam00226   1 DYYEILGVSPD---ASDEEIKKAYRKLALKYHPDKN--------------PGDPEAEEKFKEINEAYEVLSDPEKRAIYD 63
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 100-171 1.12e-12

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 62.95  E-value: 1.12e-12
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 8978347  100 DHYALLGLgnlRYLATDDQIRKSYRDAALKHHPDKLAtlllleeteeakqaKKDEIESHFKLIQEAYEVLMD 171
Cdd:cd06257   1 DYYDILGV---PPDASDEEIKKAYRKLALKYHPDKNP--------------DDPEAEEKFKEINEAYEVLSD 55
DnaJ smart00271
DnaJ molecular chaperone homology domain;
100-174 9.56e-12

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 60.33  E-value: 9.56e-12
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 8978347     100 DHYALLGLGNLrylATDDQIRKSYRDAALKHHPDKLatlllleeteeakQAKKDEIESHFKLIQEAYEVLMDSTK 174
Cdd:smart00271   2 DYYEILGVPRD---ASLDEIKKAYRKLALKYHPDKN-------------PGDKEEAEEKFKEINEAYEVLSDPEK 60
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 100-179 1.16e-11

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 66.71  E-value: 1.16e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347   100 DHYALLGLG-NlrylATDDQIRKSYRDAALKHHPDKLatlllleeteeakQAKKdEIESHFKLIQEAYEVLMDSTKRRIF 178
Cdd:PRK10767   5 DYYEVLGVSrN----ASEDEIKKAYRKLAMKYHPDRN-------------PGDK-EAEEKFKEIKEAYEVLSDPQKRAAY 66


                 .
gi 8978347   179 D 179
Cdd:PRK10767  67 D 67
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 607-653 1.80e-05

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 42.18  E-value: 1.80e-05
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*..
gi 8978347  607 WSAVQERALVQALKTFPKEtnqRWERVATAVPGKTMNQCKKKFADLK 653
Cdd:cd00167   2 WTEEEDELLLEAVKKYGKN---NWEKIAKELPGRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
607-653 1.24e-04

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 39.90  E-value: 1.24e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 8978347     607 WSAVQERALVQALKTFPKEtnqRWERVATAVPGKTMNQCKKKFADLK 653
Cdd:smart00717   4 WTEEEDELLIELVKKYGKN---NWEKIAKELPGRTAEQCRERWRNLL 47
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 607-649 5.49e-04

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 37.87  E-value: 5.49e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 8978347    607 WSAVQERALVQALKTFPKetnqRWERVATAVPGKTMNQCKKKF 649
Cdd:pfam00249   4 WTPEEDELLLEAVEKLGN----RWKKIAKLLPGRTDNQCKNRW 42
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 476-516 2.75e-03

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 36.01  E-value: 2.75e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 8978347  476 PWSKEEIDMLRKGTTKFPKGtsqRWEVISEYIGtGRSVEEI 516
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGKN---NWEKIAKELP-GRTPKQC 37
 
Name Accession Description Interval E-value
ZUO1 COG5269
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / ...
 98-422 7.08e-43

Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227594 [Multi-domain]  Cd Length: 379  Bit Score: 159.04  E-value: 7.08e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347   98 QHDHYALLGLGNLRYLATDDQIRKSYRDAALKHHPDKLATLLLLEEteeakqakkdeiESHFKLIQEAYEVLMDSTKRRI 177
Cdd:COG5269  42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGC------------DEFFKLIQKAREVLGDRKLRLQ 109

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347  178 FDSTDeFDDKVPTD--CAPQDFFKVFGPAFKRNARWS-NSPLPDLGDENTPLKEVDRFYSTWYTFKSWREFPEEEEHDIE 254
Cdd:COG5269 110 YDSND-FDADVPPPriYTPDEFFEVWEPVFEREARFSkKQPVPSLGPSDSSLKEVEEFYEFWSNFDSWRTFEPLDEDYPD 188

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347  255 QAESREEKRWMERENARKTQKARKEEYARIRTLVDNAYKKDIRIQKRKDDEKAKKLQKK-------EAKVMAKRQQEEAA 327
Cdd:COG5269 189 DMEERDRKRYSEAKNREKRAKLKNQDNARLKRLVQIAKKRDPRIKSFKEQEKEMKKIRKwereagaRLKALAALKGKAEA 268

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347  328 AAAIEEEKRRKEEEAKRAAEAAQLHKRAKEREKKLLRKERSRLRVLSAPVLSQRLlgisDEHVEDLCMSLNTEQLRKLCD 407
Cdd:COG5269 269 KNKAEIEAEALASATAVKKKAKEVMKKALKMEKKAIKNAAKDADYFGDADKAEHI----DEDVDLIMDKLGDEELGQLAA 344

                       330
                ....*....|....*
gi 8978347  408 KMeNKEGMALAKVIK 422
Cdd:COG5269 345 DI-KAEAAGAAAVFD 358
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 100-179 4.06e-17

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 75.59  E-value: 4.06e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347    100 DHYALLGLGNLrylATDDQIRKSYRDAALKHHPDKLatlllleeteeakqAKKDEIESHFKLIQEAYEVLMDSTKRRIFD 179
Cdd:pfam00226   1 DYYEILGVSPD---ASDEEIKKAYRKLALKYHPDKN--------------PGDPEAEEKFKEINEAYEVLSDPEKRAIYD 63
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 100-179 7.76e-14

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 68.96  E-value: 7.76e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347  100 DHYALLGLGNLrylATDDQIRKSYRDAALKHHPDKLATLLlleeteeakqakkdEIESHFKLIQEAYEVLMDSTKRRIFD 179
Cdd:COG0484   1 DYYEILGVSRD---ASAEEIKKAYRKLAKKYHPDRNPGDP--------------EAEEKFKEINEAYEVLSDPEKRAAYD 63
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 100-171 1.12e-12

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 62.95  E-value: 1.12e-12
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 8978347  100 DHYALLGLgnlRYLATDDQIRKSYRDAALKHHPDKLAtlllleeteeakqaKKDEIESHFKLIQEAYEVLMD 171
Cdd:cd06257   1 DYYDILGV---PPDASDEEIKKAYRKLALKYHPDKNP--------------DDPEAEEKFKEINEAYEVLSD 55
DnaJ smart00271
DnaJ molecular chaperone homology domain;
100-174 9.56e-12

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 60.33  E-value: 9.56e-12
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 8978347     100 DHYALLGLGNLrylATDDQIRKSYRDAALKHHPDKLatlllleeteeakQAKKDEIESHFKLIQEAYEVLMDSTK 174
Cdd:smart00271   2 DYYEILGVPRD---ASLDEIKKAYRKLALKYHPDKN-------------PGDKEEAEEKFKEINEAYEVLSDPEK 60
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 100-179 1.16e-11

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 66.71  E-value: 1.16e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347   100 DHYALLGLG-NlrylATDDQIRKSYRDAALKHHPDKLatlllleeteeakQAKKdEIESHFKLIQEAYEVLMDSTKRRIF 178
Cdd:PRK10767   5 DYYEVLGVSrN----ASEDEIKKAYRKLAMKYHPDRN-------------PGDK-EAEEKFKEIKEAYEVLSDPQKRAAY 66


                 .
gi 8978347   179 D 179
Cdd:PRK10767  67 D 67
CbpA COG2214
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];
100-179 9.19e-11

Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];


Pssm-ID: 441816 [Multi-domain]  Cd Length: 91  Bit Score: 58.58  E-value: 9.19e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347  100 DHYALLGL--GnlrylATDDQIRKSYRDAALKHHPDKLatlllleeteeakQAKKDEIESHFKLIQEAYEVLMDSTKRRI 177
Cdd:COG2214   6 DHYAVLGVppD-----ASLEEIRQAYRRLAKLLHPDRG-------------GELKALAEELFQRLNEAYEVLSDPERRAE 67


                ..
gi 8978347  178 FD 179
Cdd:COG2214  68 YD 69
PRK14281 PRK14281
chaperone protein DnaJ; Provisional
 97-179 2.02e-10

chaperone protein DnaJ; Provisional


Pssm-ID: 237657 [Multi-domain]  Cd Length: 397  Bit Score: 63.29  E-value: 2.02e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347    97 LQHDHYALLGLGNLrylATDDQIRKSYRDAALKHHPDKlatlllleeteeakQAKKDEIESHFKLIQEAYEVLMDSTKRR 176
Cdd:PRK14281   1 MKRDYYEVLGVSRS---ADKDEIKKAYRKLALKYHPDK--------------NPDNKEAEEHFKEVNEAYEVLSNDDKRR 63


                 ...
gi 8978347   177 IFD 179
Cdd:PRK14281  64 RYD 66
PRK14290 PRK14290
chaperone protein DnaJ; Provisional
 100-185 6.01e-10

chaperone protein DnaJ; Provisional


Pssm-ID: 172778 [Multi-domain]  Cd Length: 365  Bit Score: 61.49  E-value: 6.01e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347   100 DHYALLGLGNLrylATDDQIRKSYRDAALKHHPDklatlllleeteeAKQAKKDEIESHFKLIQEAYEVLMDSTKRRIFD 179
Cdd:PRK14290   4 DYYKILGVDRN---ASQEDIKKAFRELAKKWHPD-------------LHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYD 67


                 ....*.
gi 8978347   180 STDEFD 185
Cdd:PRK14290  68 QTGTVD 73
PRK14278 PRK14278
chaperone protein DnaJ; Provisional
 100-179 1.98e-09

chaperone protein DnaJ; Provisional


Pssm-ID: 237654 [Multi-domain]  Cd Length: 378  Bit Score: 60.07  E-value: 1.98e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347   100 DHYALLGLgnlRYLATDDQIRKSYRDAALKHHPDKLATlllleeteeakqakkDEIESHFKLIQEAYEVLMDSTKRRIFD 179
Cdd:PRK14278   4 DYYGLLGV---SRNASDAEIKRAYRKLARELHPDVNPD---------------EEAQEKFKEISVAYEVLSDPEKRRIVD 65
PRK14294 PRK14294
chaperone protein DnaJ; Provisional
 100-179 4.83e-09

chaperone protein DnaJ; Provisional


Pssm-ID: 237664 [Multi-domain]  Cd Length: 366  Bit Score: 58.62  E-value: 4.83e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347   100 DHYALLGLGNLrylATDDQIRKSYRDAALKHHPDklatlllleeteeaKQAKKDEIESHFKLIQEAYEVLMDSTKRRIFD 179
Cdd:PRK14294   5 DYYEILGVTRD---ASEEEIKKSYRKLAMKYHPD--------------RNPGDKEAEELFKEAAEAYEVLSDPKKRGIYD 67
PRK14282 PRK14282
chaperone protein DnaJ; Provisional
 100-208 6.90e-09

chaperone protein DnaJ; Provisional


Pssm-ID: 184603 [Multi-domain]  Cd Length: 369  Bit Score: 58.27  E-value: 6.90e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347   100 DHYALLGLGNLrylATDDQIRKSYRDAALKHHPDKLATlllleeteeakqaKKDEIESHFKLIQEAYEVLMDSTKRRIFD 179
Cdd:PRK14282   5 DYYEILGVSRN---ATQEEIKRAYKRLVKEWHPDRHPE-------------NRKEAEQKFKEIQEAYEVLSDPQKRAMYD 68

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 8978347   180 STDEFDDKVPTDCAP------QDFFKVFGPAFKRN 208
Cdd:PRK14282  69 RFGYVGEQPPYQETEsgggffEDIFKDFENIFNRD 103
PRK14291 PRK14291
chaperone protein DnaJ; Provisional
 98-233 7.45e-09

chaperone protein DnaJ; Provisional


Pssm-ID: 237661 [Multi-domain]  Cd Length: 382  Bit Score: 58.24  E-value: 7.45e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347    98 QHDHYALLGLGNLrylATDDQIRKSYRDAALKHHPDKLatlllleeteeakqaKKDEIESHFKLIQEAYEVLMDSTKRRI 177
Cdd:PRK14291   2 KKDYYEILGVSRN---ATQEEIKKAYRRLARKYHPDFN---------------KNPEAEEKFKEINEAYQVLSDPEKRKL 63

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 8978347   178 FDSTDEfddkvptdcapqDFFKVFGPAFKRNARWSNSPLPDLGDentPLKEVDRFY 233
Cdd:PRK14291  64 YDQFGH------------AAFSGSGQQQQGQEGFSDFGGGNIED---ILEDVFDIF 104
PRK14297 PRK14297
molecular chaperone DnaJ;
98-186 1.07e-08

molecular chaperone DnaJ;


Pssm-ID: 184611 [Multi-domain]  Cd Length: 380  Bit Score: 57.49  E-value: 1.07e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347    98 QHDHYALLGLgnlRYLATDDQIRKSYRDAALKHHPDKlatlllleeteeaKQAKKdEIESHFKLIQEAYEVLMDSTKRRI 177
Cdd:PRK14297   3 SKDYYEVLGL---EKGASDDEIKKAFRKLAIKYHPDK-------------NKGNK-EAEEKFKEINEAYQVLSDPQKKAQ 65

                         90
                 ....*....|.
gi 8978347   178 FDS--TDEFDD 186
Cdd:PRK14297  66 YDQfgTADFNG 76
PRK14298 PRK14298
chaperone protein DnaJ; Provisional
 100-179 2.05e-08

chaperone protein DnaJ; Provisional


Pssm-ID: 184612 [Multi-domain]  Cd Length: 377  Bit Score: 56.78  E-value: 2.05e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347   100 DHYALLGLGNLrylATDDQIRKSYRDAALKHHPDKLatlllleeteeakqaKKDEIESHFKLIQEAYEVLMDSTKRRIFD 179
Cdd:PRK14298   6 DYYEILGLSKD---ASVEDIKKAYRKLAMKYHPDKN---------------KEPDAEEKFKEISEAYAVLSDAEKRAQYD 67
PRK14284 PRK14284
chaperone protein DnaJ; Provisional
 100-179 2.97e-08

chaperone protein DnaJ; Provisional


Pssm-ID: 237658 [Multi-domain]  Cd Length: 391  Bit Score: 56.39  E-value: 2.97e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347   100 DHYALLGLGNLrylATDDQIRKSYRDAALKHHPDKLATLLlleeteeakqakkdEIESHFKLIQEAYEVLMDSTKRRIFD 179
Cdd:PRK14284   2 DYYTILGVSKT---ASPEEIKKAYRKLAVKYHPDKNPGDA--------------EAEKRFKEVSEAYEVLSDAQKRESYD 64
PRK14299 PRK14299
chaperone protein DnaJ; Provisional
 100-180 3.60e-08

chaperone protein DnaJ; Provisional


Pssm-ID: 237667 [Multi-domain]  Cd Length: 291  Bit Score: 55.33  E-value: 3.60e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347   100 DHYALLGLGNLrylATDDQIRKSYRDAALKHHPDKLatlllleeteeakqaKKDEIESHFKLIQEAYEVLMDSTKRRIFD 179
Cdd:PRK14299   5 DYYAILGVPKN---ASQDEIKKAFKKLARKYHPDVN---------------KSPGAEEKFKEINEAYTVLSDPEKRRIYD 66


                 .
gi 8978347   180 S 180
Cdd:PRK14299  67 T 67
PRK14289 PRK14289
molecular chaperone DnaJ;
98-179 5.36e-08

molecular chaperone DnaJ;


Pssm-ID: 237660 [Multi-domain]  Cd Length: 386  Bit Score: 55.61  E-value: 5.36e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347    98 QHDHYALLGLGNLrylATDDQIRKSYRDAALKHHPDKlatlllleeTEEAKQAkkdeiESHFKLIQEAYEVLMDSTKRRI 177
Cdd:PRK14289   4 KRDYYEVLGVSKT---ATVDEIKKAYRKKAIQYHPDK---------NPGDKEA-----EEKFKEAAEAYDVLSDPDKRSR 66


                 ..
gi 8978347   178 FD 179
Cdd:PRK14289  67 YD 68
PRK14277 PRK14277
chaperone protein DnaJ; Provisional
 100-179 5.92e-08

chaperone protein DnaJ; Provisional


Pssm-ID: 184599 [Multi-domain]  Cd Length: 386  Bit Score: 55.19  E-value: 5.92e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347   100 DHYALLGLGNLrylATDDQIRKSYRDAALKHHPDklatlllleeteeaKQAKKDEIESHFKLIQEAYEVLMDSTKRRIFD 179
Cdd:PRK14277   6 DYYEILGVDRN---ATEEEIKKAYRRLAKKYHPD--------------LNPGDKEAEQKFKEINEAYEILSDPQKRAQYD 68
PRK14295 PRK14295
molecular chaperone DnaJ;
97-179 9.54e-08

molecular chaperone DnaJ;


Pssm-ID: 237665 [Multi-domain]  Cd Length: 389  Bit Score: 54.85  E-value: 9.54e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347    97 LQHDHYALLGLGNLrylATDDQIRKSYRDAALKHHPDklatlllleeteeakqAKKDEI--ESHFKLIQEAYEVLMDSTK 174
Cdd:PRK14295   7 IEKDYYKVLGVPKD---ATEAEIKKAYRKLAREYHPD----------------ANKGDAkaEERFKEISEAYDVLSDEKK 67


                 ....*
gi 8978347   175 RRIFD 179
Cdd:PRK14295  68 RKEYD 72
PRK14285 PRK14285
chaperone protein DnaJ; Provisional
 97-179 1.28e-07

chaperone protein DnaJ; Provisional


Pssm-ID: 172773 [Multi-domain]  Cd Length: 365  Bit Score: 54.23  E-value: 1.28e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347    97 LQHDHYALLGLGNLrylATDDQIRKSYRDAALKHHPDKLATlllleeteeakqakKDEIESHFKLIQEAYEVLMDSTKRR 176
Cdd:PRK14285   1 MKRDYYEILGLSKG---ASKDEIKKAYRKIAIKYHPDKNKG--------------NKEAESIFKEATEAYEVLIDDNKRA 63


                 ...
gi 8978347   177 IFD 179
Cdd:PRK14285  64 QYD 66
PRK14276 PRK14276
chaperone protein DnaJ; Provisional
 98-179 1.54e-07

chaperone protein DnaJ; Provisional


Pssm-ID: 237653 [Multi-domain]  Cd Length: 380  Bit Score: 53.94  E-value: 1.54e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347    98 QHDHYALLGLGNLrylATDDQIRKSYRDAALKHHPDKLatlllleeteeakqaKKDEIESHFKLIQEAYEVLMDSTKRRI 177
Cdd:PRK14276   3 NTEYYDRLGVSKD---ASQDEIKKAYRKLSKKYHPDIN---------------KEPGAEEKYKEVQEAYETLSDPQKRAA 64


                 ..
gi 8978347   178 FD 179
Cdd:PRK14276  65 YD 66
PRK14280 PRK14280
molecular chaperone DnaJ;
100-179 2.56e-07

molecular chaperone DnaJ;


Pssm-ID: 237656 [Multi-domain]  Cd Length: 376  Bit Score: 53.19  E-value: 2.56e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347   100 DHYALLGLGNLrylATDDQIRKSYRDAALKHHPDklatlllleeteEAKQAKKDEiesHFKLIQEAYEVLMDSTKRRIFD 179
Cdd:PRK14280   5 DYYEVLGVSKS---ASKDEIKKAYRKLSKKYHPD------------INKEEGADE---KFKEISEAYEVLSDDQKRAQYD 66
PRK14286 PRK14286
chaperone protein DnaJ; Provisional
 101-179 2.64e-07

chaperone protein DnaJ; Provisional


Pssm-ID: 172774 [Multi-domain]  Cd Length: 372  Bit Score: 53.07  E-value: 2.64e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 8978347   101 HYALLGLGNLrylATDDQIRKSYRDAALKHHPDKLATLLlleeteeakqakkdEIESHFKLIQEAYEVLMDSTKRRIFD 179
Cdd:PRK14286   6 YYDILGVSKS---ANDEEIKSAYRKLAIKYHPDKNKGNK--------------ESEEKFKEATEAYEILRDPKKRQAYD 67
PRK14301 PRK14301
chaperone protein DnaJ; Provisional
 98-179 2.81e-07

chaperone protein DnaJ; Provisional


Pssm-ID: 237668 [Multi-domain]  Cd Length: 373  Bit Score: 53.21  E-value: 2.81e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347    98 QHDHYALLGLGNLrylATDDQIRKSYRDAALKHHPDKlatlllleeteeakQAKKDEIESHFKLIQEAYEVLMDSTKRRI 177
Cdd:PRK14301   3 QRDYYEVLGVSRD---ASEDEIKKAYRKLALQYHPDR--------------NPDNPEAEQKFKEAAEAYEVLRDAEKRAR 65


                 ..
gi 8978347   178 FD 179
Cdd:PRK14301  66 YD 67
PTZ00037 PTZ00037
DnaJ_C chaperone protein; Provisional
 109-201 3.90e-07

DnaJ_C chaperone protein; Provisional


Pssm-ID: 240236 [Multi-domain]  Cd Length: 421  Bit Score: 52.90  E-value: 3.90e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347   109 NLRYLATDDQIRKSYRDAALKHHPDKLATLLLleeteeakqakkdeieshFKLIQEAYEVLMDSTKRRIFDSTDE---FD 185
Cdd:PTZ00037  35 NLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEK------------------FKEISRAYEVLSDPEKRKIYDEYGEeglEG 96

                         90
                 ....*....|....*.
gi 8978347   186 DKVPTDcaPQDFFKVF 201
Cdd:PTZ00037  97 GEQPAD--ASDLFDLI 110
PRK14292 PRK14292
chaperone protein DnaJ; Provisional
 100-179 5.13e-06

chaperone protein DnaJ; Provisional


Pssm-ID: 237662 [Multi-domain]  Cd Length: 371  Bit Score: 49.12  E-value: 5.13e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347   100 DHYALLGLGNLrylATDDQIRKSYRDAALKHHPDKLatlllleeteeakqaKKDEIESHFKLIQEAYEVLMDSTKRRIFD 179
Cdd:PRK14292   3 DYYELLGVSRT---ASADEIKSAYRKLALKYHPDRN---------------KEKGAAEKFAQINEAYAVLSDAEKRAHYD 64
PRK10266 PRK10266
curved DNA-binding protein;
100-179 1.19e-05

curved DNA-binding protein;


Pssm-ID: 182347 [Multi-domain]  Cd Length: 306  Bit Score: 47.89  E-value: 1.19e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347   100 DHYALLGLGnlrylATDD--QIRKSYRDAALKHHPDklatlllleeteeakQAKKDEIESHFKLIQEAYEVLMDSTKRRI 177
Cdd:PRK10266   5 DYYAIMGVK-----PTDDlkTIKTAYRRLARKYHPD---------------VSKEPDAEARFKEVAEAWEVLSDEQRRAE 64


                 ..
gi 8978347   178 FD 179
Cdd:PRK10266  65 YD 66
PRK14283 PRK14283
chaperone protein DnaJ; Provisional
 98-179 1.72e-05

chaperone protein DnaJ; Provisional


Pssm-ID: 184604 [Multi-domain]  Cd Length: 378  Bit Score: 47.51  E-value: 1.72e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347    98 QHDHYALLGLGNLrylATDDQIRKSYRDAALKHHPDklatlllleeteeakQAKKDEIESHFKLIQEAYEVLMDSTKRRI 177
Cdd:PRK14283   4 KRDYYEVLGVDRN---ADKKEIKKAYRKLARKYHPD---------------VSEEEGAEEKFKEISEAYAVLSDDEKRQR 65


                 ..
gi 8978347   178 FD 179
Cdd:PRK14283  66 YD 67
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 607-653 1.80e-05

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 42.18  E-value: 1.80e-05
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*..
gi 8978347  607 WSAVQERALVQALKTFPKEtnqRWERVATAVPGKTMNQCKKKFADLK 653
Cdd:cd00167   2 WTEEEDELLLEAVKKYGKN---NWEKIAKELPGRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
607-653 1.24e-04

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 39.90  E-value: 1.24e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 8978347     607 WSAVQERALVQALKTFPKEtnqRWERVATAVPGKTMNQCKKKFADLK 653
Cdd:smart00717   4 WTEEEDELLIELVKKYGKN---NWEKIAKELPGRTAEQCRERWRNLL 47
PRK14288 PRK14288
molecular chaperone DnaJ;
114-179 1.70e-04

molecular chaperone DnaJ;


Pssm-ID: 172776 [Multi-domain]  Cd Length: 369  Bit Score: 44.29  E-value: 1.70e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 8978347   114 ATDDQIRKSYRDAALKHHPDKlatlllleeteeakQAKKDEIESHFKLIQEAYEVLMDSTKRRIFD 179
Cdd:PRK14288  15 SNQETIKKSYRKLALKYHPDR--------------NAGDKEAEEKFKLINEAYGVLSDEKKRALYD 66
DjlA COG1076
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];
100-171 2.74e-04

DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440694 [Multi-domain]  Cd Length: 75  Bit Score: 39.78  E-value: 2.74e-04
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 8978347  100 DHYALLGLGNLrylATDDQIRKSYRDAALKHHPDKLATLLLleeteeakQAKKDEIESHFKLIQEAYEVLMD 171
Cdd:COG1076   5 DAFELLGLPPD---ADDAELKRAYRKLQREHHPDRLAAGLP--------EEEQRLALQKAAAINEAYETLKD 65
PRK14293 PRK14293
molecular chaperone DnaJ;
100-179 4.69e-04

molecular chaperone DnaJ;


Pssm-ID: 237663 [Multi-domain]  Cd Length: 374  Bit Score: 43.05  E-value: 4.69e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347   100 DHYALLGLGNLrylATDDQIRKSYRDAALKHHPDKLatlllleeteeakqaKKDEIESHFKLIQEAYEVLMDSTKRRIFD 179
Cdd:PRK14293   4 DYYEILGVSRD---ADKDELKRAYRRLARKYHPDVN---------------KEPGAEDRFKEINRAYEVLSDPETRARYD 65
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 607-649 5.49e-04

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 37.87  E-value: 5.49e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 8978347    607 WSAVQERALVQALKTFPKetnqRWERVATAVPGKTMNQCKKKF 649
Cdd:pfam00249   4 WTPEEDELLLEAVEKLGN----RWKKIAKLLPGRTDNQCKNRW 42
PRK14287 PRK14287
chaperone protein DnaJ; Provisional
 98-179 8.00e-04

chaperone protein DnaJ; Provisional


Pssm-ID: 237659 [Multi-domain]  Cd Length: 371  Bit Score: 42.30  E-value: 8.00e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347    98 QHDHYALLGLGNLrylATDDQIRKSYRDAALKHHPDKLatlllleeteeakqaKKDEIESHFKLIQEAYEVLMDSTKRRI 177
Cdd:PRK14287   3 KRDYYEVLGVDRN---ASVDEVKKAYRKLARKYHPDVN---------------KAPDAEDKFKEVKEAYDTLSDPQKKAH 64


                 ..
gi 8978347   178 FD 179
Cdd:PRK14287  65 YD 66
PRK14296 PRK14296
chaperone protein DnaJ; Provisional
 98-179 9.14e-04

chaperone protein DnaJ; Provisional


Pssm-ID: 237666 [Multi-domain]  Cd Length: 372  Bit Score: 42.24  E-value: 9.14e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347    98 QHDHYALLGLGNLrylATDDQIRKSYRDAALKHHPDKLatlllleeteeakqaKKDEIESHFKLIQEAYEVLMDSTKRRI 177
Cdd:PRK14296   3 KKDYYEVLGVSKT---ASEQEIRQAYRKLAKQYHPDLN---------------KSPDAHDKMVEINEAADVLLDKDKRKQ 64


                 ..
gi 8978347   178 FD 179
Cdd:PRK14296  65 YD 66
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 476-516 2.75e-03

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 36.01  E-value: 2.75e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 8978347  476 PWSKEEIDMLRKGTTKFPKGtsqRWEVISEYIGtGRSVEEI 516
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGKN---NWEKIAKELP-GRTPKQC 37
PRK14300 PRK14300
chaperone protein DnaJ; Provisional
 97-179 4.11e-03

chaperone protein DnaJ; Provisional


Pssm-ID: 172788 [Multi-domain]  Cd Length: 372  Bit Score: 40.00  E-value: 4.11e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8978347    97 LQHDHYALLGLGNLrylATDDQIRKSYRDAALKHHPDklatlllleeteeakQAKKDEIESHFKLIQEAYEVLMDSTKRR 176
Cdd:PRK14300   1 MSQDYYQILGVSKT---ASQADLKKAYLKLAKQYHPD---------------TTDAKDAEKKFKEINAAYDVLKDEQKRA 62


                 ...
gi 8978347   177 IFD 179
Cdd:PRK14300  63 AYD 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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