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Conserved domains on  [gi|9294370|dbj|BAB02266|]
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transcription factor X1-like protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
XH pfam03469
XH domain; The XH (rice gene X Homology) domain is found in a family of plant proteins ...
 504-634 5.63e-65

XH domain; The XH (rice gene X Homology) domain is found in a family of plant proteins including gene X. The molecular function of these proteins is unknown. However these proteins usually contain an XS domain that is also found in the PTGS protein SGS3. This domain contains a conserved glutamate residue that may be functionally important.


:

Pssm-ID: 460934 [Multi-domain]  Cd Length: 131  Bit Score: 209.75  E-value: 5.63e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370    504 KRMGELDTKPFMKAMRIKYCQEDLEDWAVEVIQLWEEYLKDPDWHPFKRIKLETAETivEVIDEDDEKLRTLKNELGDDA 583
Cdd:pfam03469   1 KRMGELDEKPFLNACKQKFSNEEAEVKAAELCSLWEEELKDPEWHPFKVVMVDGKHK--EVIDEDDEKLKELKEEYGEEV 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 9294370    584 YQAVANALLEINEYNPSGRYISSELWNFREDRKATLEEGVNSLLEQWNQAK 634
Cdd:pfam03469  79 YNAVTTALLELNEYNPSGRYPVPELWNFKEGRKATLKEGVDYILKQWKALK 129
RRM_like_XS cd12266
RNA recognition motif (RRM)-like XS domain found in plants; This XS (named after rice gene X ...
 120-227 4.00e-46

RNA recognition motif (RRM)-like XS domain found in plants; This XS (named after rice gene X and SGS3) domain is a single-stranded RNA-binding domain (RBD) and possesses a unique version of a RNA recognition motif (RRM) fold. It is conserved in a family of plant proteins including gene X and SGS3. Although its function is still unknown, the plant SGS3 proteins are thought to be involved in post-transcriptional gene silencing (PTGS) pathways. In addition, they contain a conserved aspartate residue that may be functionally important.


:

Pssm-ID: 409710  Cd Length: 107  Bit Score: 158.67  E-value: 4.00e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370  120 LVWPWKGVLVNIPTTsTEDGRSCTGESGPKLKDELIRrgFNPIRVRTVWDRFGHSGTGIVEFNRDWNGLQDALVFKKAYE 199
Cdd:cd12266   1 IVWPWMGIVVNTPTT-KDDNRKMEGGSNKELLERLIK--FGPTRVKPLWNPQGHTGTAIVKFNSDWNGFRNALRFEKAFE 77

                        90       100       110
                ....*....|....*....|....*....|
gi 9294370  200 GDGHGKKDW--LCGATDSSLYAWLANADDY 227
Cdd:cd12266  78 VDGHGKKDWrnKKGGRKSKLYGWLARADDY 107
zf-XS pfam03470
XS zinc finger domain; This domain is a putative nucleic acid binding zinc finger found in ...
 32-75 4.61e-17

XS zinc finger domain; This domain is a putative nucleic acid binding zinc finger found in proteins that also contain an XS domain.


:

Pssm-ID: 251981  Cd Length: 43  Bit Score: 74.86  E-value: 4.61e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 9294370     32 CPYCPDNKKKVGLYVDILQHASGVGNSqSKKRSLTEKASHRALA 75
Cdd:pfam03470   1 CPFCPGKKKQDYKYKDLLQHASGVGAS-SNRRSAKEKASHRALA 43
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 250-490 7.58e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 58.79  E-value: 7.58e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370  250 AEEEARKDQKLLQRLNFMVENKQYRLKKLQIKYSQdsvkLKYETEEKEKILRAYSEDLTGRQQKStdhfnrifADHEKQK 329
Cdd:COG1196 258 LEAELAELEAELEELRLELEELELELEEAQAEEYE----LLAELARLEQDIARLEERRRELEERL--------EELEEEL 325

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370  330 VQLESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYVQLSALEQQKTREKAQRLAVDHKMQKEKLHKRIAAL 409
Cdd:COG1196 326 AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370  410 ERQLDQKQELELEVQQLKSQLSVMRLVELDSGSEIVNKVETFLRDLSETEGELAHLNQFNQDLVVQERKSNDELQEARRA 489
Cdd:COG1196 406 EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEE 485


                .
gi 9294370  490 L 490
Cdd:COG1196 486 L 486
 
Name Accession Description Interval E-value
XH pfam03469
XH domain; The XH (rice gene X Homology) domain is found in a family of plant proteins ...
 504-634 5.63e-65

XH domain; The XH (rice gene X Homology) domain is found in a family of plant proteins including gene X. The molecular function of these proteins is unknown. However these proteins usually contain an XS domain that is also found in the PTGS protein SGS3. This domain contains a conserved glutamate residue that may be functionally important.


Pssm-ID: 460934 [Multi-domain]  Cd Length: 131  Bit Score: 209.75  E-value: 5.63e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370    504 KRMGELDTKPFMKAMRIKYCQEDLEDWAVEVIQLWEEYLKDPDWHPFKRIKLETAETivEVIDEDDEKLRTLKNELGDDA 583
Cdd:pfam03469   1 KRMGELDEKPFLNACKQKFSNEEAEVKAAELCSLWEEELKDPEWHPFKVVMVDGKHK--EVIDEDDEKLKELKEEYGEEV 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 9294370    584 YQAVANALLEINEYNPSGRYISSELWNFREDRKATLEEGVNSLLEQWNQAK 634
Cdd:pfam03469  79 YNAVTTALLELNEYNPSGRYPVPELWNFKEGRKATLKEGVDYILKQWKALK 129
RRM_like_XS cd12266
RNA recognition motif (RRM)-like XS domain found in plants; This XS (named after rice gene X ...
 120-227 4.00e-46

RNA recognition motif (RRM)-like XS domain found in plants; This XS (named after rice gene X and SGS3) domain is a single-stranded RNA-binding domain (RBD) and possesses a unique version of a RNA recognition motif (RRM) fold. It is conserved in a family of plant proteins including gene X and SGS3. Although its function is still unknown, the plant SGS3 proteins are thought to be involved in post-transcriptional gene silencing (PTGS) pathways. In addition, they contain a conserved aspartate residue that may be functionally important.


Pssm-ID: 409710  Cd Length: 107  Bit Score: 158.67  E-value: 4.00e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370  120 LVWPWKGVLVNIPTTsTEDGRSCTGESGPKLKDELIRrgFNPIRVRTVWDRFGHSGTGIVEFNRDWNGLQDALVFKKAYE 199
Cdd:cd12266   1 IVWPWMGIVVNTPTT-KDDNRKMEGGSNKELLERLIK--FGPTRVKPLWNPQGHTGTAIVKFNSDWNGFRNALRFEKAFE 77

                        90       100       110
                ....*....|....*....|....*....|
gi 9294370  200 GDGHGKKDW--LCGATDSSLYAWLANADDY 227
Cdd:cd12266  78 VDGHGKKDWrnKKGGRKSKLYGWLARADDY 107
XS pfam03468
XS domain; The XS (rice gene X and SGS3) domain is found in a family of plant proteins ...
 118-228 1.02e-44

XS domain; The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X and SGS3. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain has recently been predicted to possess an RRM-like RNA-binding domain by fold recognition.


Pssm-ID: 460933  Cd Length: 113  Bit Score: 155.02  E-value: 1.02e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370    118 EKLVWPWKGVLVNIPTTSTEDGRsCTGESGPKLKDELIRrgFNPIRVRTVWDRFGHSGTGIVEFNRDWNGLQDALVFKKA 197
Cdd:pfam03468   2 ELFVWPWMGIVVNIPTEQDEDGR-WVGMSGEELKDKLSR--FNPLKVKPLYGPQGHTGIAIVEFNKDWSGFKNAERFEKH 78

                          90       100       110
                  ....*....|....*....|....*....|....
gi 9294370    198 YEGDGHGKKDWL---CGATDSSLYAWLANADDYY 228
Cdd:pfam03468  79 FEAQGHGKKDWGgkrNRGSGSKLYGWVARADDYN 112
zf-XS pfam03470
XS zinc finger domain; This domain is a putative nucleic acid binding zinc finger found in ...
 32-75 4.61e-17

XS zinc finger domain; This domain is a putative nucleic acid binding zinc finger found in proteins that also contain an XS domain.


Pssm-ID: 251981  Cd Length: 43  Bit Score: 74.86  E-value: 4.61e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 9294370     32 CPYCPDNKKKVGLYVDILQHASGVGNSqSKKRSLTEKASHRALA 75
Cdd:pfam03470   1 CPFCPGKKKQDYKYKDLLQHASGVGAS-SNRRSAKEKASHRALA 43
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 250-490 7.58e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 58.79  E-value: 7.58e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370  250 AEEEARKDQKLLQRLNFMVENKQYRLKKLQIKYSQdsvkLKYETEEKEKILRAYSEDLTGRQQKStdhfnrifADHEKQK 329
Cdd:COG1196 258 LEAELAELEAELEELRLELEELELELEEAQAEEYE----LLAELARLEQDIARLEERRRELEERL--------EELEEEL 325

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370  330 VQLESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYVQLSALEQQKTREKAQRLAVDHKMQKEKLHKRIAAL 409
Cdd:COG1196 326 AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370  410 ERQLDQKQELELEVQQLKSQLSVMRLVELDSGSEIVNKVETFLRDLSETEGELAHLNQFNQDLVVQERKSNDELQEARRA 489
Cdd:COG1196 406 EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEE 485


                .
gi 9294370  490 L 490
Cdd:COG1196 486 L 486
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 268-467 1.61e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 48.13  E-value: 1.61e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370     268 VENKQYRLKKLQIKYSQDSVKLKYETEEKEKILRAYSEDLTGRQQKSTDHFNRIfADHEKQKVQLESQIKEL-------- 339
Cdd:TIGR02168  780 AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI-AATERRLEDLEEQIEELsediesla 858

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370     340 -EIRKLELAKREAENETQR--KIVAKELEQNAAINSYVQLSALEQQKTREKAQRLavdhKMQKEKLHKRIAALERQLdqk 416
Cdd:TIGR02168  859 aEIEELEELIEELESELEAllNERASLEEALALLRSELEELSEELRELESKRSEL----RRELEELREKLAQLELRL--- 931

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|.
gi 9294370     417 QELELEVQQLKSQLSVMRLVELDsgsEIVNKVETFLRDLSETEGELAHLNQ 467
Cdd:TIGR02168  932 EGLEVRIDNLQERLSEEYSLTLE---EAEALENKIEDDEEEARRRLKRLEN 979
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 233-529 9.68e-05

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 45.50  E-value: 9.68e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370    233 LGENLRKMGDLKSIyRFAEEEARKDQKLLQRLNFMVENKQYRLKKLQIKYSQ-DSVKLKYETEEKEKIL---RAYSEDLT 308
Cdd:pfam17380 245 LAEDVTTMTPEYTV-RYNGQTMTENEFLNQLLHIVQHQKAVSERQQQEKFEKmEQERLRQEKEEKAREVerrRKLEEAEK 323

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370    309 GRQqKSTDHFNRIFADHEKQKVQLEsqiKELEIRKLELAKREAENETQRKIvakeleqnaainsyvqlsALEQQKTREkA 388
Cdd:pfam17380 324 ARQ-AEMDRQAAIYAEQERMAMERE---RELERIRQEERKRELERIRQEEI------------------AMEISRMRE-L 380

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370    389 QRLAVDHKMQKEKLHKRIAALERQLDQKQELELEVQQLKSQLSVMRLVELDSGSEIVNKVET----FLRDLSETEGELAH 464
Cdd:pfam17380 381 ERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEerarEMERVRLEEQERQQ 460

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 9294370    465 -LNQFNQDLVVQERKSNDELQEAR-RALISNLRDMGLHigvKRMGELDTKPFMKAMRIKYCQEDLED 529
Cdd:pfam17380 461 qVERLRQQEEERKRKKLELEKEKRdRKRAEEQRRKILE---KELEERKQAMIEEERKRKLLEKEMEE 524
mukB PRK04863
chromosome partition protein MukB;
252-436 7.80e-04

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 42.64  E-value: 7.80e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370    252 EEARKDQKLLQ------------RLNFMVENKQYRLkklqIKYSQDSVKLKYETEEKEKILRAYSEDLTGRQQKSTDhFN 319
Cdd:PRK04863  945 QQAQQTQRDAKqqafaltevvqrRAHFSYEDAAEML----AKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQ-YN 1019

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370    320 RIFADHEKQKVQLESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYVQLSALEQQKTREKAQRlavdhkmqk 399
Cdd:PRK04863 1020 QVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEM--------- 1090

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 9294370    400 EKLHKRIAALERqlDQKQELELEVQQLKSQLSVMRLV 436
Cdd:PRK04863 1091 DNLTKKLRKLER--DYHEMREQVVNAKAGWCAVLRLV 1125
 
Name Accession Description Interval E-value
XH pfam03469
XH domain; The XH (rice gene X Homology) domain is found in a family of plant proteins ...
 504-634 5.63e-65

XH domain; The XH (rice gene X Homology) domain is found in a family of plant proteins including gene X. The molecular function of these proteins is unknown. However these proteins usually contain an XS domain that is also found in the PTGS protein SGS3. This domain contains a conserved glutamate residue that may be functionally important.


Pssm-ID: 460934 [Multi-domain]  Cd Length: 131  Bit Score: 209.75  E-value: 5.63e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370    504 KRMGELDTKPFMKAMRIKYCQEDLEDWAVEVIQLWEEYLKDPDWHPFKRIKLETAETivEVIDEDDEKLRTLKNELGDDA 583
Cdd:pfam03469   1 KRMGELDEKPFLNACKQKFSNEEAEVKAAELCSLWEEELKDPEWHPFKVVMVDGKHK--EVIDEDDEKLKELKEEYGEEV 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 9294370    584 YQAVANALLEINEYNPSGRYISSELWNFREDRKATLEEGVNSLLEQWNQAK 634
Cdd:pfam03469  79 YNAVTTALLELNEYNPSGRYPVPELWNFKEGRKATLKEGVDYILKQWKALK 129
RRM_like_XS cd12266
RNA recognition motif (RRM)-like XS domain found in plants; This XS (named after rice gene X ...
 120-227 4.00e-46

RNA recognition motif (RRM)-like XS domain found in plants; This XS (named after rice gene X and SGS3) domain is a single-stranded RNA-binding domain (RBD) and possesses a unique version of a RNA recognition motif (RRM) fold. It is conserved in a family of plant proteins including gene X and SGS3. Although its function is still unknown, the plant SGS3 proteins are thought to be involved in post-transcriptional gene silencing (PTGS) pathways. In addition, they contain a conserved aspartate residue that may be functionally important.


Pssm-ID: 409710  Cd Length: 107  Bit Score: 158.67  E-value: 4.00e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370  120 LVWPWKGVLVNIPTTsTEDGRSCTGESGPKLKDELIRrgFNPIRVRTVWDRFGHSGTGIVEFNRDWNGLQDALVFKKAYE 199
Cdd:cd12266   1 IVWPWMGIVVNTPTT-KDDNRKMEGGSNKELLERLIK--FGPTRVKPLWNPQGHTGTAIVKFNSDWNGFRNALRFEKAFE 77

                        90       100       110
                ....*....|....*....|....*....|
gi 9294370  200 GDGHGKKDW--LCGATDSSLYAWLANADDY 227
Cdd:cd12266  78 VDGHGKKDWrnKKGGRKSKLYGWLARADDY 107
XS pfam03468
XS domain; The XS (rice gene X and SGS3) domain is found in a family of plant proteins ...
 118-228 1.02e-44

XS domain; The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X and SGS3. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain has recently been predicted to possess an RRM-like RNA-binding domain by fold recognition.


Pssm-ID: 460933  Cd Length: 113  Bit Score: 155.02  E-value: 1.02e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370    118 EKLVWPWKGVLVNIPTTSTEDGRsCTGESGPKLKDELIRrgFNPIRVRTVWDRFGHSGTGIVEFNRDWNGLQDALVFKKA 197
Cdd:pfam03468   2 ELFVWPWMGIVVNIPTEQDEDGR-WVGMSGEELKDKLSR--FNPLKVKPLYGPQGHTGIAIVEFNKDWSGFKNAERFEKH 78

                          90       100       110
                  ....*....|....*....|....*....|....
gi 9294370    198 YEGDGHGKKDWL---CGATDSSLYAWLANADDYY 228
Cdd:pfam03468  79 FEAQGHGKKDWGgkrNRGSGSKLYGWVARADDYN 112
zf-XS pfam03470
XS zinc finger domain; This domain is a putative nucleic acid binding zinc finger found in ...
 32-75 4.61e-17

XS zinc finger domain; This domain is a putative nucleic acid binding zinc finger found in proteins that also contain an XS domain.


Pssm-ID: 251981  Cd Length: 43  Bit Score: 74.86  E-value: 4.61e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 9294370     32 CPYCPDNKKKVGLYVDILQHASGVGNSqSKKRSLTEKASHRALA 75
Cdd:pfam03470   1 CPFCPGKKKQDYKYKDLLQHASGVGAS-SNRRSAKEKASHRALA 43
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 250-490 7.58e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 58.79  E-value: 7.58e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370  250 AEEEARKDQKLLQRLNFMVENKQYRLKKLQIKYSQdsvkLKYETEEKEKILRAYSEDLTGRQQKStdhfnrifADHEKQK 329
Cdd:COG1196 258 LEAELAELEAELEELRLELEELELELEEAQAEEYE----LLAELARLEQDIARLEERRRELEERL--------EELEEEL 325

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370  330 VQLESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYVQLSALEQQKTREKAQRLAVDHKMQKEKLHKRIAAL 409
Cdd:COG1196 326 AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370  410 ERQLDQKQELELEVQQLKSQLSVMRLVELDSGSEIVNKVETFLRDLSETEGELAHLNQFNQDLVVQERKSNDELQEARRA 489
Cdd:COG1196 406 EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEE 485


                .
gi 9294370  490 L 490
Cdd:COG1196 486 L 486
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 247-496 8.33e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 58.79  E-value: 8.33e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370  247 YRFAEEEARKDQKLLQRLNFMVENKQYRLKKLQIKYSQDSVKLKYETEEKEKILRAYSEDLT--GRQQKSTDHFNRIFAD 324
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAelARLEQDIARLEERRRE 313

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370  325 HEKQKVQLESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYVQLSALEQQKTREKAQRLAVDHKMQKEKLHK 404
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR 393

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370  405 RIAALERQLDQKQELELEVQQLKSQLSVMRLVELDSGSEIVNKVETFLRDLSETEGELAHLNQFNQDLVVQERKSNDELQ 484
Cdd:COG1196 394 AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473

                       250
                ....*....|..
gi 9294370  485 EARRALISNLRD 496
Cdd:COG1196 474 LLEAALAELLEE 485
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 328-495 6.54e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 49.55  E-value: 6.54e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370  328 QKVQLESQIKELEIRKLELAKREAE-NETQRKIVAKELEQNAAINSYVQLSA-LEQQKTREKAQRLAVDHKMQKE-KLHK 404
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAElEELEAELEELEAELEELEAELAELEAeLEELRLELEELELELEEAQAEEyELLA 295

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370  405 RIAALERQLD----QKQELELEVQQLKSQLSVMRLVELDSGSEIVNKVETFLRDLSETEGELAHLNQFNQDLVVQERKSN 480
Cdd:COG1196 296 ELARLEQDIArleeRRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375

                       170
                ....*....|....*
gi 9294370  481 DELQEARRALISNLR 495
Cdd:COG1196 376 EAEEELEELAEELLE 390
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 268-467 1.61e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 48.13  E-value: 1.61e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370     268 VENKQYRLKKLQIKYSQDSVKLKYETEEKEKILRAYSEDLTGRQQKSTDHFNRIfADHEKQKVQLESQIKEL-------- 339
Cdd:TIGR02168  780 AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI-AATERRLEDLEEQIEELsediesla 858

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370     340 -EIRKLELAKREAENETQR--KIVAKELEQNAAINSYVQLSALEQQKTREKAQRLavdhKMQKEKLHKRIAALERQLdqk 416
Cdd:TIGR02168  859 aEIEELEELIEELESELEAllNERASLEEALALLRSELEELSEELRELESKRSEL----RRELEELREKLAQLELRL--- 931

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|.
gi 9294370     417 QELELEVQQLKSQLSVMRLVELDsgsEIVNKVETFLRDLSETEGELAHLNQ 467
Cdd:TIGR02168  932 EGLEVRIDNLQERLSEEYSLTLE---EAEALENKIEDDEEEARRRLKRLEN 979
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
324-496 1.97e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 47.99  E-value: 1.97e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370   324 DHEKQKVQLESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYV-----------QLSALEQQKTREKAQRLA 392
Cdd:COG4913  607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSwdeidvasaerEIAELEAELERLDASSDD 686

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370   393 VDH-KMQKEKLHKRIAALERQLDQKQ----ELELEVQQLKSQLSVMRLVELDSGSEIVNKVETFLRDLSETEGELAHLNQ 467
Cdd:COG4913  687 LAAlEEQLEELEAELEELEEELDELKgeigRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERE 766

                        170       180
                 ....*....|....*....|....*....
gi 9294370   468 FNQDLVVQERKSNDELQEARRALISNLRD 496
Cdd:COG4913  767 LRENLEERIDALRARLNRAEEELERAMRA 795
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 323-498 3.25e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 47.36  E-value: 3.25e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370     323 ADHEKQKVQLESQIKELEIRKLELAKREAENETQRKIVAKELEQ-----NAAINSYVQLSALEQQKTREKAQ------RL 391
Cdd:TIGR02168  680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEElsrqiSALRKDLARLEAEVEQLEERIAQlskeltEL 759

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370     392 AVDHKMQKEKLHKRIAALERQLDQKQELELEVQQLKSQLSVMRLvELDSGSEIVNKVETFLRDLSETEGELAHLNQFNQD 471
Cdd:TIGR02168  760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE-ALDELRAELTLLNEEAANLRERLESLERRIAATER 838

                          170       180
                   ....*....|....*....|....*..
gi 9294370     472 LVVQERKSNDELQEARRALISNLRDMG 498
Cdd:TIGR02168  839 RLEDLEEQIEELSEDIESLAAEIEELE 865
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 261-579 3.88e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 46.97  E-value: 3.88e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370     261 LQRLNFMVE--NKQYRLKKLQIKYSQDSVKLKYETEEKEKILraysedltgrqqkSTDHFNrifaDHEKQKVQLESQIKE 338
Cdd:TIGR02168  188 LDRLEDILNelERQLKSLERQAEKAERYKELKAELRELELAL-------------LVLRLE----ELREELEELQEELKE 250

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370     339 LEIRKLELAKREAENETQrkivakeLEQNAAINSYVQLSALEQQKTREKAQRLAVDHKMQKEKLHKRIAALERQLdqkQE 418
Cdd:TIGR02168  251 AEEELEELTAELQELEEK-------LEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQL---EE 320

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370     419 LELEVQQLKSQlsvmRLVELDSGSEIVNKVETFLRDLSETEGELAHLNQFNQDLVVQERKSNDELQEARRALISNLRDMG 498
Cdd:TIGR02168  321 LEAQLEELESK----LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA 396

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370     499 LHigVKRMGELDTKpfmkamrikycQEDLEDWAVEVIQLWEEYLKDPDWHPFKRIKLETAETIvEVIDEDDEKLRTLKNE 578
Cdd:TIGR02168  397 SL--NNEIERLEAR-----------LERLEDRRERLQQEIEELLKKLEEAELKELQAELEELE-EELEELQEELERLEEA 462


                   .
gi 9294370     579 L 579
Cdd:TIGR02168  463 L 463
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
288-455 6.30e-05

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 46.16  E-value: 6.30e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370  288 KLKYETEEKEKILRAYsedltgRQQkstdhfNRIFaDHEKQKVQLESQIKELEIRKLELAKREAENETQRKIVAKELEQN 367
Cdd:COG3206 186 ELRKELEEAEAALEEF------RQK------NGLV-DLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSG 252

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370  368 AAINSYV-----------QLSALEQQKTrEKAQRLAVDH-KMQkeKLHKRIAALERQLDQ-----KQELELEVQQLKSQL 430
Cdd:COG3206 253 PDALPELlqspviqqlraQLAELEAELA-ELSARYTPNHpDVI--ALRAQIAALRAQLQQeaqriLASLEAELEALQARE 329

                       170       180
                ....*....|....*....|....*..
gi 9294370  431 SVMR--LVELDSGSEIVNKVETFLRDL 455
Cdd:COG3206 330 ASLQaqLAQLEARLAELPELEAELRRL 356
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 233-529 9.68e-05

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 45.50  E-value: 9.68e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370    233 LGENLRKMGDLKSIyRFAEEEARKDQKLLQRLNFMVENKQYRLKKLQIKYSQ-DSVKLKYETEEKEKIL---RAYSEDLT 308
Cdd:pfam17380 245 LAEDVTTMTPEYTV-RYNGQTMTENEFLNQLLHIVQHQKAVSERQQQEKFEKmEQERLRQEKEEKAREVerrRKLEEAEK 323

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370    309 GRQqKSTDHFNRIFADHEKQKVQLEsqiKELEIRKLELAKREAENETQRKIvakeleqnaainsyvqlsALEQQKTREkA 388
Cdd:pfam17380 324 ARQ-AEMDRQAAIYAEQERMAMERE---RELERIRQEERKRELERIRQEEI------------------AMEISRMRE-L 380

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370    389 QRLAVDHKMQKEKLHKRIAALERQLDQKQELELEVQQLKSQLSVMRLVELDSGSEIVNKVET----FLRDLSETEGELAH 464
Cdd:pfam17380 381 ERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEerarEMERVRLEEQERQQ 460

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 9294370    465 -LNQFNQDLVVQERKSNDELQEAR-RALISNLRDMGLHigvKRMGELDTKPFMKAMRIKYCQEDLED 529
Cdd:pfam17380 461 qVERLRQQEEERKRKKLELEKEKRdRKRAEEQRRKILE---KELEERKQAMIEEERKRKLLEKEMEE 524
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 269-490 1.13e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 44.75  E-value: 1.13e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370  269 ENKQYRLKKLQIKYSQDSVKLKYETEEKEKILRAYSEdltgrQQKSTDHFNRIFADHEKQKVQLESQIKELEIRKLELAK 348
Cdd:COG4942  23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAA-----LERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370  349 REAEnetQRKIVAKELEQNAAINSYVQLSALEQQKTREKAQRLAVDHKMQKEKLHKRIAALERQLDQKQELELEVQQLKS 428
Cdd:COG4942  98 ELEA---QKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 9294370  429 QLSVMRLVELDSGSEIVNKVETFLRDLSETEGELAHLNQFNQDLVVQERKSNDELQEARRAL 490
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
297-490 6.36e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 42.83  E-value: 6.36e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370  297 EKILRAYSEDLTGRQQKSTDHFNRIFADHEKQKVQLESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYVQL 376
Cdd:COG4717  48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370  377 SALEQQKTREKAQRLAVDHKMqkEKLHKRIAALERQLDQKQELELEVQQLKSQLsvmRLVELDSGSEIVNKVETFLRDLS 456
Cdd:COG4717 128 LPLYQELEALEAELAELPERL--EELEERLEELRELEEELEELEAELAELQEEL---EELLEQLSLATEEELQDLAEELE 202

                       170       180       190
                ....*....|....*....|....*....|....
gi 9294370  457 ETEGELAHLNQfnqdlvvQERKSNDELQEARRAL 490
Cdd:COG4717 203 ELQQRLAELEE-------ELEEAQEELEELEEEL 229
mukB PRK04863
chromosome partition protein MukB;
252-436 7.80e-04

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 42.64  E-value: 7.80e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370    252 EEARKDQKLLQ------------RLNFMVENKQYRLkklqIKYSQDSVKLKYETEEKEKILRAYSEDLTGRQQKSTDhFN 319
Cdd:PRK04863  945 QQAQQTQRDAKqqafaltevvqrRAHFSYEDAAEML----AKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQ-YN 1019

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370    320 RIFADHEKQKVQLESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYVQLSALEQQKTREKAQRlavdhkmqk 399
Cdd:PRK04863 1020 QVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEM--------- 1090

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 9294370    400 EKLHKRIAALERqlDQKQELELEVQQLKSQLSVMRLV 436
Cdd:PRK04863 1091 DNLTKKLRKLER--DYHEMREQVVNAKAGWCAVLRLV 1125
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 235-425 8.91e-04

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 42.42  E-value: 8.91e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370    235 ENLRKMGDLKSIYRFAEEEARKDQKLLQRLNFMVENKQYRLKKLQIKYSQDSVKLKYETEEKEKILRAYSEDLTgRQQKS 314
Cdd:pfam17380 392 ERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERL-RQQEE 470

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370    315 TDHFNRIFADHEKQKVQLESQIKELEIRKLELAKREA--ENETQRKIVAKELE--QNAAINSYVQLSALEQQKT-REKAQ 389
Cdd:pfam17380 471 ERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAmiEEERKRKLLEKEMEerQKAIYEEERRREAEEERRKqQEMEE 550

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 9294370    390 RLAVDHKMQKEKLHK-RIAALERQLDQ-KQELELEVQQ 425
Cdd:pfam17380 551 RRRIQEQMRKATEERsRLEAMEREREMmRQIVESEKAR 588
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
 250-496 1.29e-03

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 41.96  E-value: 1.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370    250 AEEEARKDQKLLQrlNFMVENKQYRLKKLQIKYSQDSVKLKYETEEKE-KILRAYSE--DLTGRQQKSTDHFNRIfADHE 326
Cdd:PRK10929   63 SLERAKQYQQVID--NFPKLSAELRQQLNNERDEPRSVPPNMSTDALEqEILQVSSQllEKSRQAQQEQDRAREI-SDSL 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370    327 KQKVQLESQIK----ELEIR------------KLELAKREAENeTQRKIVAKELEqnaainsYVQLSAleqqKTREKAQR 390
Cdd:PRK10929  140 SQLPQQQTEARrqlnEIERRlqtlgtpntplaQAQLTALQAES-AALKALVDELE-------LAQLSA----NNRQELAR 207

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370    391 LAVDhkmqkekLHKRiaalerqldQKQELELEVQQLKSQLSVMRLVELDSGSEIVNKVE-------TFLRDLSETEGEL- 462
Cdd:PRK10929  208 LRSE-------LAKK---------RSQQLDAYLQALRNQLNSQRQREAERALESTELLAeqsgdlpKSIVAQFKINRELs 271

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 9294370    463 AHLNQFNQ--DLVV-QERKSNDELQEARRALiSNLRD 496
Cdd:PRK10929  272 QALNQQAQrmDLIAsQQRQAASQTLQVRQAL-NTLRE 307
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 229-488 1.50e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 41.65  E-value: 1.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370    229 RANILGENLR-KMGDLKSIYRFAEEEARKDQKLLQRLNFMVENKQYR-LKKLQIKYSQDSVKLKYETE--EKEKILRAYs 304
Cdd:pfam17380 332 QAAIYAEQERmAMERERELERIRQEERKRELERIRQEEIAMEISRMReLERLQMERQQKNERVRQELEaaRKVKILEEE- 410

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370    305 edltgRQQKSTDHFNrifadhEKQKVQLESQ-IKELEIRKLElAKREAENETQRKivaKELEQNAainsyvQLSALEQQK 383
Cdd:pfam17380 411 -----RQRKIQQQKV------EMEQIRAEQEeARQREVRRLE-EERAREMERVRL---EEQERQQ------QVERLRQQE 469

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370    384 TREKAQRLavdhKMQKEKLHKRIAALERQLDQKQELELEVQQLKSQLSVMRLVEldsgseivnkvetflRDLSETEGELA 463
Cdd:pfam17380 470 EERKRKKL----ELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLE---------------KEMEERQKAIY 530

                         250       260
                  ....*....|....*....|....*
gi 9294370    464 HLNQfnQDLVVQERKSNDELQEARR 488
Cdd:pfam17380 531 EEER--RREAEEERRKQQEMEERRR 553
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 239-425 1.82e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 40.97  E-value: 1.82e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370  239 KMGDLKSIYRFAEEEARKDQKLLQRLNFMVENKQYRLKKLQikysQDSVKLKYETEEKEKILRAYSEDLTGR---QQKS- 314
Cdd:COG3883  24 ELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQ----AEIDKLQAEIAEAEAEIEERREELGERaraLYRSg 99

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370  315 ----------------------------TDHFNRIFADHEKQKVQLESQIKELEIRKLELAKREAENETQRKIVAKELEQ 366
Cdd:COG3883 100 gsvsyldvllgsesfsdfldrlsalskiADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAE 179

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 9294370  367 NAAInsYVQLSALEQQKTREKAQRLAvdhkmQKEKLHKRIAALERQLDQKQELELEVQQ 425
Cdd:COG3883 180 QEAL--LAQLSAEEAAAEAQLAELEA-----ELAAAEAAAAAAAAAAAAAAAAAAAAAA 231
COG5022 COG5022
Myosin heavy chain [General function prediction only];
254-513 3.15e-03

Myosin heavy chain [General function prediction only];


Pssm-ID: 227355 [Multi-domain]  Cd Length: 1463  Bit Score: 40.83  E-value: 3.15e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370   254 ARKDQKLLQRLnfMVENKQYRLKKLQIKYSQDsVKLK--YETEEKEKILRAYSEDLTGRQQKStdhfnrifadhEKQKVQ 331
Cdd:COG5022  767 ALKRIKKIQVI--QHGFRLRRLVDYELKWRLF-IKLQplLSLLGSRKEYRSYLACIIKLQKTI-----------KREKKL 832

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370   332 LESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYVQLSALEQQKTREKAQRLAVDH-KMQKEKLHKRIAALE 410
Cdd:COG5022  833 RETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISSlKLVNLELESEIIELK 912

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370   411 RQLDQ--------KQELELEVQQL--KSQLSVMRLVELDSgSEIVNKVETFLRDLSETEGELAHLNQFNQDLVVQERKSN 480
Cdd:COG5022  913 KSLSSdlienlefKTELIARLKKLlnNIDLEEGPSIEYVK-LPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKAN 991

                        250       260       270
                 ....*....|....*....|....*....|....
gi 9294370   481 DELQEARRALISNLRD-MGLHIGVKRMGELDTKP 513
Cdd:COG5022  992 SELKNFKKELAELSKQyGALQESTKQLKELPVEV 1025
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
225-429 3.42e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 40.67  E-value: 3.42e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370   225 DDYYRANIL-----GENLRKM----GDLKSIYRfAEEEARKDQKLLQRLNFMVEN-KQYRLKKLQIKYSQDSVKLkYETE 294
Cdd:COG4913  210 DDFVREYMLeepdtFEAADALvehfDDLERAHE-ALEDAREQIELLEPIRELAERyAAARERLAELEYLRAALRL-WFAQ 287

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370   295 EKEKILRAYSEDLTGRQQKSTDHFNRI---FADHEKQKVQLESQIKELEIRKLELAKRE-AENETQRKIVAKELEQN--- 367
Cdd:COG4913  288 RRLELLEAELEELRAELARLEAELERLearLDALREELDELEAQIRGNGGDRLEQLEREiERLERELEERERRRARLeal 367

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 9294370   368 -AAINSYVQLSALEQQKTREKAQRLAVDHKMQKEKLHKRIAALERQL----DQKQELELEVQQLKSQ 429
Cdd:COG4913  368 lAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALrdlrRELRELEAEIASLERR 434
PTZ00491 PTZ00491
major vault protein; Provisional
 328-449 3.52e-03

major vault protein; Provisional


Pssm-ID: 240439 [Multi-domain]  Cd Length: 850  Bit Score: 40.39  E-value: 3.52e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370   328 QKVQLESQIK-ELEIRKLelaKREAENETQRKIVAKELEQNAAINSyvQLSALEQQKTREKAQRLAVDHKMQKEKLhkRI 406
Cdd:PTZ00491 671 QAELLEQEARgRLERQKM---HDKAKAEEQRTKLLELQAESAAVES--SGQSRAEALAEAEARLIEAEAEVEQAEL--RA 743

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 9294370   407 AALE-------RQLDQKQELELEVQQLKSQLSVMRLVELdsgSEI-VNKVE 449
Cdd:PTZ00491 744 KALRieaeaelEKLRKRQELELEYEQAQNELEIAKAKEL---ADIeATKFE 791
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
297-454 5.62e-03

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 441980 [Multi-domain]  Cd Length: 644  Bit Score: 39.84  E-value: 5.62e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370  297 EKILRAYSEDLTGRQQKSTDHFNRIFADHEKQKVQLESQIKELEIRKLELakrEAENETQRKIVAkELEQnaainsyvQL 376
Cdd:COG2433 383 EELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEEL---EAELEEKDERIE-RLER--------EL 450

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370  377 SaLEQQKTREKAQRlavDHKMQkeKLHKRIAALERQLDQKQElelEVQQLKSQLSVMR-LVELDSGSE--IVNKVETFLR 453
Cdd:COG2433 451 S-EARSEERREIRK---DREIS--RLDREIERLERELEEERE---RIEELKRKLERLKeLWKLEHSGElvPVKVVEKFTK 521


                .
gi 9294370  454 D 454
Cdd:COG2433 522 E 522
PTZ00121 PTZ00121
MAEBL; Provisional
 230-413 6.61e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 39.74  E-value: 6.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370    230 ANILGENLRKMGDLK----SIYRFAEEEARKDQKLLQrlnfmvENKQYRLKKLQIKYSQDSVKLKYETEEKEKILRAYSE 305
Cdd:PTZ00121 1618 AKIKAEELKKAEEEKkkveQLKKKEAEEKKKAEELKK------AEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAA 1691

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370    306 DLTGRQQKSTDHFNRIFADHEKQKVQLESQIKELEIR--KLELAKREAENETQRKIVAKELEQNAaiNSYVQLSALEQQK 383
Cdd:PTZ00121 1692 EALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENkiKAEEAKKEAEEDKKKAEEAKKDEEEK--KKIAHLKKEEEKK 1769

                         170       180       190
                  ....*....|....*....|....*....|.
gi 9294370    384 TRE-KAQRLAVDHKMQKEKLHKRIAALERQL 413
Cdd:PTZ00121 1770 AEEiRKEKEAVIEEELDEEDEKRRMEVDKKI 1800
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 233-420 7.38e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 38.98  E-value: 7.38e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370  233 LGENLRKMGDLKSIYRFAEEEARKDQKLLQRLNFMVENKQYRLKKLQIKYSQDSVKLKYETEEKEKILRAYSedLTGRQ- 311
Cdd:COG4942  43 LAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALY--RLGRQp 120

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9294370  312 -------QKSTDHFNRIFADHEKQKVQLESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYVQLSALEQQKT 384
Cdd:COG4942 121 plalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKL 200

                       170       180       190
                ....*....|....*....|....*....|....*.
gi 9294370  385 REKAQRLAVDHKMQKEKLHKRIAALERQLDQKQELE 420
Cdd:COG4942 201 LARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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