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Conserved domains on  [gi|12843858|dbj|BAB26140|]
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unnamed protein product [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
HAD-SF-IIA-hyp3 super family cl31447
HAD-superfamily subfamily IIA hydrolase, TIGR01458; This hypothetical equivalog is a member of ...
11-267 1.32e-150

HAD-superfamily subfamily IIA hydrolase, TIGR01458; This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published. [Unknown function, Enzymes of unknown specificity]


The actual alignment was detected with superfamily member TIGR01458:

Pssm-ID: 162372 [Multi-domain]  Cd Length: 257  Bit Score: 420.81  E-value: 1.32e-150
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858    11 VRGVLLDISGVLCDSSASGATAIAGSVEAVARLKQSPLKVRFCTNESQKSLRELVGVLQQLGFDISEEEVTAPAPATCQI 90
Cdd:TIGR01458   1 VKGVLLDISGVLYISDAGGGTAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFTPAPAARQL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858    91 LKERGLRPHLLIHEGVRSEFDDIDMSNPNCVVIADAGEAFSYQNMNRAFQVLMELENPVLISLGKGRYYKETSGLMLDVG 170
Cdd:TIGR01458  81 LEEKQLRPMLLVDDRVLPDFDGIDTSDPNCVVMGLAPEHFSYQILNQAFRLLLDGAKPVLIAIGKGRYYKRKDGLALDVG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858   171 GYMKALEYACGIKAEVVGKPSPEFFKSALQAIGVEAHQAIMIGDDIVGDVGGAQQCGMRALQVRTGKFRPGDEHHPEVQA 250
Cdd:TIGR01458 161 PFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEAVMIGDDCRDDVGGAQDCGMRGIQVRTGKYRPSDEEKINVPP 240
                         250
                  ....*....|....*..
gi 12843858   251 DGYVDNLAEAVDLLLKY 267
Cdd:TIGR01458 241 DLTCDSLPHAVDLILQH 257
 
Name Accession Description Interval E-value
HAD-SF-IIA-hyp3 TIGR01458
HAD-superfamily subfamily IIA hydrolase, TIGR01458; This hypothetical equivalog is a member of ...
11-267 1.32e-150

HAD-superfamily subfamily IIA hydrolase, TIGR01458; This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 162372 [Multi-domain]  Cd Length: 257  Bit Score: 420.81  E-value: 1.32e-150
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858    11 VRGVLLDISGVLCDSSASGATAIAGSVEAVARLKQSPLKVRFCTNESQKSLRELVGVLQQLGFDISEEEVTAPAPATCQI 90
Cdd:TIGR01458   1 VKGVLLDISGVLYISDAGGGTAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFTPAPAARQL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858    91 LKERGLRPHLLIHEGVRSEFDDIDMSNPNCVVIADAGEAFSYQNMNRAFQVLMELENPVLISLGKGRYYKETSGLMLDVG 170
Cdd:TIGR01458  81 LEEKQLRPMLLVDDRVLPDFDGIDTSDPNCVVMGLAPEHFSYQILNQAFRLLLDGAKPVLIAIGKGRYYKRKDGLALDVG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858   171 GYMKALEYACGIKAEVVGKPSPEFFKSALQAIGVEAHQAIMIGDDIVGDVGGAQQCGMRALQVRTGKFRPGDEHHPEVQA 250
Cdd:TIGR01458 161 PFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEAVMIGDDCRDDVGGAQDCGMRGIQVRTGKYRPSDEEKINVPP 240
                         250
                  ....*....|....*..
gi 12843858   251 DGYVDNLAEAVDLLLKY 267
Cdd:TIGR01458 241 DLTCDSLPHAVDLILQH 257
HAD_PPase cd07509
inorganic pyrophosphatase similar to a human phospholysine phosphohistidine inorganic ...
12-265 4.28e-139

inorganic pyrophosphatase similar to a human phospholysine phosphohistidine inorganic pyrophosphate phosphatase (LHPP); LHPP hydrolyzes nitrogen-phosphorus bonds in phospholysine, phosphohistidine and imidodiphosphate as well as oxygen-phosphorus bonds in inorganic pyrophosphate in vitro. This family also includes human haloacid dehalogenase like hydrolase domain containing 2 protine (HDHD2) a phosphatase which may be involved in polygenic hypertension. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319812 [Multi-domain]  Cd Length: 248  Bit Score: 391.26  E-value: 4.28e-139
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858  12 RGVLLDISGVLCDSSasgaTAIAGSVEAVARLKQSPLKVRFCTNESQKSLRELVGVLQQLGFDISEEEVTAPAPATCQIL 91
Cdd:cd07509   1 KAVLLDLSGTLYISG----AAIPGAAEALKRLRHAGLKVRFLTNTTKESRRTLAERLQRLGFDVSEEEIFTSLTAARQYL 76
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858  92 KERGLRPHLLIHEGVRSEFDDIDMSNPNCVVIADAGEAFSYQNMNRAFQVLmeLENPVLISLGKGRYYKETSGLMLDVGG 171
Cdd:cd07509  77 EEKGLRPHLLVDDDALEDFIGIDTSDPNAVVIGDAGEHFNYQTLNRAFRLL--LDGAPLIALHKGRYYKRKDGLALDPGA 154
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858 172 YMKALEYACGIKAEVVGKPSPEFFKSALQAIGVEAHQAIMIGDDIVGDVGGAQQCGMRALQVRTGKFRPGDEHHPEVQAD 251
Cdd:cd07509 155 FVTGLEYATGIKATVVGKPSPEFFLSALRSLGVDPEEAVMIGDDLRDDVGGAQACGMRGILVRTGKYRPSDEKKPNVPPD 234
                       250
                ....*....|....
gi 12843858 252 GYVDNLAEAVDLLL 265
Cdd:cd07509 235 LTADSFADAVDHIL 248
NagD COG0647
Ribonucleotide monophosphatase NagD, HAD superfamily [Nucleotide transport and metabolism];
5-259 1.61e-63

Ribonucleotide monophosphatase NagD, HAD superfamily [Nucleotide transport and metabolism];


Pssm-ID: 440412 [Multi-domain]  Cd Length: 259  Bit Score: 199.56  E-value: 1.61e-63
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858   5 AERLTGVRGVLLDISGVLCDssasGATAIAGSVEAVARLKQSPLKVRFCTNESQKSLRELVGVLQQLGFDISEEEVTAPA 84
Cdd:COG0647   2 SELADRYDAFLLDLDGVLYR----GDEPIPGAVEALARLRAAGKPVLFLTNNSSRTPEDVAEKLRRLGIPVAEDEIVTSG 77
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858  85 PATCQILKER--GLRPHLLIHEGVRSEFDDIDMS-----NPNCVVIADaGEAFSYQNMNRAFQVLMEleNPVLISLGKGR 157
Cdd:COG0647  78 DATAAYLAERhpGARVYVIGEEGLREELEEAGLTlvddeEPDAVVVGL-DRTFTYEKLAEALRAIRR--GAPFIATNPDR 154
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858 158 YYKETSGLMLDVGGYMKALEYACGIKAEVVGKPSPEFFKSALQAIGVEAHQAIMIGDDIVGDVGGAQQCGMRALQVRTGK 237
Cdd:COG0647 155 TVPTEDGLIPGAGALAAALEAATGGEPLVVGKPSPPIYELALERLGVDPERVLMVGDRLDTDILGANAAGLDTLLVLTGV 234
                       250       260
                ....*....|....*....|..
gi 12843858 238 FRPGDEHHPEVQADGYVDNLAE 259
Cdd:COG0647 235 TTAEDLEAAPIRPDYVLDSLAE 256
Hydrolase_like pfam13242
HAD-hyrolase-like;
186-260 4.78e-22

HAD-hyrolase-like;


Pssm-ID: 433056 [Multi-domain]  Cd Length: 75  Bit Score: 86.90  E-value: 4.78e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 12843858   186 VVGKPSPEFFKSALQAIGVEAHQAIMIGDDIVGDVGGAQQCGMRALQVRTGKFRPGDEHHPEVQADGYVDNLAEA 260
Cdd:pfam13242   1 VCGKPNPGMLERALARLGLDPERTVMIGDRLDTDILGAREAGARTILVLTGVTRPADLEKAPIRPDYVVDDLAEA 75
PRK10444 PRK10444
HAD-IIA family hydrolase;
11-236 9.69e-11

HAD-IIA family hydrolase;


Pssm-ID: 182466 [Multi-domain]  Cd Length: 248  Bit Score: 60.58  E-value: 9.69e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858   11 VRGVLLDISGVLCDSSasgaTAIAGSVEAVARLKQSPLKVRFCTNESQKSLRELVGVLQQLGFDISEEEVTAPAPATCQI 90
Cdd:PRK10444   1 IKNVICDIDGVLMHDN----VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTSAMATADF 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858   91 LK-ERGLRPHL-----LIHEGVRSEFDDIDMsNPNCVVIADAgEAFSYQNMNRAFQVLME-----LENPvlislgkgryy 159
Cdd:PRK10444  77 LRrQEGKKAYVigegaLIHELYKAGFTITDI-NPDFVIVGET-RSYNWDMMHKAAYFVANgarfiATNP----------- 143
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 12843858  160 kETSGLMLD--VGGYMKALEYACGIKAEVVGKPSPEFFKSALQAIGVEAHQAIMIGDDIVGDVGGAQQCGMRALQVRTG 236
Cdd:PRK10444 144 -DTHGRGFYpaCGALCAGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSG 221
 
Name Accession Description Interval E-value
HAD-SF-IIA-hyp3 TIGR01458
HAD-superfamily subfamily IIA hydrolase, TIGR01458; This hypothetical equivalog is a member of ...
11-267 1.32e-150

HAD-superfamily subfamily IIA hydrolase, TIGR01458; This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 162372 [Multi-domain]  Cd Length: 257  Bit Score: 420.81  E-value: 1.32e-150
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858    11 VRGVLLDISGVLCDSSASGATAIAGSVEAVARLKQSPLKVRFCTNESQKSLRELVGVLQQLGFDISEEEVTAPAPATCQI 90
Cdd:TIGR01458   1 VKGVLLDISGVLYISDAGGGTAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFTPAPAARQL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858    91 LKERGLRPHLLIHEGVRSEFDDIDMSNPNCVVIADAGEAFSYQNMNRAFQVLMELENPVLISLGKGRYYKETSGLMLDVG 170
Cdd:TIGR01458  81 LEEKQLRPMLLVDDRVLPDFDGIDTSDPNCVVMGLAPEHFSYQILNQAFRLLLDGAKPVLIAIGKGRYYKRKDGLALDVG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858   171 GYMKALEYACGIKAEVVGKPSPEFFKSALQAIGVEAHQAIMIGDDIVGDVGGAQQCGMRALQVRTGKFRPGDEHHPEVQA 250
Cdd:TIGR01458 161 PFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEAVMIGDDCRDDVGGAQDCGMRGIQVRTGKYRPSDEEKINVPP 240
                         250
                  ....*....|....*..
gi 12843858   251 DGYVDNLAEAVDLLLKY 267
Cdd:TIGR01458 241 DLTCDSLPHAVDLILQH 257
HAD_PPase cd07509
inorganic pyrophosphatase similar to a human phospholysine phosphohistidine inorganic ...
12-265 4.28e-139

inorganic pyrophosphatase similar to a human phospholysine phosphohistidine inorganic pyrophosphate phosphatase (LHPP); LHPP hydrolyzes nitrogen-phosphorus bonds in phospholysine, phosphohistidine and imidodiphosphate as well as oxygen-phosphorus bonds in inorganic pyrophosphate in vitro. This family also includes human haloacid dehalogenase like hydrolase domain containing 2 protine (HDHD2) a phosphatase which may be involved in polygenic hypertension. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319812 [Multi-domain]  Cd Length: 248  Bit Score: 391.26  E-value: 4.28e-139
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858  12 RGVLLDISGVLCDSSasgaTAIAGSVEAVARLKQSPLKVRFCTNESQKSLRELVGVLQQLGFDISEEEVTAPAPATCQIL 91
Cdd:cd07509   1 KAVLLDLSGTLYISG----AAIPGAAEALKRLRHAGLKVRFLTNTTKESRRTLAERLQRLGFDVSEEEIFTSLTAARQYL 76
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858  92 KERGLRPHLLIHEGVRSEFDDIDMSNPNCVVIADAGEAFSYQNMNRAFQVLmeLENPVLISLGKGRYYKETSGLMLDVGG 171
Cdd:cd07509  77 EEKGLRPHLLVDDDALEDFIGIDTSDPNAVVIGDAGEHFNYQTLNRAFRLL--LDGAPLIALHKGRYYKRKDGLALDPGA 154
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858 172 YMKALEYACGIKAEVVGKPSPEFFKSALQAIGVEAHQAIMIGDDIVGDVGGAQQCGMRALQVRTGKFRPGDEHHPEVQAD 251
Cdd:cd07509 155 FVTGLEYATGIKATVVGKPSPEFFLSALRSLGVDPEEAVMIGDDLRDDVGGAQACGMRGILVRTGKYRPSDEKKPNVPPD 234
                       250
                ....*....|....
gi 12843858 252 GYVDNLAEAVDLLL 265
Cdd:cd07509 235 LTADSFADAVDHIL 248
NagD COG0647
Ribonucleotide monophosphatase NagD, HAD superfamily [Nucleotide transport and metabolism];
5-259 1.61e-63

Ribonucleotide monophosphatase NagD, HAD superfamily [Nucleotide transport and metabolism];


Pssm-ID: 440412 [Multi-domain]  Cd Length: 259  Bit Score: 199.56  E-value: 1.61e-63
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858   5 AERLTGVRGVLLDISGVLCDssasGATAIAGSVEAVARLKQSPLKVRFCTNESQKSLRELVGVLQQLGFDISEEEVTAPA 84
Cdd:COG0647   2 SELADRYDAFLLDLDGVLYR----GDEPIPGAVEALARLRAAGKPVLFLTNNSSRTPEDVAEKLRRLGIPVAEDEIVTSG 77
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858  85 PATCQILKER--GLRPHLLIHEGVRSEFDDIDMS-----NPNCVVIADaGEAFSYQNMNRAFQVLMEleNPVLISLGKGR 157
Cdd:COG0647  78 DATAAYLAERhpGARVYVIGEEGLREELEEAGLTlvddeEPDAVVVGL-DRTFTYEKLAEALRAIRR--GAPFIATNPDR 154
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858 158 YYKETSGLMLDVGGYMKALEYACGIKAEVVGKPSPEFFKSALQAIGVEAHQAIMIGDDIVGDVGGAQQCGMRALQVRTGK 237
Cdd:COG0647 155 TVPTEDGLIPGAGALAAALEAATGGEPLVVGKPSPPIYELALERLGVDPERVLMVGDRLDTDILGANAAGLDTLLVLTGV 234
                       250       260
                ....*....|....*....|..
gi 12843858 238 FRPGDEHHPEVQADGYVDNLAE 259
Cdd:COG0647 235 TTAEDLEAAPIRPDYVLDSLAE 256
HAD-SF-IIA TIGR01460
Haloacid Dehalogenase Superfamily Class (subfamily) IIA; This model represents one structural ...
14-236 3.35e-33

Haloacid Dehalogenase Superfamily Class (subfamily) IIA; This model represents one structural subclass of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs. The classes are defined based on the location and the observed or predicted fold of a so-called "capping domain", or the absence of such a domain. Class I consists of sequences in which the capping domain is found in between the first and second catalytic motifs. Class II consists of sequences in which the capping domain is found between the second and third motifs. Class III sequences have no capping domain in iether of these positions. The Class IIA capping domain is predicted by PSI-PRED to consist of a mixed alpha-beta fold with the basic pattern: Helix-Helix-Helix-Sheet-Helix-Loop-Sheet-Helix-Sheet-Helix. Presently, this subfamily encompasses a single equivalog model (TIGR01452) for the eukaryotic phosphoglycolate phosphatase, as well as four hypothetical equivalogs covering closely related sequences (TIGR01456 and TIGR01458 in eukaryotes, TIGR01457 in gram positive bacteria and TIGR01459 in gram negative bacteria). The Escherishia coli NagD gene and the Bacillus subtilus AraL gene are members of this subfamily but are not members of the any of the presently defined equivalogs within it. NagD is part of the NAG operon responsible for N-acetylglucosamine metabolism. The function of this gene is unknown. Genes from several organisms have been annotated as NagD, or NagD-like. However, without data on the presence of other members of this pathway, (such as in the case of Yersinia pestis) these assignments should not be given great weight. The AraL gene is similar: it is part of the L-arabinose operon, but the function is unknown. A gene from Halobacterium has been annotated as AraL, but no other Ara operon genes have been annotated. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 273637 [Multi-domain]  Cd Length: 236  Bit Score: 120.89  E-value: 3.35e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858    14 VLLDISGVLCDssasGATAIAGSVEAVARLKQSPLKVRFCTNESQKSLRELVGVLQQL-GFDISEEEVTAPAPATCQILK 92
Cdd:TIGR01460   1 FLFDIDGVLWL----GHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLlGVDVSPDQIITSGSVTKDLLR 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858    93 ER--GLRPHLLIHEGVRSE----------FDDIDMSNPN---CVVIADAGEAFSYQNMNRAFQVLMELENPVLIS----- 152
Cdd:TIGR01460  77 QRfeGEKVYVIGVGELRESleglgfrndfFDDIDHLAIEkipAAVIVGEPSDFSYDELAKAAYLLAEGDVPFIAAnrddl 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858   153 --LGKGRYYketsglmLDVGGYMKALEYACGIKAEVVGKPSPEFFKSALQAIGVEAHQ-AIMIGDDIVGDVGGAQQCGMR 229
Cdd:TIGR01460 157 vrLGDGRFR-------PGAGAIAAGIKELSGREPTVVGKPSPAIYRAALNLLQARPERrDVMVGDNLRTDILGAKNAGFD 229

                  ....*..
gi 12843858   230 ALQVRTG 236
Cdd:TIGR01460 230 TLLVLTG 236
HAD_Pase_UmpH-like cd07530
UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide ...
12-259 1.31e-29

UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase; Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319832 [Multi-domain]  Cd Length: 247  Bit Score: 111.92  E-value: 1.31e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858  12 RGVLLDISGVLcdssASGATAIAGSVEAVARLKQSPLKVRFCTNESQKSLRELVGVLQQLGFDISEEEVTAPAPATCQIL 91
Cdd:cd07530   1 KGYLIDLDGTV----YRGGTAIPGAVEFIERLREKGIPFLFLTNNSTRTPEDVAAKLAEMGIDVPEEDVYTSALATAQYL 76
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858  92 KE--RGLRPHLLIHEGVRSEFDD----IDMSNPNCVVIAdAGEAFSYQNMNRAfqVLMELENPVLISLGKGRYYKETSGL 165
Cdd:cd07530  77 AEqlPGAKVYVIGEEGLRTALHEagltLTDENPDYVVVG-LDRDLTYEKLAEA--TLAIRNGAKFIATNPDLTLPTERGL 153
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858 166 MLDVGGYMKALEYACGIKAEVVGKPSPEFFKSALQAIGVEAHQAIMIGDDIVGDVGGAQQCGMRALQVRTGKFRPGDEHH 245
Cdd:cd07530 154 LPGNGSVVAALEAATGVKPLFIGKPEPIMMRAALEKLGLKSEETLMVGDRLDTDIAAGIAAGIDTLLVLTGVTTREDLAK 233
                       250
                ....*....|....
gi 12843858 246 PEVQADGYVDNLAE 259
Cdd:cd07530 234 PPYRPTYIVPSLRE 247
HAD_Pase_UmpH-like cd07508
haloacid dehalogenase-like superfamily phosphatases, UmpH/NagD family; Phosphatases in this ...
13-259 1.88e-26

haloacid dehalogenase-like superfamily phosphatases, UmpH/NagD family; Phosphatases in this UmpH/NagD family include Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase , Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase, human PGP phosphoglycolate phosphatase, Schizosaccharomyces pombe PHO2 p-nitrophenylphosphatase, Bacillus AraL a putative sugar phosphatase, and Plasmodium falciparum para nitrophenyl phosphate phosphatase PNPase. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319811 [Multi-domain]  Cd Length: 270  Bit Score: 103.98  E-value: 1.88e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858  13 GVLLDISGVLCDSSasgaTAIAGSVEAVARLKQSPLKVRFCTNESQKSLRELVGVLQQLGFDISEEEVTAPAPATCQILK 92
Cdd:cd07508   1 LVISDCDGVLWHDE----RAIPGAAEFLEALKEAGKKIVFVSNNSSRSRQDYAEKFRKFGVDVPEDQIVTSAKATARFLR 76
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858  93 ER---------------------GLR-------PHLLIHEGVRSEFDDidmSNPNCVVIaDAGEAFSYQNMNRAfqvLME 144
Cdd:cd07508  77 SRkfgkkvyvlgeeglkeelraaGFRiaggpskGIETYAELVEHLEDD---ENVDAVIV-GSDFKLNFAKLRKA---CRY 149
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858 145 LENP--VLISLGKGRYYK-ETSGLMLDVGGYMKALEYACGIKAEVVGKPSPEFFKSALQAIGVEAHQAIMIGDDIVGDVG 221
Cdd:cd07508 150 LRNPgcLFIATAPDRIHPlKDGGPIPGTGAFAAAVEAATGRQPLVLGKPSPWLGELALEKFGIDPERVLFVGDRLATDVL 229
                       250       260       270       280
                ....*....|....*....|....*....|....*....|.
gi 12843858 222 GAQQCGMRALQVRTGKFRPGD---EHHPEVQADGYVDNLAE 259
Cdd:cd07508 230 FGKACGFQTLLVLTGVTTLEDlqaYIDHELVPDYYADSLAD 270
HAD_Pase_UmpH-like cd07531
UmpH/NagD family phosphatase, similar to Bacillus AraL phosphatase, a putative sugar ...
13-261 1.15e-24

UmpH/NagD family phosphatase, similar to Bacillus AraL phosphatase, a putative sugar phosphatase; Bacillus subtilis AraL is a phosphatase displaying activity towards different sugar phosphate substrates; it is encoded by the arabinose metabolic operon araABDLMNPQ-abfA and may play a role in the dephosphorylation of substrates related to l-arabinose metabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319833 [Multi-domain]  Cd Length: 252  Bit Score: 98.80  E-value: 1.15e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858  13 GVLLDISGVLcdssASGATAIAGSVEAVARLKQSPLKVRFCTNESQKSLRELVGVLQQLGFDISEEEVTAPAPATCQILK 92
Cdd:cd07531   2 GYIIDLDGTI----GKGVTLIPGAVEGVKTLRRLGKKIIFLSNNSTRSRRILLERLRSFGIEVGEDEILVSSYVTARFLA 77
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858  93 E--RGLRPHLLIHEGVRSE-----FDDIDMSNPNCVVIADAGEAFSYQNMNRAFQVLmeLENPVLISLGKGRYYKETSGL 165
Cdd:cd07531  78 RekPNAKVFVTGEEGLIEElrlagLEIVDKYDEAEYVVVGSNRKITYELLTKAFRAC--LRGARYIATNPDRIFPAEDGP 155
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858 166 MLDVGGYMKALEYACGIKAE-VVGKPSPEFFKSALQAIGVEAHQAIMIGDDIVGDVGGAQQCGMRALQVRTGKFRPGDEH 244
Cdd:cd07531 156 IPDTAAIIGAIEWCTGREPEvVVGKPSEVMAREALDILGLDAKDCAIVGDQIDVDIAMGKAIGMETALVLTGVTTRENLD 235
                       250
                ....*....|....*..
gi 12843858 245 HPEVQADGYVDNLAEAV 261
Cdd:cd07531 236 RHGYKPDYVLNSIKDLV 252
HAD_PNPase_UmpH-like cd07532
UmpH/NagD family phosphatase para nitrophenyl phosphate phosphatase, similar to Plasmodium ...
6-236 1.11e-22

UmpH/NagD family phosphatase para nitrophenyl phosphate phosphatase, similar to Plasmodium falciparum PNPase; Plasmodium falciparum para nitrophenyl phosphate phosphatase (PNPase) catalyzes the dephosphorylation of thiamine monophosphate to thiamine, other substrates on which its active are nucleotides, phosphorylated sugars, pyridoxal-5-phosphate, and paranitrophenyl phosphate. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319834 [Multi-domain]  Cd Length: 286  Bit Score: 94.29  E-value: 1.11e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858   6 ERLTGVRGVLLDISGVLCdssaSGATAIAGSVEAVARLKQSPLKVRFCTNESQKSLRELVGVLQQLGFDISEEEVTAPAP 85
Cdd:cd07532   1 EWLANIDTVIFDADGVLW----TGDKPIPGAVEVFNALLDKGKKVFIVTNNSTKTREELAKKAKKLGFNVKENNILSSAA 76
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858  86 ATCQILKERGLRPHLLI--HEGVRSEFD------------------------DIDMS-NPNCVVIA-DagEAFSYQNMNR 137
Cdd:cd07532  77 VIADYLKEKGFKKKVYVigEEGIRKELEeagivscggdgedekddsmgdfahNLELDpDVGAVVVGrD--EHFSYPKLMK 154
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858 138 AFQVLMeleNPVLISLGKGR--YYKETSGLML-DVGGYMKALEYACGIKAEVVGKPSPEFFKSALQAIGVEAHQAIMIGD 214
Cdd:cd07532 155 ACNYLR---NPDVLFLATNMdaTFPGPVGRVIpGAGAMVAAIEAVSGRKPLVLGKPNPQILNFLMKSGVIKPERTLMIGD 231
                       250       260
                ....*....|....*....|..
gi 12843858 215 DIVGDVGGAQQCGMRALQVRTG 236
Cdd:cd07532 232 RLKTDILFANNCGFQSLLVGTG 253
HAD_Pase_UmpH-like cd07510
UmpH/NagD family phosphatase, similar to human PGP phosphoglycolate phosphatase and ...
11-264 3.70e-22

UmpH/NagD family phosphatase, similar to human PGP phosphoglycolate phosphatase and Schizosaccharomyces pombe PHO2 p-nitrophenylphosphatase; This subfamily includes the phosphoglycolate phosphatases (human PGP and Arabidopsis thaliana PGLP2) and p-nitrophenylphosphatases (Schizosaccharomyces pombe PHO2 and Saccharomyces PHO13p). It belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319813 [Multi-domain]  Cd Length: 282  Bit Score: 92.84  E-value: 3.70e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858  11 VRGVLLDISGVLCdssaSGATAIAGSVEAVARLKQSPLKVRFCTNESQKSLRELVGVLQQLGFD-ISEEEVTAPAPATCQ 89
Cdd:cd07510   1 VDTFLFDCDGVLW----NGEKAIPGAPETLNLLRSLGKRLVFVTNNSTKSREAYAKKFARLGFTgLKEEEIFSSAYCAAR 76
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858  90 ILKERGLRP-----HLLIHEGVRSEFD----------DIDMSNPNCVVIADAGEA-------------FSYQNMNRAFQV 141
Cdd:cd07510  77 YLRQRLPGPadgkvYVLGGEGLRAELEaagvahlggpDDGLRRAAPKDWLLAGLDpdvgavlvgldehVNYLKLAKATQY 156
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858 142 LMElENPVLISLGKGRYYKETSGLMLDVGGYM-KALEYACGIKAEVVGKPSPEFFKSALQAIGVEAHQAIMIGDDIVGDV 220
Cdd:cd07510 157 LRD-PGCLFVATNRDPWHPLSDGSFIPGTGSLvAALETASGRQAIVVGKPSRFMFDCISSKFSIDPARTCMVGDRLDTDI 235
                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*..
gi 12843858 221 GGAQQCGMRALQVRTGKFRPGD---EHHPEVQADGYVDNLAEAVDLL 264
Cdd:cd07510 236 LFGQNCGLKTLLVLTGVSTLEEalaKLSNDLVPDYYVESLADLLELL 282
Hydrolase_like pfam13242
HAD-hyrolase-like;
186-260 4.78e-22

HAD-hyrolase-like;


Pssm-ID: 433056 [Multi-domain]  Cd Length: 75  Bit Score: 86.90  E-value: 4.78e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 12843858   186 VVGKPSPEFFKSALQAIGVEAHQAIMIGDDIVGDVGGAQQCGMRALQVRTGKFRPGDEHHPEVQADGYVDNLAEA 260
Cdd:pfam13242   1 VCGKPNPGMLERALARLGLDPERTVMIGDRLDTDILGAREAGARTILVLTGVTRPADLEKAPIRPDYVVDDLAEA 75
PGP_euk TIGR01452
phosphoglycolate/pyridoxal phosphate phosphatase family; PGP is an essential enzyme in the ...
11-252 2.87e-18

phosphoglycolate/pyridoxal phosphate phosphatase family; PGP is an essential enzyme in the glycolate salvage pathway in higher organisms (photorespiration in plants). Phosphoglycolate results from the oxidase activity of RubisCO in the Calvin cycle when concentrations of carbon dioxide are low relative to oxygen. In mammals, PGP is found in many tissues, notably in red blood cells where P-glycolate is and important activator of the hydrolysis of 2,3-bisphosphoglycerate, a major modifier of the oxygen affinity of hemoglobin. Pyridoxal phosphate (PLP, Vitamin B6) phosphatase is involved in the degradation of PLP in mammals and is widely distributed in human tissues including erythrocyes. The enzymes described here are members of the Haloacid dehalogenase superfamily of hydrolase enzymes (pfam00702). Unlike the bacterial PGP equivalog (TIGR01449), which is a member of class (subfamily) I, these enzymes are members of class (subfamily) II. These two families have almost certainly arisen from convergent evolution (although these two ancestors may themselves have diverged from a more distant HAD superfamily progenitor). The primary seed sequence for this model comes from Chlamydomonas reinhardtii, a photosynthetic alga. The enzyme has been purified and characterized and these data are fully consistent with the assignment of function as a PGPase involved in photorespiration. The second seed, from Homo sapiens chromosome 22 has been characterized as a pyridoxal phosphatase. Biochemical characterization of partially purified PGP's from various tissues including red blood cells have been performed while one gene for PGP has been localized to chromosome 16p13.3. The sequence used here maps to chromosome 22. There is indeed a related gene on chromosome 16 (and it is expressed, since EST's are found) which shows 46% identity. The chromosome 16 gene is not in evidence in nraa but translated from the genomic sequence. The third seed, from C. elegans, is only supported by sequence similarity. This model is limited to eukaryotic species including S. pombe and S. cerevisiae, although several archaea score between the trusted and noise cutoffs. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase d


Pssm-ID: 273635 [Multi-domain]  Cd Length: 279  Bit Score: 82.22  E-value: 2.87e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858    11 VRGVLLDISGVLCDssasGATAIAGSVEAVARLKQSPLKVRFCTNESQKSLRELVGVLQQLGFDISEEEVTAPAPATCQI 90
Cdd:TIGR01452   2 AQGFIFDCDGVLWL----GERVVPGAPELLDRLARAGKQILFVTNNSTKSRAEYALKFARLGFNGLAEQLFSSALCAARL 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858    91 LKERGLRP---HLLIHEGVRSEFD-----------------------DIDMSNPNCVVIADAGEAFSYQNMNRAFQVLME 144
Cdd:TIGR01452  78 LRQPPDAGkavYVIGEEGLRAELDaagirlagdpgekkqdeadgfmyDIKLDERVGAVVVGYDEHFSYVKLMEACAHLRE 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858   145 lENPVLISLGKGRYYKETSGLML-DVGGYMKALEYACGIKAEVVGKPSPEFFKSALQAIGVEAHQAIMIGDDIVGDVGGA 223
Cdd:TIGR01452 158 -PGCLFVATNRDPWHPLSDGSRTpGTGSLVAAIETASGRQPLVVGKPSPYMFNCITEKFSIDPARTLMVGDRLETDILFG 236
                         250       260
                  ....*....|....*....|....*....
gi 12843858   224 QQCGMRALQVRTGKFRPgdEHHPEVQADG 252
Cdd:TIGR01452 237 HRCGMTTVLVLSGVSQL--EEAQEYLMAG 263
YigB COG1011
FMN and 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, HAD superfamily ...
11-264 4.90e-18

FMN and 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, HAD superfamily (riboflavin biosynthesis) [Coenzyme transport and metabolism];


Pssm-ID: 440635 [Multi-domain]  Cd Length: 220  Bit Score: 80.46  E-value: 4.90e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858  11 VRGVLLDISGVLCDSSASGATAIAGSVEAVARLKQSP-LKVRFCTNESQ---------KSLRELV-GVLQQLGFDISEEE 79
Cdd:COG1011   1 IKAVLFDLDGTLLDFDPVIAEALRALAERLGLLDEAEeLAEAYRAIEYAlwrryergeITFAELLrRLLEELGLDLAEEL 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858  80 VTA-------------PAPATCQILKERGLR------------PHLLIHEGVRSEFDDIdmsnpncVVIADAGeafsyqn 134
Cdd:COG1011  81 AEAflaalpelvepypDALELLEALKARGYRlalltngsaelqEAKLRRLGLDDLFDAV-------VSSEEVG------- 146
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858 135 mnrafqvlmelenpvlislgkgryyketsglmldvggymkaleyacgikaevVGKPSPEFFKSALQAIGVEAHQAIMIGD 214
Cdd:COG1011 147 ----------------------------------------------------VRKPDPEIFELALERLGVPPEEALFVGD 174
                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|
gi 12843858 215 DIVGDVGGAQQCGMRALQVRtgkfRPGDEHHPEVQADGYVDNLAEAVDLL 264
Cdd:COG1011 175 SPETDVAGARAAGMRTVWVN----RSGEPAPAEPRPDYVISDLAELLELL 220
HAD_Pase_UmpH-like cd16422
uncharacterized subfamily of the UmpH/NagD phosphatase family, belongs to the haloacid ...
29-259 2.26e-16

uncharacterized subfamily of the UmpH/NagD phosphatase family, belongs to the haloacid dehalogenase-like superfamily; This uncharacterized subfamily belongs to the UmpH/NagD phosphatase family and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319858 [Multi-domain]  Cd Length: 247  Bit Score: 76.32  E-value: 2.26e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858  29 GATAIAGSVEAVARLKQSPLKVRFCTNESQKSLRELVGVLQQLGFDISEEEVTAPAPATCQILKERGLRP--HLLIHEGV 106
Cdd:cd16422  13 GDDLIPGTLEFLERLHEKKRRYIFLTNNSSKNLADYVEKLNRLGIDAGLDRVFTSGEATIDHLKKEFIKPkiFLLGTKSL 92
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858 107 RSEFDD----IDMSNPNCVVIADAGEaFSYQNMNRAfqvlmelenpvLISLGKGRYYKETS---------GLMLDVGGYM 173
Cdd:cd16422  93 REEFEKagftLDGDDIDVVVLGFDTE-LTYEKLRTA-----------CLLLRRGIPYIATHpdincpseeGPIPDAGSII 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858 174 KALEYACGIKAEVV-GKPSPEFFKSALQAIGVEAHQAIMIGDDIVGDVGGAQQCGMRALQVRTGKFRPGDEHHPEVQADG 252
Cdd:cd16422 161 ALIETSTGRRPDLViGKPNPIILDPVLEKFDYSKEETVMVGDRLYTDIVLGINAGVDSILVLSGETTREDLEDLERKPTY 240

                ....*..
gi 12843858 253 YVDNLAE 259
Cdd:cd16422 241 VFDNVGE 247
Hydrolase_6 pfam13344
Haloacid dehalogenase-like hydrolase; This family is part of the HAD superfamily.
14-112 7.15e-15

Haloacid dehalogenase-like hydrolase; This family is part of the HAD superfamily.


Pssm-ID: 433132  Cd Length: 101  Bit Score: 68.65  E-value: 7.15e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858    14 VLLDISGVLCDssasGATAIAGSVEAVARLKQSPLKVRFCTNESQKSLRELVGVLQQLGFDISEEEVTAPAPATCQILKE 93
Cdd:pfam13344   1 FLFDIDGVLWR----GGEPIPGAAEALRALRAAGKPVVFVTNNSSRSREEYAEKLRKLGFDIDEDEIITSGTAAADYLKE 76
                          90       100
                  ....*....|....*....|.
gi 12843858    94 R--GLRPHLLIHEGVRSEFDD 112
Cdd:pfam13344  77 RkfGKKVLVIGSEGLREELEE 97
Gph COG0546
Phosphoglycolate phosphatase, HAD superfamily [Energy production and conversion];
188-266 2.88e-11

Phosphoglycolate phosphatase, HAD superfamily [Energy production and conversion];


Pssm-ID: 440312 [Multi-domain]  Cd Length: 214  Bit Score: 61.48  E-value: 2.88e-11
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 12843858 188 GKPSPEFFKSALQAIGVEAHQAIMIGDDIVgDVGGAQQCGMRALQVRTGkFRPGDEHHpEVQADGYVDNLAEAVDLLLK 266
Cdd:COG0546 139 AKPKPEPLLEALERLGLDPEEVLMVGDSPH-DIEAARAAGVPFIGVTWG-YGSAEELE-AAGADYVIDSLAELLALLAE 214
PRK10444 PRK10444
HAD-IIA family hydrolase;
11-236 9.69e-11

HAD-IIA family hydrolase;


Pssm-ID: 182466 [Multi-domain]  Cd Length: 248  Bit Score: 60.58  E-value: 9.69e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858   11 VRGVLLDISGVLCDSSasgaTAIAGSVEAVARLKQSPLKVRFCTNESQKSLRELVGVLQQLGFDISEEEVTAPAPATCQI 90
Cdd:PRK10444   1 IKNVICDIDGVLMHDN----VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTSAMATADF 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858   91 LK-ERGLRPHL-----LIHEGVRSEFDDIDMsNPNCVVIADAgEAFSYQNMNRAFQVLME-----LENPvlislgkgryy 159
Cdd:PRK10444  77 LRrQEGKKAYVigegaLIHELYKAGFTITDI-NPDFVIVGET-RSYNWDMMHKAAYFVANgarfiATNP----------- 143
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 12843858  160 kETSGLMLD--VGGYMKALEYACGIKAEVVGKPSPEFFKSALQAIGVEAHQAIMIGDDIVGDVGGAQQCGMRALQVRTG 236
Cdd:PRK10444 144 -DTHGRGFYpaCGALCAGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSG 221
HAD_dREG-2_like cd16415
uncharacterized family of the haloacid dehalogenase-like superfamily, similar to ...
189-244 1.85e-10

uncharacterized family of the haloacid dehalogenase-like superfamily, similar to uncharacterized Drosophila melanogaster rhythmically expressed gene 2 protein and human haloacid dehalogenase-like hydrolase domain-containing protein 3; The haloacid dehalogenase-like (HAD) hydrolases are a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. Members are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319852 [Multi-domain]  Cd Length: 128  Bit Score: 57.30  E-value: 1.85e-10
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 12843858 189 KPSPEFFKSALQAIGVEAHQAIMIGDDIVGDVGGAQQCGMRALQVRtgkfRPGDEH 244
Cdd:cd16415  62 KPDPRIFQKALERLGVSPEEALHVGDDLKNDYLGARAVGWHALLVD----REGALH 113
HisB1/GmhB COG0241
Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily [Amino ...
189-266 2.03e-10

Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily [Amino acid transport and metabolism]; Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily is part of the Pathway/BioSystem: Histidine biosynthesis


Pssm-ID: 440011 [Multi-domain]  Cd Length: 176  Bit Score: 58.18  E-value: 2.03e-10
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 12843858 189 KPSPEFFKSALQAIGVEAHQAIMIGdDIVGDVGGAQQCGMRALQVRTGKfrpGDEHHPEVQADGYVDNLAEAVDLLLK 266
Cdd:COG0241 102 KPKPGMLLQAAERLGIDLSNSYMIG-DRLSDLQAAKAAGCKGILVLTGK---GAEELAEALPDTVADDLAEAVDYLLA 175
HAD_Neu5Ac-Pase_like cd04305
human N-acetylneuraminate-9-phosphate phosphatase, Escherichia coli house-cleaning phosphatase ...
187-230 7.28e-08

human N-acetylneuraminate-9-phosphate phosphatase, Escherichia coli house-cleaning phosphatase YjjG, and related phosphatases; N-acetylneuraminate-9- phosphatase (Neu5Ac-9-Pase; E.C. 3.1.3.29) catalyzes the dephosphorylation of N-acylneuraminate 9-phosphate during the synthesis of N-acetylneuraminate; Escherichia coli nucleotide phosphatase YjjG has a broad pyrimidine nucleotide activity spectrum and functions as an in vivo house-cleaning phosphatase for noncanonical pyrimidine nucleotides. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319800 [Multi-domain]  Cd Length: 109  Bit Score: 49.46  E-value: 7.28e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 12843858 187 VGKPSPEFFKSALQAIGVEAHQAIMIGDDIVGDVGGAQQCGMRA 230
Cdd:cd04305  62 VQKPNPEIFDYALNQLGVKPEETLMVGDSLESDILGAKNAGIKT 105
Hydrolase pfam00702
haloacid dehalogenase-like hydrolase; This family is structurally different from the alpha ...
11-227 1.12e-07

haloacid dehalogenase-like hydrolase; This family is structurally different from the alpha/beta hydrolase family (pfam00561). This family includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure of the family consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of Swiss:P24069. The rest of the fold is composed of the core alpha/beta domain. Those members with the characteriztic DxD triad at the N-terminus are probably phosphatidylglycerolphosphate (PGP) phosphatases involved in cardiolipin biosynthesis in the mitochondria.


Pssm-ID: 459910 [Multi-domain]  Cd Length: 191  Bit Score: 50.66  E-value: 1.12e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858    11 VRGVLLDISGVLCDSSASGATAIAgsveavARLKQSPLKVRFctnesqkslrelvgVLQQLGFDISEEEVTAPAPATCQI 90
Cdd:pfam00702   1 IKAVVFDLDGTLTDGEPVVTEAIA------ELASEHPLAKAI--------------VAAAEDLPIPVEDFTARLLLGKRD 60
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858    91 LKERgLRPHLLIHEGVRSEFDDIDMSNPnCVVIADAGEAFSYQNMNRAFQVLMELENPVLISLGKgryYKETSGLMLDVG 170
Cdd:pfam00702  61 WLEE-LDILRGLVETLEAEGLTVVLVEL-LGVIALADELKLYPGAAEALKALKERGIKVAILTGD---NPEAAEALLRLL 135
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 12843858   171 GYMKALEYACGIKAEVVGKPSPEFFKSALQAIGVEAHQAIMIGDDIVgDVGGAQQCG 227
Cdd:pfam00702 136 GLDDYFDVVISGDDVGVGKPKPEIYLAALERLGVKPEEVLMVGDGVN-DIPAAKAAG 191
PLN02645 PLN02645
phosphoglycolate phosphatase
15-264 5.00e-07

phosphoglycolate phosphatase


Pssm-ID: 178251  Cd Length: 311  Bit Score: 50.10  E-value: 5.00e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858   15 LLDISGVLCdssaSGATAIAGSVEAVARLKQSPLKVRFCTNESQKSLRELVGVLQQLGFDISEEEVTAPAPATCQILKER 94
Cdd:PLN02645  32 IFDCDGVIW----KGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFSSSFAAAAYLKSI 107
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858   95 GLRPHLLIH----EGVRSEFDDIDMsnpNCVviadAGEAFSYQNMNRAFQVLMELENPV-LISLGKGR---YYK------ 160
Cdd:PLN02645 108 NFPKDKKVYvigeEGILEELELAGF---QYL----GGPEDGDKKIELKPGFLMEHDKDVgAVVVGFDRyinYYKiqyatl 180
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858  161 ---ETSGLM-----LDVGGYM-KALEYA----------CGIKAE--VVGKPSPEFFKSALQAIGVEAHQAIMIGDDIVGD 219
Cdd:PLN02645 181 cirENPGCLfiatnRDAVTHLtDAQEWAgagsmvgaikGSTEREplVVGKPSTFMMDYLANKFGIEKSQICMVGDRLDTD 260
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 12843858  220 VGGAQQCGMRALQVRTGKFRPGDEHHPE--VQADGYVDNLAEAVDLL 264
Cdd:PLN02645 261 ILFGQNGGCKTLLVLSGVTSESMLLSPEnkIQPDFYTSKISDFLTLK 307
HAD_BsYqeG-like cd16416
Uncharacterized family of the the haloacid dehalogenase-like superfamily, similar to the ...
188-233 4.24e-06

Uncharacterized family of the the haloacid dehalogenase-like superfamily, similar to the uncharacterized protein Bacillus subtilis YqeG; The haloacid dehalogenase-like (HAD) hydrolases are a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. Members are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319853 [Multi-domain]  Cd Length: 108  Bit Score: 44.57  E-value: 4.24e-06
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 12843858 188 GKPSPEFFKSALQAIGVEAHQAIMIGDDIVGDVGGAQQCGMRALQV 233
Cdd:cd16416  63 GKPRPRAFRRALKEMDLPPEQVAMVGDQLFTDILGGNRAGLYTILV 108
CECR5 TIGR01456
HAD-superfamily class IIA hydrolase, TIGR01456, CECR5; This hypothetical equivalog is a member ...
153-265 5.83e-06

HAD-superfamily class IIA hydrolase, TIGR01456, CECR5; This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all eukaryotes. One sequence (GP|13344995) is called "Cat Eye Syndrome critical region protein 5" (CECR5). This gene has been cloned from a pericentromere region of human chromosome 22 believed to be the location of the gene or genes responsible for Cat Eye Syndrome. This is one of a number of candidate genes. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.


Pssm-ID: 200106 [Multi-domain]  Cd Length: 321  Bit Score: 46.79  E-value: 5.83e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858   153 LGKGRYYKETSGLMLDVGGymKALEYacgikaEVVGKPSPEFFKSALQAIGVEA-------------HQAIMIGDDIVGD 219
Cdd:TIGR01456 205 FGQGAFRLLLERIYLELNG--KPLQY------YTLGKPTKLTYDFAEDVLIDWEkrlsgtkpstspfHALYMVGDNPASD 276
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 12843858   220 VGGAQQCGMRALQVRTGKFRPGDEHHpEVQADGYVDNLAEAVDLLL 265
Cdd:TIGR01456 277 IIGAQNYGWFSCLVKTGVYNGGDDLK-ECKPTLIVNDVFDAVTKIL 321
YqeG COG2179
Predicted phosphohydrolase YqeG, HAD superfamily [General function prediction only];
188-234 1.53e-05

Predicted phosphohydrolase YqeG, HAD superfamily [General function prediction only];


Pssm-ID: 441782  Cd Length: 164  Bit Score: 43.97  E-value: 1.53e-05
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*..
gi 12843858 188 GKPSPEFFKSALQAIGVEAHQAIMIGDDIVGDVGGAQQCGMRALQVR 234
Cdd:COG2179  90 KKPLPRGFRKALKLMGLPPEETAVVGDQLFTDVLGGNRAGLYTILVK 136
PRK13222 PRK13222
N-acetylmuramic acid 6-phosphate phosphatase MupP;
189-264 3.82e-05

N-acetylmuramic acid 6-phosphate phosphatase MupP;


Pssm-ID: 237310 [Multi-domain]  Cd Length: 226  Bit Score: 43.64  E-value: 3.82e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 12843858  189 KPSPEFFKSALQAIGVEAHQAIMIGDDIVgDVGGAQQCGMRALQVRTGkFRPGdEHHPEVQADGYVDNLAEAVDLL 264
Cdd:PRK13222 149 KPDPAPLLLACEKLGLDPEEMLFVGDSRN-DIQAARAAGCPSVGVTYG-YNYG-EPIALSEPDVVIDHFAELLPLL 221
HAD_sEH-N_like cd02603
N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX ...
187-233 4.17e-05

N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive; This family includes the N-terminal phosphatase domain of human soluble epoxide hydrolase (sEH). sEH is a bifunctional enzyme with two distinct enzyme activities, the C-terminal domain has epoxide hydrolysis activity and the N-terminal domain (Ntermphos), which belongs to this family, has lipid phosphatase activity. The latter prefers mono-phosphate esters, and lysophosphatidic acids (LPAs) are the best natural substrates found to date. In addition this family includes Gallus gallus sEH and Xenopus sEH which appears to lack phosphatase activity, and Escherichia coli YihX/HAD4 which selectively hydrolyzes alpha-Glucose-1-P, phosphatase, has significant phosphatase activity against pyridoxal phosphate, and has low beta phosphoglucomutase activity. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319790 [Multi-domain]  Cd Length: 195  Bit Score: 43.49  E-value: 4.17e-05
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*..
gi 12843858 187 VGKPSPEFFKSALQAIGVEAHQAIMIgDDIVGDVGGAQQCGMRALQV 233
Cdd:cd02603 139 VRKPDPEIYQLALERLGVKPEEVLFI-DDREENVEAARALGIHAILV 184
YcjU COG0637
Beta-phosphoglucomutase, HAD superfamily [Carbohydrate transport and metabolism];
188-259 4.87e-05

Beta-phosphoglucomutase, HAD superfamily [Carbohydrate transport and metabolism];


Pssm-ID: 440402 [Multi-domain]  Cd Length: 208  Bit Score: 43.27  E-value: 4.87e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 12843858 188 GKPSPEFFKSALQAIGVEAHQAIMIGDDIVGdVGGAQQCGMRALQVRTgkfrPGDEHHPEVQADGYVDNLAE 259
Cdd:COG0637 141 GKPDPDIYLLAAERLGVDPEECVVFEDSPAG-IRAAKAAGMRVVGVPD----GGTAEEELAGADLVVDDLAE 207
YqeG_hyp_ppase TIGR01668
HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; This family of hypothetical proteins ...
170-233 5.14e-05

HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; This family of hypothetical proteins is a member of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterized members of this subfamily (TIGR01662) and most characterized members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs, all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.


Pssm-ID: 273744  Cd Length: 170  Bit Score: 42.78  E-value: 5.14e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 12843858   170 GGYM-KALEYACGIKAEVVG-KPSPEFFKSALQAIGVEAHQAIMIGDDIVGDVGGAQQCGMRALQV 233
Cdd:TIGR01668  70 GEQRaKAVEKALGIPVLPHAvKPPGCAFRRAHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSYTILV 135
HAD-SF-IIIA TIGR01662
HAD-superfamily hydrolase, subfamily IIIA; This subfamily falls within the Haloacid ...
117-235 1.32e-04

HAD-superfamily hydrolase, subfamily IIIA; This subfamily falls within the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The Class III subfamilies are characterized by the lack of any domains located between either between the first and second conserved catalytic motifs (as in the Class I subfamilies, TIGR01493, TIGR01509, TIGR01488 and TIGR01494) or between the second and third conserved catalytic motifs (as in the Class II subfamilies, TIGR01460 and TIGR01484) of the superfamily domain. The IIIA subfamily contains five major clades: histidinol-phosphatase (TIGR01261) and histidinol-phosphatase-related protein (TIGR00213) which together form a subfamily (TIGR01656), DNA 3'-phosphatase (TIGR01663, TIGR01664), YqeG (TIGR01668) and YrbI (TIGR01670). In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 273742 [Multi-domain]  Cd Length: 135  Bit Score: 40.85  E-value: 1.32e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858   117 NPNCVVIADAGEAFSYQNMNRAFQVLMELENPVLI---SLGKGRYYKETSglmldVGGYMKALEYACGIKAEVVG----- 188
Cdd:TIGR01662  12 TDDVPYVSDEDERILYPEVPDALAELKEAGYKVVIvtnQSGIGRGYFSRS-----FSGRVARRLEELGVPIDILYacpgc 86
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 12843858   189 -KPSPEFFKSAL-QAIGVEAHQAIMIGDDIVGDVGGAQQCGMRALQVRT 235
Cdd:TIGR01662  87 rKPKPGMFLEALkRFNEIDPEESVYVGDQDLTDLQAAKRVGLATILVAP 135
HAD_like cd01427
Haloacid dehalogenase-like hydrolases; The haloacid dehalogenase-like (HAD) superfamily ...
149-233 1.37e-04

Haloacid dehalogenase-like hydrolases; The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others. This superfamily includes a variety of enzymes that catalyze the cleavage of substrate C-Cl, P-C, and P-OP bonds via nucleophilic substitution pathways. All of which use a nucleophilic aspartate in their phosphoryl transfer reaction. They catalyze nucleophilic substitution reactions at phosphorus or carbon centers, using a conserved Asp carboxylate in covalent catalysis. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319763 [Multi-domain]  Cd Length: 106  Bit Score: 40.46  E-value: 1.37e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858 149 VLISlgkGRYYKETSGLM--LDVGGYMKALEYACGIkaeVVGKPSPEFFKSALQAIGVEAHQAIMIGDDiVGDVGGAQQC 226
Cdd:cd01427  27 AIVT---NRSREALRALLekLGLGDLFDGIIGSDGG---GTPKPKPKPLLLLLLKLGVDPEEVLFVGDS-ENDIEAARAA 99

                ....*..
gi 12843858 227 GMRALQV 233
Cdd:cd01427 100 GGRTVAV 106
HAD_PPase cd02616
pyrophosphatase similar to Bacillus subtilis PpaX; This family includes Bacillus subtilis PpaX ...
189-263 1.54e-04

pyrophosphatase similar to Bacillus subtilis PpaX; This family includes Bacillus subtilis PpaX which hydrolyzes pyrophosphate formed during serine-46-phosphorylated HPr (P-Ser-HPr) dephosphorylation by the bifunctional enzyme HPr kinase/phosphorylase. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319797 [Multi-domain]  Cd Length: 207  Bit Score: 41.88  E-value: 1.54e-04
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 12843858 189 KPSPEFFKSALQAIGVEAHQAIMIGDDIVgDVGGAQQCGMRALQVRTGkfRPGDEHHPEVQADGYVDNLAEAVDL 263
Cdd:cd02616 136 KPDPEPVLKALELLGAEPEEALMVGDSPH-DILAGKNAGVKTVGVTWG--YKGREYLKAFNPDFIIDKMSDLLTI 207
HAD_like cd07533
uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily, similar ...
142-236 5.54e-04

uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily, similar to Parvibaculum lavamentivorans HAD-superfamily hydrolase, subfamily IA, variant 1; This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319835 [Multi-domain]  Cd Length: 207  Bit Score: 40.07  E-value: 5.54e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12843858 142 LMELENP-VLISL--GKGRyyketSGL--MLD---VGGYMKALEYAcgikAEVVGKPSPEFFKSALQAIGVEAHQAIMIG 213
Cdd:cd07533  93 LDALAAQgVLLAVatGKSR-----RGLdrVLEqhgLGGYFDATRTA----DDTPSKPHPEMLREILAELGVDPSRAVMVG 163
                        90       100
                ....*....|....*....|...
gi 12843858 214 DDIVgDVGGAQQCGMRALQVRTG 236
Cdd:cd07533 164 DTAY-DMQMAANAGAHAVGVAWG 185
HAD_PGPase cd07512
haloacid dehalogenase-like superfamily phosphoglycolate phosphatase, similar to Rhodobacter ...
189-264 7.06e-04

haloacid dehalogenase-like superfamily phosphoglycolate phosphatase, similar to Rhodobacter sphaeroides CbbZ; Phosphoglycolate phosphatase catalyzes the dephosphorylation of phosphoglycolate; its activity requires divalent cations, especially Mg++. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319815 [Multi-domain]  Cd Length: 214  Bit Score: 39.99  E-value: 7.06e-04
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 12843858 189 KPSPEFFKSALQAIGVEAHQAIMIGDDIVgDVGGAQQCGMRALQVRTGkfrPGDEHHPEVQADGYVDNLAEAVDLL 264
Cdd:cd07512 142 KPDPAPLRAAIRRLGGDVSRALMVGDSET-DAATARAAGVPFVLVTFG---YRHAPVAELPHDAVFSDFDALPDLL 213
HAD-SF-IA-v3 TIGR01509
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; ...
186-230 8.08e-04

haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; This model represents part of one structural subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs. The subfamilies are defined based on the location and the observed or predicted fold of a so-called "capping domain", or the absence of such a domain. Subfamily I consists of sequences in which the capping domain is found in between the first and second catalytic motifs. Subfamily II consists of sequences in which the capping domain is found between the second and third motifs. Subfamily III sequences have no capping domain in either of these positions. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that representing it with a single model is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms: (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only one of the variants each. Variant 3 (this model) is found in the enzymes beta-phosphoglucomutase (TIGR01990) and deoxyglucose-6-phosphatase, while many other enzymes of subfamily IA exhibit this variant as well as variant 1 (TIGR01549). These three variant models were created with the knowledge that there will be overlap among them - this is by design and serves the purpose of eliminating the overlap with models of more distantly related HAD subfamilies caused by an overly broad single model. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 273662 [Multi-domain]  Cd Length: 178  Bit Score: 39.33  E-value: 8.08e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 12843858   186 VVGKPSPEFFKSALQAIGVEAHQAIMIGDDIVGdVGGAQQCGMRA 230
Cdd:TIGR01509 132 GLGKPDPDIYLQALKALGLEPSECVFVDDSPAG-IEAAKAAGMHT 175
HAD_2 pfam13419
Haloacid dehalogenase-like hydrolase;
189-233 1.28e-03

Haloacid dehalogenase-like hydrolase;


Pssm-ID: 404323 [Multi-domain]  Cd Length: 178  Bit Score: 38.72  E-value: 1.28e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 12843858   189 KPSPEFFKSALQAIGVEAHQAIMIGDDIVgDVGGAQQCGMRALQV 233
Cdd:pfam13419 135 KPDPDPILKALEQLGLKPEEVIYVGDSPR-DIEAAKNAGIKVIAV 178
PLN02919 PLN02919
haloacid dehalogenase-like hydrolase family protein
189-235 1.84e-03

haloacid dehalogenase-like hydrolase family protein


Pssm-ID: 215497 [Multi-domain]  Cd Length: 1057  Bit Score: 39.45  E-value: 1.84e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 12843858   189 KPSPEFFKSALQAIGVEAHQAIMIGDDIVGdVGGAQQCGMRALQVRT 235
Cdd:PLN02919  218 KPAPDIFLAAAKILGVPTSECVVIEDALAG-VQAARAAGMRCIAVTT 263
PRK09456 PRK09456
?-D-glucose-1-phosphatase; Provisional
189-233 2.23e-03

?-D-glucose-1-phosphatase; Provisional


Pssm-ID: 181872 [Multi-domain]  Cd Length: 199  Bit Score: 38.10  E-value: 2.23e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 12843858  189 KPSPEFFKSALQAIGVEAHQAIMIgDDIVGDVGGAQQCGMRALQV 233
Cdd:PRK09456 141 KPEARIYQHVLQAEGFSAADAVFF-DDNADNIEAANALGITSILV 184
HAD_PGPase cd16417
Escherichia coli Gph phosphoglycolate phosphatase and related proteins; belongs to the ...
189-261 2.61e-03

Escherichia coli Gph phosphoglycolate phosphatase and related proteins; belongs to the haloacid dehalogenase-like superfamily; Phosphoglycolate phosphatase (PGP; EC 3.1.3.18) catalyzes the conversion of 2-phosphoglycolate into glycolate and phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319854 [Multi-domain]  Cd Length: 212  Bit Score: 37.98  E-value: 2.61e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 12843858 189 KPSPEFFKSALQAIGVEAHQAIMIGDDIVgDVGGAQQCGMRALQVRTGKFRPGDEHHpeVQADGYVDNLAEAV 261
Cdd:cd16417 143 KPDPAPLLHACEKLGIAPAQMLMVGDSRN-DILAARAAGCPSVGLTYGYNYGEDIAA--SGPDAVIDSLAELL 212
HAD_5NT cd04302
haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065; ...
198-267 2.87e-03

haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065; 5'-nucleotidases dephosphorylate nucleoside 5'-monophosphates to nucleosides and inorganic phosphate. Purified Pseudomonas aeruginosa PA0065 displayed high activity toward 5'-UMP and 5'-IMP, significant activity against 5'-XMP and 5'-TMP, and low activity against 5'-CMP. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319798 [Multi-domain]  Cd Length: 209  Bit Score: 37.96  E-value: 2.87e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 12843858 198 ALQAIGVEAHQAIMIGD---DIVgdvgGAQQCGMRALQVRTGkFrpGDEHhpEVQADGyVDNLAEAVDLLLKY 267
Cdd:cd04302 146 ALDTLGIAPEQAVMIGDrkhDII----GARANGIDSIGVLYG-Y--GSED--ELEEAG-ATYIVETPAELLEL 208
HAD_BPGM-like cd07505
beta-phosphoglucomutase-like family of the haloacid dehalogenase-like (HAD) hydrolase ...
184-235 3.04e-03

beta-phosphoglucomutase-like family of the haloacid dehalogenase-like (HAD) hydrolase superfamily; This family represents the beta-phosphoglucomutase-like family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. Family members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. It belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319808 [Multi-domain]  Cd Length: 143  Bit Score: 37.21  E-value: 3.04e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 12843858 184 AEVV--GKPSPEFFKSALQAIGVEAHQAIMIGDDIVGdVGGAQQCGMRALQVRT 235
Cdd:cd07505  91 GDDVerGKPAPDIYLLAAERLGVDPERCLVFEDSLAG-IEAAKAAGMTVVAVPD 143
HAD_L2-DEX cd02588
L-2-haloacid dehalogenase; L-2-Haloacid dehalogenase catalyzes the hydrolytic dehalogenation ...
182-229 6.04e-03

L-2-haloacid dehalogenase; L-2-Haloacid dehalogenase catalyzes the hydrolytic dehalogenation of L-2-haloacids to produce the corresponding D-2-hydroxyacids with an inversion of the C2-configuration. 2-haloacid dehalogenases are of interest for their potential to degrade recalcitrant halogenated environmental pollutants and their use in the synthesis of industrial chemicals. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319787 [Multi-domain]  Cd Length: 216  Bit Score: 37.25  E-value: 6.04e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 12843858 182 IKAEVVG--KPSPEFFKSALQAIGVEAHQAIMIGDDIvGDVGGAQQCGMR 229
Cdd:cd02588 138 LSAEDVRayKPAPAVYELAAERLGVPPDEILHVASHA-WDLAGARALGLR 186
PRK13288 PRK13288
pyrophosphatase PpaX; Provisional
189-227 6.30e-03

pyrophosphatase PpaX; Provisional


Pssm-ID: 237336 [Multi-domain]  Cd Length: 214  Bit Score: 36.93  E-value: 6.30e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 12843858  189 KPSPEFFKSALQAIGVEAHQAIMIGD---DIV-GDVGGAQQCG 227
Cdd:PRK13288 138 KPDPEPVLKALELLGAKPEEALMVGDnhhDILaGKNAGTKTAG 180
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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