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Conserved domains on  [gi|12848162|dbj|BAB27852|]
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unnamed protein product [Mus musculus]

Protein Classification

Yae1 family protein( domain architecture ID 10561203)

Yae1 family protein similar to essential proteins Yae1 and Lto1, which act as binding partners of the cytosolic Fe-S protein assembly (CIA) targeting complex

Gene Ontology:  GO:0062092|GO:0106035

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Yae1_N pfam09811
Essential protein Yae1, N terminal; Members of this family are found in the N terminal region ...
 44-82 6.22e-11

Essential protein Yae1, N terminal; Members of this family are found in the N terminal region of the essential protein Yae1. Their exact function has not, as yet, been determined. The family DUF1715, pfam08215 has now been merged into this family.


:

Pssm-ID: 430844 [Multi-domain]  Cd Length: 39  Bit Score: 55.50  E-value: 6.22e-11
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 12848162    44 GYRDGLDAGKALTLQRGFNQGYKEGADVIINYGLLRGTL 82
Cdd:pfam09811   1 GYREGISEGKEEGLQEGFDEGFQEGAQLGLEIGYLLGKL 39
fliH super family cl35368
flagellar assembly protein FliH;
6-68 2.11e-03

flagellar assembly protein FliH;


The actual alignment was detected with superfamily member PRK05687:

Pssm-ID: 235562 [Multi-domain]  Cd Length: 246  Bit Score: 37.99  E-value: 2.11e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 12848162    6 AAPENASPGDQDVFDEEADESLLAQrkWQGHMRkrvQEGYRDGLDAGKALTLQRGFNQGYKEG 68
Cdd:PRK05687  35 PAAPPPEPPEPEEVPEEEAAPLTEE--ELEAIR---QQAHEEGFAAGKAEGRAEGYEAGYQEG 92
 
Name Accession Description Interval E-value
Yae1_N pfam09811
Essential protein Yae1, N terminal; Members of this family are found in the N terminal region ...
 44-82 6.22e-11

Essential protein Yae1, N terminal; Members of this family are found in the N terminal region of the essential protein Yae1. Their exact function has not, as yet, been determined. The family DUF1715, pfam08215 has now been merged into this family.


Pssm-ID: 430844 [Multi-domain]  Cd Length: 39  Bit Score: 55.50  E-value: 6.22e-11
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 12848162    44 GYRDGLDAGKALTLQRGFNQGYKEGADVIINYGLLRGTL 82
Cdd:pfam09811   1 GYREGISEGKEEGLQEGFDEGFQEGAQLGLEIGYLLGKL 39
fliH PRK05687
flagellar assembly protein FliH;
6-68 2.11e-03

flagellar assembly protein FliH;


Pssm-ID: 235562 [Multi-domain]  Cd Length: 246  Bit Score: 37.99  E-value: 2.11e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 12848162    6 AAPENASPGDQDVFDEEADESLLAQrkWQGHMRkrvQEGYRDGLDAGKALTLQRGFNQGYKEG 68
Cdd:PRK05687  35 PAAPPPEPPEPEEVPEEEAAPLTEE--ELEAIR---QQAHEEGFAAGKAEGRAEGYEAGYQEG 92
 
Name Accession Description Interval E-value
Yae1_N pfam09811
Essential protein Yae1, N terminal; Members of this family are found in the N terminal region ...
 44-82 6.22e-11

Essential protein Yae1, N terminal; Members of this family are found in the N terminal region of the essential protein Yae1. Their exact function has not, as yet, been determined. The family DUF1715, pfam08215 has now been merged into this family.


Pssm-ID: 430844 [Multi-domain]  Cd Length: 39  Bit Score: 55.50  E-value: 6.22e-11
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 12848162    44 GYRDGLDAGKALTLQRGFNQGYKEGADVIINYGLLRGTL 82
Cdd:pfam09811   1 GYREGISEGKEEGLQEGFDEGFQEGAQLGLEIGYLLGKL 39
fliH PRK05687
flagellar assembly protein FliH;
6-68 2.11e-03

flagellar assembly protein FliH;


Pssm-ID: 235562 [Multi-domain]  Cd Length: 246  Bit Score: 37.99  E-value: 2.11e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 12848162    6 AAPENASPGDQDVFDEEADESLLAQrkWQGHMRkrvQEGYRDGLDAGKALTLQRGFNQGYKEG 68
Cdd:PRK05687  35 PAAPPPEPPEPEEVPEEEAAPLTEE--ELEAIR---QQAHEEGFAAGKAEGRAEGYEAGYQEG 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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