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Conserved domains on  [gi|27356589|dbj|BAC53568|]
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blr8303 [Bradyrhizobium diazoefficiens USDA 110]

Protein Classification

DUF2493 domain-containing protein( domain architecture ID 10566435)

DUF2493 domain-containing protein similar to Mycobacterium virus gene 61 protein (Gp61)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YAcAr pfam10686
YspA, cpYpsA-related SLOG family; Family in the SLOG superfamily, related to YspA and cpYpsA ...
 194-260 1.63e-30

YspA, cpYpsA-related SLOG family; Family in the SLOG superfamily, related to YspA and cpYpsA families and shows associations with NAD utilization and ADP-ribosylation domains including NUDIX, NADAR and MACRO. Members of this family are predicted to function as sensors of nucleotide, nucleotide-derived ligands, or nucleic acids, which are potentially processed/modified by associating effectors. Also associates in a distinct system with a phosphoribosyltransferase (PRTase) domain.


:

Pssm-ID: 431435 [Multi-domain]  Cd Length: 66  Bit Score: 109.55  E-value: 1.63e-30
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 27356589   194 PKVALTGGLDFNDHRLIWAKLDQVHAKHADMVLLHGGSpKGAELIAAKWAGNRKVPQIAFKPDWTKH 260
Cdd:pfam10686   1 PRVLVTGGRDFNDHELIWAALDKVRARHPDMVLVHGGA-KGADRIAARWARERGVPQVRFPPDWKRH 66
 
Name Accession Description Interval E-value
YAcAr pfam10686
YspA, cpYpsA-related SLOG family; Family in the SLOG superfamily, related to YspA and cpYpsA ...
 194-260 1.63e-30

YspA, cpYpsA-related SLOG family; Family in the SLOG superfamily, related to YspA and cpYpsA families and shows associations with NAD utilization and ADP-ribosylation domains including NUDIX, NADAR and MACRO. Members of this family are predicted to function as sensors of nucleotide, nucleotide-derived ligands, or nucleic acids, which are potentially processed/modified by associating effectors. Also associates in a distinct system with a phosphoribosyltransferase (PRTase) domain.


Pssm-ID: 431435 [Multi-domain]  Cd Length: 66  Bit Score: 109.55  E-value: 1.63e-30
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 27356589   194 PKVALTGGLDFNDHRLIWAKLDQVHAKHADMVLLHGGSpKGAELIAAKWAGNRKVPQIAFKPDWTKH 260
Cdd:pfam10686   1 PRVLVTGGRDFNDHELIWAALDKVRARHPDMVLVHGGA-KGADRIAARWARERGVPQVRFPPDWKRH 66
 
Name Accession Description Interval E-value
YAcAr pfam10686
YspA, cpYpsA-related SLOG family; Family in the SLOG superfamily, related to YspA and cpYpsA ...
 194-260 1.63e-30

YspA, cpYpsA-related SLOG family; Family in the SLOG superfamily, related to YspA and cpYpsA families and shows associations with NAD utilization and ADP-ribosylation domains including NUDIX, NADAR and MACRO. Members of this family are predicted to function as sensors of nucleotide, nucleotide-derived ligands, or nucleic acids, which are potentially processed/modified by associating effectors. Also associates in a distinct system with a phosphoribosyltransferase (PRTase) domain.


Pssm-ID: 431435 [Multi-domain]  Cd Length: 66  Bit Score: 109.55  E-value: 1.63e-30
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 27356589   194 PKVALTGGLDFNDHRLIWAKLDQVHAKHADMVLLHGGSpKGAELIAAKWAGNRKVPQIAFKPDWTKH 260
Cdd:pfam10686   1 PRVLVTGGRDFNDHELIWAALDKVRARHPDMVLVHGGA-KGADRIAARWARERGVPQVRFPPDWKRH 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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