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Conserved domains on  [gi|62897347|dbj|BAD96614|]
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mitochondrial ribosomal protein S30 variant, partial [Homo sapiens]

Protein Classification

PDCD9 domain-containing protein( domain architecture ID 10537433)

PDCD9 domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PDCD9 pfam07147
Mitochondrial 28S ribosomal protein S30 (PDCD9); This family consists of several eukaryotic ...
1-426 0e+00

Mitochondrial 28S ribosomal protein S30 (PDCD9); This family consists of several eukaryotic mitochondrial 28S ribosomal protein S30 (or programmed cell death protein 9 PDCD9) sequences. The exact function of this family is unknown although it is known to be a component of the mitochondrial ribosome and a component in cellular apoptotic signaling pathways.


:

Pssm-ID: 462101  Cd Length: 441  Bit Score: 646.00  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62897347     1 MAAARCWRPL-LRGPRLSLHTAANAaatatettcQDVAATPVARYPPIVASMTADSKAARLRRIERRQATVHAAESVDEK 79
Cdd:pfam07147   1 MAARARLRLLqRRGLRLVASKSLHV---------QAKAAAASPEYPPIVASLDASSKAARLRRAEEWHEEIHAAPTVEEK 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62897347    80 LRILTKMQFMKY------MVYPQTFALNADRWYQYFTKTVFLSGLPPPPAEPEPEPEPEPepaLDLAALRAVACDCLLQE 153
Cdd:pfam07147  72 IRLLTKIQRPKYygrkawVVYPQTFALNADRWYQHFTKTVFIPGLPERDDEQEEEAGSLD---LDLAALRSDVCDALLQE 148
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62897347   154 HFYLRRRRRVHRYEESEVISLPFLDQLVSTLVGLLSPHNPALAAAALDYRCPVHFYWVRGEEIIPRGHRRGRIDDLRYQI 233
Cdd:pfam07147 149 HQYLKKRRPFDLVERQEQLTQPFLGQLVRALTGSLAANNPHLADSSVDYNPRVEAFWLRGGRIIPKGHRKGRVEGPRFQI 228
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62897347   234 DD-------------KPNNQIRISKQLAEFVPLDY-----SVPIEIPTIKCKPDKLPLFKRQYENHIFVGSKTADPCCYG 295
Cdd:pfam07147 229 DDanelgdrafqyrgKPHSQIRIRQQLPEFVPLDAesadlSFAAEVPVYNLDPDTLPLFRRQYDHAIFVGGKLGDPHCYG 308
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62897347   296 HTQFHLLPDKLRRERLLRQN--CADQIEVVFRANAIASLFAWTGAQAMYQGFWSEADVTRPFVSQAVITDGKYFSFFCYQ 373
Cdd:pfam07147 309 HLQFHLLPDRLKRDRLILRNyeAADQLEVALRANAIASLFAWLGAQAMYQGFWTYNDVTRPFVSQAVITDGKYFSFFCYQ 388
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|...
gi 62897347   374 LNTLALTTQADQNNPRKNICWGTQSKPLYETIEDNDVKGFNDDVLLQIVHFLL 426
Cdd:pfam07147 389 LNTLALHVQADGNNPRKNLCWGTESLPLYESVEDGKVVGFNDEVLKQLVQFLL 441
 
Name Accession Description Interval E-value
PDCD9 pfam07147
Mitochondrial 28S ribosomal protein S30 (PDCD9); This family consists of several eukaryotic ...
1-426 0e+00

Mitochondrial 28S ribosomal protein S30 (PDCD9); This family consists of several eukaryotic mitochondrial 28S ribosomal protein S30 (or programmed cell death protein 9 PDCD9) sequences. The exact function of this family is unknown although it is known to be a component of the mitochondrial ribosome and a component in cellular apoptotic signaling pathways.


Pssm-ID: 462101  Cd Length: 441  Bit Score: 646.00  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62897347     1 MAAARCWRPL-LRGPRLSLHTAANAaatatettcQDVAATPVARYPPIVASMTADSKAARLRRIERRQATVHAAESVDEK 79
Cdd:pfam07147   1 MAARARLRLLqRRGLRLVASKSLHV---------QAKAAAASPEYPPIVASLDASSKAARLRRAEEWHEEIHAAPTVEEK 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62897347    80 LRILTKMQFMKY------MVYPQTFALNADRWYQYFTKTVFLSGLPPPPAEPEPEPEPEPepaLDLAALRAVACDCLLQE 153
Cdd:pfam07147  72 IRLLTKIQRPKYygrkawVVYPQTFALNADRWYQHFTKTVFIPGLPERDDEQEEEAGSLD---LDLAALRSDVCDALLQE 148
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62897347   154 HFYLRRRRRVHRYEESEVISLPFLDQLVSTLVGLLSPHNPALAAAALDYRCPVHFYWVRGEEIIPRGHRRGRIDDLRYQI 233
Cdd:pfam07147 149 HQYLKKRRPFDLVERQEQLTQPFLGQLVRALTGSLAANNPHLADSSVDYNPRVEAFWLRGGRIIPKGHRKGRVEGPRFQI 228
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62897347   234 DD-------------KPNNQIRISKQLAEFVPLDY-----SVPIEIPTIKCKPDKLPLFKRQYENHIFVGSKTADPCCYG 295
Cdd:pfam07147 229 DDanelgdrafqyrgKPHSQIRIRQQLPEFVPLDAesadlSFAAEVPVYNLDPDTLPLFRRQYDHAIFVGGKLGDPHCYG 308
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62897347   296 HTQFHLLPDKLRRERLLRQN--CADQIEVVFRANAIASLFAWTGAQAMYQGFWSEADVTRPFVSQAVITDGKYFSFFCYQ 373
Cdd:pfam07147 309 HLQFHLLPDRLKRDRLILRNyeAADQLEVALRANAIASLFAWLGAQAMYQGFWTYNDVTRPFVSQAVITDGKYFSFFCYQ 388
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|...
gi 62897347   374 LNTLALTTQADQNNPRKNICWGTQSKPLYETIEDNDVKGFNDDVLLQIVHFLL 426
Cdd:pfam07147 389 LNTLALHVQADGNNPRKNLCWGTESLPLYESVEDGKVVGFNDEVLKQLVQFLL 441
 
Name Accession Description Interval E-value
PDCD9 pfam07147
Mitochondrial 28S ribosomal protein S30 (PDCD9); This family consists of several eukaryotic ...
1-426 0e+00

Mitochondrial 28S ribosomal protein S30 (PDCD9); This family consists of several eukaryotic mitochondrial 28S ribosomal protein S30 (or programmed cell death protein 9 PDCD9) sequences. The exact function of this family is unknown although it is known to be a component of the mitochondrial ribosome and a component in cellular apoptotic signaling pathways.


Pssm-ID: 462101  Cd Length: 441  Bit Score: 646.00  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62897347     1 MAAARCWRPL-LRGPRLSLHTAANAaatatettcQDVAATPVARYPPIVASMTADSKAARLRRIERRQATVHAAESVDEK 79
Cdd:pfam07147   1 MAARARLRLLqRRGLRLVASKSLHV---------QAKAAAASPEYPPIVASLDASSKAARLRRAEEWHEEIHAAPTVEEK 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62897347    80 LRILTKMQFMKY------MVYPQTFALNADRWYQYFTKTVFLSGLPPPPAEPEPEPEPEPepaLDLAALRAVACDCLLQE 153
Cdd:pfam07147  72 IRLLTKIQRPKYygrkawVVYPQTFALNADRWYQHFTKTVFIPGLPERDDEQEEEAGSLD---LDLAALRSDVCDALLQE 148
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62897347   154 HFYLRRRRRVHRYEESEVISLPFLDQLVSTLVGLLSPHNPALAAAALDYRCPVHFYWVRGEEIIPRGHRRGRIDDLRYQI 233
Cdd:pfam07147 149 HQYLKKRRPFDLVERQEQLTQPFLGQLVRALTGSLAANNPHLADSSVDYNPRVEAFWLRGGRIIPKGHRKGRVEGPRFQI 228
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62897347   234 DD-------------KPNNQIRISKQLAEFVPLDY-----SVPIEIPTIKCKPDKLPLFKRQYENHIFVGSKTADPCCYG 295
Cdd:pfam07147 229 DDanelgdrafqyrgKPHSQIRIRQQLPEFVPLDAesadlSFAAEVPVYNLDPDTLPLFRRQYDHAIFVGGKLGDPHCYG 308
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62897347   296 HTQFHLLPDKLRRERLLRQN--CADQIEVVFRANAIASLFAWTGAQAMYQGFWSEADVTRPFVSQAVITDGKYFSFFCYQ 373
Cdd:pfam07147 309 HLQFHLLPDRLKRDRLILRNyeAADQLEVALRANAIASLFAWLGAQAMYQGFWTYNDVTRPFVSQAVITDGKYFSFFCYQ 388
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|...
gi 62897347   374 LNTLALTTQADQNNPRKNICWGTQSKPLYETIEDNDVKGFNDDVLLQIVHFLL 426
Cdd:pfam07147 389 LNTLALHVQADGNNPRKNLCWGTESLPLYESVEDGKVVGFNDEVLKQLVQFLL 441
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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