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Conserved domains on  [gi|110736600|dbj|BAF00265|]
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hypothetical protein [Arabidopsis thaliana]

Protein Classification

DDA1 domain-containing protein( domain architecture ID 10562772)

DDA1 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DDA1 pfam10172
Det1 complexing ubiquitin ligase; DDA1 (De-etiolated 1, Damaged DNA binding protein 1 ...
 3-68 1.18e-27

Det1 complexing ubiquitin ligase; DDA1 (De-etiolated 1, Damaged DNA binding protein 1 associated 1) protein binds strongly with DDB1 and Det1 forming a DDD complex which is part of the ubiquitin conjugation system.


:

Pssm-ID: 401980  Cd Length: 66  Bit Score: 95.50  E-value: 1.18e-27
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 110736600    3 SILGDLPSFDPHNFSQHRPSDPS-NPSKMVPTTYRPTHNrTLPPPDQVITTEVKNILIRSFYQRAEE 68
Cdd:pfam10172   1 DFLKGLPSYDPSNFSRFRPSDSSiKPSGKRPSVYLPTHD-TDPPPEQVIVTDKTNILLRYLYQQWDK 66
 
Name Accession Description Interval E-value
DDA1 pfam10172
Det1 complexing ubiquitin ligase; DDA1 (De-etiolated 1, Damaged DNA binding protein 1 ...
 3-68 1.18e-27

Det1 complexing ubiquitin ligase; DDA1 (De-etiolated 1, Damaged DNA binding protein 1 associated 1) protein binds strongly with DDB1 and Det1 forming a DDD complex which is part of the ubiquitin conjugation system.


Pssm-ID: 401980  Cd Length: 66  Bit Score: 95.50  E-value: 1.18e-27
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 110736600    3 SILGDLPSFDPHNFSQHRPSDPS-NPSKMVPTTYRPTHNrTLPPPDQVITTEVKNILIRSFYQRAEE 68
Cdd:pfam10172   1 DFLKGLPSYDPSNFSRFRPSDSSiKPSGKRPSVYLPTHD-TDPPPEQVIVTDKTNILLRYLYQQWDK 66
 
Name Accession Description Interval E-value
DDA1 pfam10172
Det1 complexing ubiquitin ligase; DDA1 (De-etiolated 1, Damaged DNA binding protein 1 ...
 3-68 1.18e-27

Det1 complexing ubiquitin ligase; DDA1 (De-etiolated 1, Damaged DNA binding protein 1 associated 1) protein binds strongly with DDB1 and Det1 forming a DDD complex which is part of the ubiquitin conjugation system.


Pssm-ID: 401980  Cd Length: 66  Bit Score: 95.50  E-value: 1.18e-27
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 110736600    3 SILGDLPSFDPHNFSQHRPSDPS-NPSKMVPTTYRPTHNrTLPPPDQVITTEVKNILIRSFYQRAEE 68
Cdd:pfam10172   1 DFLKGLPSYDPSNFSRFRPSDSSiKPSGKRPSVYLPTHD-TDPPPEQVIVTDKTNILLRYLYQQWDK 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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