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Conserved domains on  [gi|193784844|dbj|BAG53997|]
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unnamed protein product [Homo sapiens]

Protein Classification

EGF_CA domain-containing protein( domain architecture ID 11194776)

EGF_CA domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
EGF_CA pfam07645
Calcium-binding EGF domain;
30-64 1.10e-09

Calcium-binding EGF domain;


:

Pssm-ID: 429571  Cd Length: 32  Bit Score: 51.47  E-value: 1.10e-09
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 193784844   30 DVDECVGLQPVCPQGTTCINTGGSFQCVspeCPEG 64
Cdd:pfam07645   1 DVDECATGTHNCPANTVCVNTIGSFECR---CPDG 32
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
1-28 1.60e-05

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 40.30  E-value: 1.60e-05
                          10        20
                  ....*....|....*....|....*...
gi 193784844    1 MHACVNTPGSYRCTCPGGYRTLADGKSC 28
Cdd:pfam14670   9 SHLCLNTPGGYTCSCPEGYELQDDGRTC 36
 
Name Accession Description Interval E-value
EGF_CA pfam07645
Calcium-binding EGF domain;
30-64 1.10e-09

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 51.47  E-value: 1.10e-09
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 193784844   30 DVDECVGLQPVCPQGTTCINTGGSFQCVspeCPEG 64
Cdd:pfam07645   1 DVDECATGTHNCPANTVCVNTIGSFECR---CPDG 32
EGF_CA smart00179
Calcium-binding EGF-like domain;
30-64 6.83e-06

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 41.46  E-value: 6.83e-06
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 193784844    30 DVDECVGLQPvCPQGTTCINTGGSFQCvspECPEG 64
Cdd:smart00179   1 DIDECASGNP-CQNGGTCVNTVGSYRC---ECPPG 31
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
1-28 1.60e-05

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 40.30  E-value: 1.60e-05
                          10        20
                  ....*....|....*....|....*...
gi 193784844    1 MHACVNTPGSYRCTCPGGYRTLADGKSC 28
Cdd:pfam14670   9 SHLCLNTPGGYTCSCPEGYELQDDGRTC 36
EGF_CA smart00179
Calcium-binding EGF-like domain;
4-29 1.90e-05

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 40.31  E-value: 1.90e-05
                           10        20
                   ....*....|....*....|....*.
gi 193784844     4 CVNTPGSYRCTCPGGYRtlaDGKSCE 29
Cdd:smart00179  17 CVNTVGSYRCECPPGYT---DGRNCE 39
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
30-64 1.38e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 38.00  E-value: 1.38e-04
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 193784844  30 DVDECVGLQPvCPQGTTCINTGGSFQCvspECPEG 64
Cdd:cd00054    1 DIDECASGNP-CQNGGTCVNTVGSYRC---SCPPG 31
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
4-29 1.64e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 37.62  E-value: 1.64e-04
                         10        20
                 ....*....|....*....|....*.
gi 193784844   4 CVNTPGSYRCTCPGGYRtladGKSCE 29
Cdd:cd00054   17 CVNTVGSYRCSCPPGYT----GRNCE 38
 
Name Accession Description Interval E-value
EGF_CA pfam07645
Calcium-binding EGF domain;
30-64 1.10e-09

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 51.47  E-value: 1.10e-09
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 193784844   30 DVDECVGLQPVCPQGTTCINTGGSFQCVspeCPEG 64
Cdd:pfam07645   1 DVDECATGTHNCPANTVCVNTIGSFECR---CPDG 32
EGF_CA smart00179
Calcium-binding EGF-like domain;
30-64 6.83e-06

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 41.46  E-value: 6.83e-06
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 193784844    30 DVDECVGLQPvCPQGTTCINTGGSFQCvspECPEG 64
Cdd:smart00179   1 DIDECASGNP-CQNGGTCVNTVGSYRC---ECPPG 31
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
1-28 1.60e-05

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 40.30  E-value: 1.60e-05
                          10        20
                  ....*....|....*....|....*...
gi 193784844    1 MHACVNTPGSYRCTCPGGYRTLADGKSC 28
Cdd:pfam14670   9 SHLCLNTPGGYTCSCPEGYELQDDGRTC 36
EGF_CA smart00179
Calcium-binding EGF-like domain;
4-29 1.90e-05

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 40.31  E-value: 1.90e-05
                           10        20
                   ....*....|....*....|....*.
gi 193784844     4 CVNTPGSYRCTCPGGYRtlaDGKSCE 29
Cdd:smart00179  17 CVNTVGSYRCECPPGYT---DGRNCE 39
cEGF pfam12662
Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved ...
12-33 5.35e-05

Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved cysteine residues disulfide-bonded into the characteriztic pattern 'ababcc'. They are found in blood coagulation proteins such as fibrillin, Clr and Cls, thrombomodulin, and the LDL receptor. The core fold of the EGF domain consists of two small beta-hairpins packed against each other. Two major structural variants have been identified based on the structural context of the C-terminal cysteine residue of disulfide 'c' in the C-terminal hairpin: hEGFs and cEGFs. In cEGFs the C-terminal thiol resides on the C-terminal beta-sheet, resulting in long loop-lengths between the cysteine residues of disulfide 'c', typically C[10+]XC. These longer loop-lengths may have arisen by selective cysteine loss from a four-disulfide EGF template such as laminin or integrin. Tandem cEGF domains have five linking residues between terminal cysteines of adjacent domains. cEGF domains may or may not bind calcium in the linker region. cEGF domains with the consensus motif CXN4X[F,Y]XCXC are hydroxylated exclusively on the asparagine residue.


Pssm-ID: 463661  Cd Length: 22  Bit Score: 38.93  E-value: 5.35e-05
                          10        20
                  ....*....|....*....|..
gi 193784844   12 RCTCPGGYRTLADGKSCEDVDE 33
Cdd:pfam12662   1 TCSCPPGYQLDPDGRTCVDIDE 22
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
30-64 1.38e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 38.00  E-value: 1.38e-04
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 193784844  30 DVDECVGLQPvCPQGTTCINTGGSFQCvspECPEG 64
Cdd:cd00054    1 DIDECASGNP-CQNGGTCVNTVGSYRC---SCPPG 31
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
4-29 1.64e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 37.62  E-value: 1.64e-04
                         10        20
                 ....*....|....*....|....*.
gi 193784844   4 CVNTPGSYRCTCPGGYRtladGKSCE 29
Cdd:cd00054   17 CVNTVGSYRCSCPPGYT----GRNCE 38
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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