|
Name |
Accession |
Description |
Interval |
E-value |
| Muskelin_N |
pfam06588 |
Muskelin N-terminus; This family represents the N-terminal region of muskelin and is found in ... |
11-184 |
2.73e-109 |
|
Muskelin N-terminus; This family represents the N-terminal region of muskelin and is found in conjunction with several pfam01344 repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1.
Pssm-ID: 284099 Cd Length: 197 Bit Score: 329.47 E-value: 2.73e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194377386 11 NILVDKPNDQSSRWSSESNYPPQYLILKLERPAIVQNITFGKYEKTHVCNLKKFKVFGGMNEENMTELLSSGLKNDYNKE 90
Cdd:pfam06588 23 NILVDDPNDQNSRWSTSTNSPPQYLILKLPRPAIVTTITFGKYEKMHVCNLKKFRVYGGRDGEEMRELLCGGLKNDSNME 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194377386 91 TFTLKHKI-DEQMFPCRFIKIVPLLSWGPSFNFSIWYVELSGIDDPDIVQPCLNWYSKYREQEAIRLCLKHFRQHNYTEA 169
Cdd:pfam06588 103 TFNLLVKDyNEIYFPCQYIKIVPLLAWGPSFNFSIWYVELHGIDDPSAVSEFVKNYEMVREGEAIRLCLKHFRQCGYLDI 182
|
170
....*....|....*
gi 194377386 170 FESLQKKTKIALEHP 184
Cdd:pfam06588 183 FEILQKRTSDKIEHP 197
|
|
| NanM |
COG3055 |
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
261-585 |
2.24e-12 |
|
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 67.87 E-value: 2.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194377386 261 TVYLFGGWDGTQDLADFWAYSVKENQWtcisrdTEKENGPSARSCHKMCIdIQRRQIYTLGRYldSSVRNSKSLKSDFYR 340
Cdd:COG3055 24 KVYVAGGLSGGSASNSFEVYDPATNTW------SELAPLPGPPRHHAAAV-AQDGKLYVFGGF--TGANPSSTPLNDVYV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194377386 341 YDIDTNTWmllsedTAADGGPKLVFDHQMCMDSEKhmIYTFGGRilTCNGSVDDsrasepqfsgLFAFNCQCQTWKLLre 420
Cdd:COG3055 95 YDPATNTW------TKLAPMPTPRGGATALLLDGK--IYVVGGW--DDGGNVAW----------VEVYDPATGTWTQL-- 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194377386 421 dscnagPEDIQSRIGHCMLFHSKNRcLYVFGGQRSktylndffsydvdsdhvdiiSDGTKKDSGMVPMTGFTQRATIDPE 500
Cdd:COG3055 153 ------APLPTPRDHLAAAVLPDGK-ILVIGGRNG--------------------SGFSNTWTTLAPLPTARAGHAAAVL 205
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194377386 501 LNEIHVLSGlskdkekrEENVRNSFWIYDIVRNSWScvykndqAAKDNPTkslqeeepcPRFAHQLV-YDElhKVhYLFG 579
Cdd:COG3055 206 GGKILVFGG--------ESGFSDEVEAYDPATNTWT-------ALGELPT---------PRHGHAAVlTDG--KV-YVIG 258
|
....*...
gi 194377386 580 G--NPGKS 585
Cdd:COG3055 259 GetKPGVR 266
|
|
| Kelch_3 |
pfam13415 |
Galactose oxidase, central domain; |
259-311 |
3.81e-07 |
|
Galactose oxidase, central domain;
Pssm-ID: 433188 [Multi-domain] Cd Length: 49 Bit Score: 47.28 E-value: 3.81e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 194377386 259 TETVYLFGGWD--GTQDLADFWAYSVKENQWTCISrdtekeNGPSARSCHKMCID 311
Cdd:pfam13415 1 GDKLYIFGGLGfdGQTRLNDLYVYDLDTNTWTQIG------DLPPPRSGHSATYI 49
|
|
| PLN02153 |
PLN02153 |
epithiospecifier protein |
284-452 |
1.35e-06 |
|
epithiospecifier protein
Pssm-ID: 177814 [Multi-domain] Cd Length: 341 Bit Score: 51.14 E-value: 1.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194377386 284 ENQWtcISRDTEKENGPSARSCHKMCIdiQRRQIYTLGryldSSVRNSKSLKSDFYRYDIDTNTWMLlsedTAADGGPKL 363
Cdd:PLN02153 6 QGGW--IKVEQKGGKGPGPRCSHGIAV--VGDKLYSFG----GELKPNEHIDKDLYVFDFNTHTWSI----APANGDVPR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194377386 364 VFDHQMCMDSEKHMIYTFGGRiltcngsvDDSRAsepqFSGLFAFNCQCQTWKLLREDSCNAGPEdiqSRIGHCMLfhSK 443
Cdd:PLN02153 74 ISCLGVRMVAVGTKLYIFGGR--------DEKRE----FSDFYSYDTVKNEWTFLTKLDEEGGPE---ARTFHSMA--SD 136
|
....*....
gi 194377386 444 NRCLYVFGG 452
Cdd:PLN02153 137 ENHVYVFGG 145
|
|
| Kelch |
smart00612 |
Kelch domain; |
262-288 |
1.33e-03 |
|
Kelch domain;
Pssm-ID: 128874 [Multi-domain] Cd Length: 47 Bit Score: 37.15 E-value: 1.33e-03
10 20
....*....|....*....|....*..
gi 194377386 262 VYLFGGWDGTQDLADFWAYSVKENQWT 288
Cdd:smart00612 2 IYVVGGFDGGQRLKSVEVYDPETNKWT 28
|
|
| LisH |
smart00667 |
Lissencephaly type-1-like homology motif; Alpha-helical motif present in Lis1, treacle, ... |
149-179 |
7.93e-03 |
|
Lissencephaly type-1-like homology motif; Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Pssm-ID: 128913 Cd Length: 34 Bit Score: 34.33 E-value: 7.93e-03
10 20 30
....*....|....*....|....*....|.
gi 194377386 149 REQEAIRLCLKHFRQHNYTEAFESLQKKTKI 179
Cdd:smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGL 32
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| Muskelin_N |
pfam06588 |
Muskelin N-terminus; This family represents the N-terminal region of muskelin and is found in ... |
11-184 |
2.73e-109 |
|
Muskelin N-terminus; This family represents the N-terminal region of muskelin and is found in conjunction with several pfam01344 repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1.
Pssm-ID: 284099 Cd Length: 197 Bit Score: 329.47 E-value: 2.73e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194377386 11 NILVDKPNDQSSRWSSESNYPPQYLILKLERPAIVQNITFGKYEKTHVCNLKKFKVFGGMNEENMTELLSSGLKNDYNKE 90
Cdd:pfam06588 23 NILVDDPNDQNSRWSTSTNSPPQYLILKLPRPAIVTTITFGKYEKMHVCNLKKFRVYGGRDGEEMRELLCGGLKNDSNME 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194377386 91 TFTLKHKI-DEQMFPCRFIKIVPLLSWGPSFNFSIWYVELSGIDDPDIVQPCLNWYSKYREQEAIRLCLKHFRQHNYTEA 169
Cdd:pfam06588 103 TFNLLVKDyNEIYFPCQYIKIVPLLAWGPSFNFSIWYVELHGIDDPSAVSEFVKNYEMVREGEAIRLCLKHFRQCGYLDI 182
|
170
....*....|....*
gi 194377386 170 FESLQKKTKIALEHP 184
Cdd:pfam06588 183 FEILQKRTSDKIEHP 197
|
|
| NanM |
COG3055 |
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
261-585 |
2.24e-12 |
|
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 67.87 E-value: 2.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194377386 261 TVYLFGGWDGTQDLADFWAYSVKENQWtcisrdTEKENGPSARSCHKMCIdIQRRQIYTLGRYldSSVRNSKSLKSDFYR 340
Cdd:COG3055 24 KVYVAGGLSGGSASNSFEVYDPATNTW------SELAPLPGPPRHHAAAV-AQDGKLYVFGGF--TGANPSSTPLNDVYV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194377386 341 YDIDTNTWmllsedTAADGGPKLVFDHQMCMDSEKhmIYTFGGRilTCNGSVDDsrasepqfsgLFAFNCQCQTWKLLre 420
Cdd:COG3055 95 YDPATNTW------TKLAPMPTPRGGATALLLDGK--IYVVGGW--DDGGNVAW----------VEVYDPATGTWTQL-- 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194377386 421 dscnagPEDIQSRIGHCMLFHSKNRcLYVFGGQRSktylndffsydvdsdhvdiiSDGTKKDSGMVPMTGFTQRATIDPE 500
Cdd:COG3055 153 ------APLPTPRDHLAAAVLPDGK-ILVIGGRNG--------------------SGFSNTWTTLAPLPTARAGHAAAVL 205
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194377386 501 LNEIHVLSGlskdkekrEENVRNSFWIYDIVRNSWScvykndqAAKDNPTkslqeeepcPRFAHQLV-YDElhKVhYLFG 579
Cdd:COG3055 206 GGKILVFGG--------ESGFSDEVEAYDPATNTWT-------ALGELPT---------PRHGHAAVlTDG--KV-YVIG 258
|
....*...
gi 194377386 580 G--NPGKS 585
Cdd:COG3055 259 GetKPGVR 266
|
|
| Kelch_3 |
pfam13415 |
Galactose oxidase, central domain; |
259-311 |
3.81e-07 |
|
Galactose oxidase, central domain;
Pssm-ID: 433188 [Multi-domain] Cd Length: 49 Bit Score: 47.28 E-value: 3.81e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 194377386 259 TETVYLFGGWD--GTQDLADFWAYSVKENQWTCISrdtekeNGPSARSCHKMCID 311
Cdd:pfam13415 1 GDKLYIFGGLGfdGQTRLNDLYVYDLDTNTWTQIG------DLPPPRSGHSATYI 49
|
|
| F5_F8_type_C |
pfam00754 |
F5/8 type C domain; This domain is also known as the discoidin (DS) domain family. |
18-129 |
6.58e-07 |
|
F5/8 type C domain; This domain is also known as the discoidin (DS) domain family.
Pssm-ID: 459925 [Multi-domain] Cd Length: 127 Bit Score: 48.98 E-value: 6.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194377386 18 NDQSSRWSSESNYPPQYLILKLERPAIVQNITFGKYEKTHVCNLKKFKVFGGMNEENMTELLSSGLKNDYNKETftlkhk 97
Cdd:pfam00754 20 GDPNTAWSAWSGDDPQWIQVDLGKPKKITGVVTQGRQDGSNGYVTSYKIEYSLDGENWTTVKDEKIPGNNDNNT------ 93
|
90 100 110
....*....|....*....|....*....|....*.
gi 194377386 98 IDEQMFPC----RFIKIVPlLSWGPSFNFSIWyVEL 129
Cdd:pfam00754 94 PVTNTFDPpikaRYVRIVP-TSWNGGNGIALR-AEL 127
|
|
| PLN02153 |
PLN02153 |
epithiospecifier protein |
284-452 |
1.35e-06 |
|
epithiospecifier protein
Pssm-ID: 177814 [Multi-domain] Cd Length: 341 Bit Score: 51.14 E-value: 1.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194377386 284 ENQWtcISRDTEKENGPSARSCHKMCIdiQRRQIYTLGryldSSVRNSKSLKSDFYRYDIDTNTWMLlsedTAADGGPKL 363
Cdd:PLN02153 6 QGGW--IKVEQKGGKGPGPRCSHGIAV--VGDKLYSFG----GELKPNEHIDKDLYVFDFNTHTWSI----APANGDVPR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194377386 364 VFDHQMCMDSEKHMIYTFGGRiltcngsvDDSRAsepqFSGLFAFNCQCQTWKLLREDSCNAGPEdiqSRIGHCMLfhSK 443
Cdd:PLN02153 74 ISCLGVRMVAVGTKLYIFGGR--------DEKRE----FSDFYSYDTVKNEWTFLTKLDEEGGPE---ARTFHSMA--SD 136
|
....*....
gi 194377386 444 NRCLYVFGG 452
Cdd:PLN02153 137 ENHVYVFGG 145
|
|
| Kelch_1 |
pfam01344 |
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ... |
247-291 |
4.52e-06 |
|
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.
Pssm-ID: 396078 [Multi-domain] Cd Length: 46 Bit Score: 44.14 E-value: 4.52e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 194377386 247 MRGGHQMVidVQTETVYLFGGWDGTQDLADFWAYSVKENQWTCIS 291
Cdd:pfam01344 1 RRSGAGVV--VVGGKIYVIGGFDGNQSLNSVEVYDPETNTWSKLP 43
|
|
| PLN02153 |
PLN02153 |
epithiospecifier protein |
262-353 |
4.72e-06 |
|
epithiospecifier protein
Pssm-ID: 177814 [Multi-domain] Cd Length: 341 Bit Score: 49.21 E-value: 4.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194377386 262 VYLFGGWDGTQDLADFWAYSVKENQWTCISRdTEKENGPSARSCHKMCIDiqRRQIYTLGRYLDSSVRNSKSLKSDFYRY 341
Cdd:PLN02153 88 LYIFGGRDEKREFSDFYSYDTVKNEWTFLTK-LDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEAY 164
|
90
....*....|..
gi 194377386 342 DIDTNTWMLLSE 353
Cdd:PLN02153 165 NIADGKWVQLPD 176
|
|
| PLN02193 |
PLN02193 |
nitrile-specifier protein |
261-363 |
1.07e-04 |
|
nitrile-specifier protein
Pssm-ID: 177844 [Multi-domain] Cd Length: 470 Bit Score: 45.33 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194377386 261 TVYLFGGWDGTQDLADFWAYSVKENQWTCIsrdTEKENGPSARSCHKMCIDiqRRQIYTLGRYldSSVRNSKSLKSdfyr 340
Cdd:PLN02193 230 TLYVFGGRDASRQYNGFYSFDTTTNEWKLL---TPVEEGPTPRSFHSMAAD--EENVYVFGGV--SATARLKTLDS---- 298
|
90 100
....*....|....*....|....*.
gi 194377386 341 YDIDTNTWMLLS---EDTAADGGPKL 363
Cdd:PLN02193 299 YNIVDKKWFHCStpgDSFSIRGGAGL 324
|
|
| PLN02153 |
PLN02153 |
epithiospecifier protein |
348-535 |
2.36e-04 |
|
epithiospecifier protein
Pssm-ID: 177814 [Multi-domain] Cd Length: 341 Bit Score: 43.82 E-value: 2.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194377386 348 WMLLSEDTAADGGPKLvfDHQMCMDSEKhmIYTFGGRiLTCNGSVDDSrasepqfsgLFAFNCQCQTWKLLredSCNAGP 427
Cdd:PLN02153 9 WIKVEQKGGKGPGPRC--SHGIAVVGDK--LYSFGGE-LKPNEHIDKD---------LYVFDFNTHTWSIA---PANGDV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194377386 428 EDIqSRIGHCMLfhSKNRCLYVFGGQRSKTYLNDFFSYDVDSDHVDIIsdgTKKDSGMVPMTGFTQRATIDPelNEIHVL 507
Cdd:PLN02153 72 PRI-SCLGVRMV--AVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFL---TKLDEEGGPEARTFHSMASDE--NHVYVF 143
|
170 180
....*....|....*....|....*...
gi 194377386 508 SGLSKDKEKREENVRNSFWIYDIVRNSW 535
Cdd:PLN02153 144 GGVSKGGLMKTPERFRTIEAYNIADGKW 171
|
|
| Kelch_4 |
pfam13418 |
Galactose oxidase, central domain; |
248-291 |
4.65e-04 |
|
Galactose oxidase, central domain;
Pssm-ID: 433191 [Multi-domain] Cd Length: 49 Bit Score: 38.36 E-value: 4.65e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 194377386 248 RGGHQMVIdVQTETVYLFGG--WDGTQdLADFWAYSVKENQWTCIS 291
Cdd:pfam13418 2 RAYHTSTS-IPDDTIYLFGGegEDGTL-LSDLWVFDLSTNEWTRLG 45
|
|
| PLN02193 |
PLN02193 |
nitrile-specifier protein |
360-535 |
5.82e-04 |
|
nitrile-specifier protein
Pssm-ID: 177844 [Multi-domain] Cd Length: 470 Bit Score: 43.02 E-value: 5.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194377386 360 GPKLVFDHQMCMDSEKhmIYTFGGRiLTCNGSVDDSrasepqfsgLFAFNCQCQTWKLlredSCNAGPEDIQSRIGHCML 439
Cdd:PLN02193 162 GPGLRCSHGIAQVGNK--IYSFGGE-FTPNQPIDKH---------LYVFDLETRTWSI----SPATGDVPHLSCLGVRMV 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194377386 440 fhSKNRCLYVFGGQRSKTYLNDFFSYDVDSDHVDIIsdgTKKDSGMVPMTGFTQRAtidpELNEIHVLSGLSKdkekree 519
Cdd:PLN02193 226 --SIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLL---TPVEEGPTPRSFHSMAA----DEENVYVFGGVSA------- 289
|
170
....*....|....*..
gi 194377386 520 NVR-NSFWIYDIVRNSW 535
Cdd:PLN02193 290 TARlKTLDSYNIVDKKW 306
|
|
| Kelch_1 |
pfam01344 |
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ... |
433-470 |
1.03e-03 |
|
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.
Pssm-ID: 396078 [Multi-domain] Cd Length: 46 Bit Score: 37.21 E-value: 1.03e-03
10 20 30
....*....|....*....|....*....|....*...
gi 194377386 433 RIGHCMLFHskNRCLYVFGGQRSKTYLNDFFSYDVDSD 470
Cdd:pfam01344 2 RSGAGVVVV--GGKIYVIGGFDGNQSLNSVEVYDPETN 37
|
|
| Kelch |
smart00612 |
Kelch domain; |
262-288 |
1.33e-03 |
|
Kelch domain;
Pssm-ID: 128874 [Multi-domain] Cd Length: 47 Bit Score: 37.15 E-value: 1.33e-03
10 20
....*....|....*....|....*..
gi 194377386 262 VYLFGGWDGTQDLADFWAYSVKENQWT 288
Cdd:smart00612 2 IYVVGGFDGGQRLKSVEVYDPETNKWT 28
|
|
| LisH |
smart00667 |
Lissencephaly type-1-like homology motif; Alpha-helical motif present in Lis1, treacle, ... |
149-179 |
7.93e-03 |
|
Lissencephaly type-1-like homology motif; Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Pssm-ID: 128913 Cd Length: 34 Bit Score: 34.33 E-value: 7.93e-03
10 20 30
....*....|....*....|....*....|.
gi 194377386 149 REQEAIRLCLKHFRQHNYTEAFESLQKKTKI 179
Cdd:smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGL 32
|
|
|