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Conserved domains on  [gi|222121037|dbj|BAH18372|]
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conserved hypothetical protein [Macrococcoides caseolyticum JCSC5402]

Protein Classification

YolD-like family protein( domain architecture ID 10556105)

YolD-like family protein is an uncharacterized protein similar to Bacillus subtilis YolD, YqjX, and YozL

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YolD pfam08863
YolD-like protein; Members of this family are functionally uncharacterized. However it has ...
 43-137 5.00e-25

YolD-like protein; Members of this family are functionally uncharacterized. However it has been predicted that these proteins are functionally equivalent to the UmuD subunit of polymerase V from gram-negative bacteria. This family has been shown to belong to the WYL-like superfamily.


:

Pssm-ID: 430270  Cd Length: 94  Bit Score: 91.47  E-value: 5.00e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222121037   43 TMPEQFLDVKRQIDAQTKIERPELSEDRLQEINEVLHSALSKQQPVYIDYYIDGTIQHTKMYIEKVDQWAAIIIGTTVNE 122
Cdd:pfam08863   1 MLPEHVEALRELIEEQKKVEKPILDEQQLEEINEILQEALEENQPVTITYYDDGELEEVTGYVEKIDPLNKRLRITDAEG 80

                          90
                  ....*....|....*
gi 222121037  123 GHTYFvSFLDIVNLE 137
Cdd:pfam08863  81 EEKWI-KFSDIVEVE 94
 
Name Accession Description Interval E-value
YolD pfam08863
YolD-like protein; Members of this family are functionally uncharacterized. However it has ...
 43-137 5.00e-25

YolD-like protein; Members of this family are functionally uncharacterized. However it has been predicted that these proteins are functionally equivalent to the UmuD subunit of polymerase V from gram-negative bacteria. This family has been shown to belong to the WYL-like superfamily.


Pssm-ID: 430270  Cd Length: 94  Bit Score: 91.47  E-value: 5.00e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222121037   43 TMPEQFLDVKRQIDAQTKIERPELSEDRLQEINEVLHSALSKQQPVYIDYYIDGTIQHTKMYIEKVDQWAAIIIGTTVNE 122
Cdd:pfam08863   1 MLPEHVEALRELIEEQKKVEKPILDEQQLEEINEILQEALEENQPVTITYYDDGELEEVTGYVEKIDPLNKRLRITDAEG 80

                          90
                  ....*....|....*
gi 222121037  123 GHTYFvSFLDIVNLE 137
Cdd:pfam08863  81 EEKWI-KFSDIVEVE 94
 
Name Accession Description Interval E-value
YolD pfam08863
YolD-like protein; Members of this family are functionally uncharacterized. However it has ...
 43-137 5.00e-25

YolD-like protein; Members of this family are functionally uncharacterized. However it has been predicted that these proteins are functionally equivalent to the UmuD subunit of polymerase V from gram-negative bacteria. This family has been shown to belong to the WYL-like superfamily.


Pssm-ID: 430270  Cd Length: 94  Bit Score: 91.47  E-value: 5.00e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 222121037   43 TMPEQFLDVKRQIDAQTKIERPELSEDRLQEINEVLHSALSKQQPVYIDYYIDGTIQHTKMYIEKVDQWAAIIIGTTVNE 122
Cdd:pfam08863   1 MLPEHVEALRELIEEQKKVEKPILDEQQLEEINEILQEALEENQPVTITYYDDGELEEVTGYVEKIDPLNKRLRITDAEG 80

                          90
                  ....*....|....*
gi 222121037  123 GHTYFvSFLDIVNLE 137
Cdd:pfam08863  81 EEKWI-KFSDIVEVE 94
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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