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Conserved domains on  [gi|1877322978|dbj|BBQ81243|]
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hypothetical protein WP3W18E01_P10900 (plasmid) [Raoultella ornithinolytica]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG3547 super family cl34632
Transposase [Mobilome: prophages, transposons];
13-51 8.40e-10

Transposase [Mobilome: prophages, transposons];


The actual alignment was detected with superfamily member COG3547:

Pssm-ID: 442768 [Multi-domain]  Cd Length: 349  Bit Score: 51.85  E-value: 8.40e-10
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1877322978  13 YDEMCLRGKPKMVAIGALMRKLVHWCYGVLKTRTVFNDE 51
Cdd:COG3547   306 YQRLLAEGKPKKVAIVALARKLARIIWAVLKDGTPYDPP 344
 
Name Accession Description Interval E-value
COG3547 COG3547
Transposase [Mobilome: prophages, transposons];
13-51 8.40e-10

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 442768 [Multi-domain]  Cd Length: 349  Bit Score: 51.85  E-value: 8.40e-10
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1877322978  13 YDEMCLRGKPKMVAIGALMRKLVHWCYGVLKTRTVFNDE 51
Cdd:COG3547   306 YQRLLAEGKPKKVAIVALARKLARIIWAVLKDGTPYDPP 344
transpos_IS110 NF033542
IS110 family transposase; Proteins of this family are DEDD (Asp, Glu, Asp, Asp) type ...
 18-47 8.11e-06

IS110 family transposase; Proteins of this family are DEDD (Asp, Glu, Asp, Asp) type transposases, which are encoded by the IS110 family elements.


Pssm-ID: 468073 [Multi-domain]  Cd Length: 345  Bit Score: 40.78  E-value: 8.11e-06
                          10        20        30
                  ....*....|....*....|....*....|
gi 1877322978  18 LRGKPKMVAIGALMRKLVHWCYGVLKTRTV 47
Cdd:NF033542  316 AKRKGKKVAIVALARKLARILWALLRDGTP 345
 
Name Accession Description Interval E-value
COG3547 COG3547
Transposase [Mobilome: prophages, transposons];
13-51 8.40e-10

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 442768 [Multi-domain]  Cd Length: 349  Bit Score: 51.85  E-value: 8.40e-10
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1877322978  13 YDEMCLRGKPKMVAIGALMRKLVHWCYGVLKTRTVFNDE 51
Cdd:COG3547   306 YQRLLAEGKPKKVAIVALARKLARIIWAVLKDGTPYDPP 344
transpos_IS110 NF033542
IS110 family transposase; Proteins of this family are DEDD (Asp, Glu, Asp, Asp) type ...
 18-47 8.11e-06

IS110 family transposase; Proteins of this family are DEDD (Asp, Glu, Asp, Asp) type transposases, which are encoded by the IS110 family elements.


Pssm-ID: 468073 [Multi-domain]  Cd Length: 345  Bit Score: 40.78  E-value: 8.11e-06
                          10        20        30
                  ....*....|....*....|....*....|
gi 1877322978  18 LRGKPKMVAIGALMRKLVHWCYGVLKTRTV 47
Cdd:NF033542  316 AKRKGKKVAIVALARKLARILWALLRDGTP 345
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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