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Conserved domains on  [gi|1915325524|dbj|BBW63685|]
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protein FlmC (plasmid) [Escherichia coli]

Protein Classification

FlmC family protein( domain architecture ID 13879938)

FlmC family protein is a DUF5431 domain-containing protein similar to Escherichia coli modulator of post-segregation killing protein and F-plasmid maintenance protein C

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5431 pfam17496
Family of unknown function (DUF5431); This is a family of unknown function found in ...
 1-70 5.02e-40

Family of unknown function (DUF5431); This is a family of unknown function found in Enterobacteriaceae.


:

Pssm-ID: 435925  Cd Length: 70  Bit Score: 125.73  E-value: 5.02e-40
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1915325524  1 MSSPHQDSLLPRFAQGEEGHETTTKFPCLVCVDRVSHTVDIHLSDTKIAVRDSLQRRTQGGGGFHGLRIR 70
Cdd:pfam17496  1 MSRQHQDSLLPRVRQGEEGHETTAKRPYLVCINRVLHTVNIHIPDPKIAVRNPAEGRRQGGYGKTGLRIR 70
 
Name Accession Description Interval E-value
DUF5431 pfam17496
Family of unknown function (DUF5431); This is a family of unknown function found in ...
 1-70 5.02e-40

Family of unknown function (DUF5431); This is a family of unknown function found in Enterobacteriaceae.


Pssm-ID: 435925  Cd Length: 70  Bit Score: 125.73  E-value: 5.02e-40
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1915325524  1 MSSPHQDSLLPRFAQGEEGHETTTKFPCLVCVDRVSHTVDIHLSDTKIAVRDSLQRRTQGGGGFHGLRIR 70
Cdd:pfam17496  1 MSRQHQDSLLPRVRQGEEGHETTAKRPYLVCINRVLHTVNIHIPDPKIAVRNPAEGRRQGGYGKTGLRIR 70
PRK13720 PRK13720
modulator of post-segregation killing protein; Provisional
 1-70 6.81e-40

modulator of post-segregation killing protein; Provisional


Pssm-ID: 172262  Cd Length: 70  Bit Score: 125.38  E-value: 6.81e-40
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1915325524  1 MSSPHQDSLLPRFAQGEEGHETTTKFPCLVCVDRVSHTVDIHLSDTKIAVRDSLQRRTQGGGGFHGLRIR 70
Cdd:PRK13720   1 MSSQHQDSLLPRFAQGEEGHETTTKRPCLVCVDRVSHTVDIHLSDTKIAVRDSLQRRIQGGGGFHGLRIR 70
 
Name Accession Description Interval E-value
DUF5431 pfam17496
Family of unknown function (DUF5431); This is a family of unknown function found in ...
 1-70 5.02e-40

Family of unknown function (DUF5431); This is a family of unknown function found in Enterobacteriaceae.


Pssm-ID: 435925  Cd Length: 70  Bit Score: 125.73  E-value: 5.02e-40
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1915325524  1 MSSPHQDSLLPRFAQGEEGHETTTKFPCLVCVDRVSHTVDIHLSDTKIAVRDSLQRRTQGGGGFHGLRIR 70
Cdd:pfam17496  1 MSRQHQDSLLPRVRQGEEGHETTAKRPYLVCINRVLHTVNIHIPDPKIAVRNPAEGRRQGGYGKTGLRIR 70
PRK13720 PRK13720
modulator of post-segregation killing protein; Provisional
 1-70 6.81e-40

modulator of post-segregation killing protein; Provisional


Pssm-ID: 172262  Cd Length: 70  Bit Score: 125.38  E-value: 6.81e-40
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1915325524  1 MSSPHQDSLLPRFAQGEEGHETTTKFPCLVCVDRVSHTVDIHLSDTKIAVRDSLQRRTQGGGGFHGLRIR 70
Cdd:PRK13720   1 MSSQHQDSLLPRFAQGEEGHETTTKRPCLVCVDRVSHTVDIHLSDTKIAVRDSLQRRIQGGGGFHGLRIR 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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