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Conserved domains on  [gi|1828170108|dbj|BCB44159|]
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basal-body rod modification protein FlgD [Vibrio alginolyticus]

Protein Classification

flagellar hook assembly protein FlgD( domain architecture ID 11484414)

flagellar hook assembly protein FlgD may act as a scaffolding protein required for flagellar hook formation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
flgD PRK09619
flagellar hook assembly protein FlgD;
4-227 2.41e-128

flagellar hook assembly protein FlgD;


:

Pssm-ID: 181996 [Multi-domain]  Cd Length: 218  Bit Score: 361.02  E-value: 2.41e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828170108   4 AQYTPLSSDAPVSTKAKENNGIAPNpkdmnsASSLENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSKT 83
Cdd:PRK09619    1 MQINESRNSANVGNQSPAPEGGLPG------AEQLNNQFMTLLVAQIQNQDPLNPADGTEFVSQLAQLSQVQSTENMAKL 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828170108  84 MQQSMILLDNMQVLSTAGLVGQTVYVNSKEFELGEGVQNGKIELAHSSNQVTLVVKDEFGQSTKVPLGAHGKGDVDFSIN 163
Cdd:PRK09619   75 MKSNTVLMDNMQTLATANLVGQQVMVESHEITLGEDPVAGRLTLKHPAPTLTLHITDILGQEKKIDLGKQPAGPVNFTLD 154

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1828170108 164 PEELGLKPGKYSVAVEVQEGQASPNVLMAGTVEQVRIPNTGGAALVNVHGVGNVPFYQITQFGA 227
Cdd:PRK09619  155 PAALGLQPGQYQLSVVSGSGEELIPVEVAGKVNNVRISPQGGAPQLNITGLGEVPYYQITQFGA 218
 
Name Accession Description Interval E-value
flgD PRK09619
flagellar hook assembly protein FlgD;
4-227 2.41e-128

flagellar hook assembly protein FlgD;


Pssm-ID: 181996 [Multi-domain]  Cd Length: 218  Bit Score: 361.02  E-value: 2.41e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828170108   4 AQYTPLSSDAPVSTKAKENNGIAPNpkdmnsASSLENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSKT 83
Cdd:PRK09619    1 MQINESRNSANVGNQSPAPEGGLPG------AEQLNNQFMTLLVAQIQNQDPLNPADGTEFVSQLAQLSQVQSTENMAKL 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828170108  84 MQQSMILLDNMQVLSTAGLVGQTVYVNSKEFELGEGVQNGKIELAHSSNQVTLVVKDEFGQSTKVPLGAHGKGDVDFSIN 163
Cdd:PRK09619   75 MKSNTVLMDNMQTLATANLVGQQVMVESHEITLGEDPVAGRLTLKHPAPTLTLHITDILGQEKKIDLGKQPAGPVNFTLD 154

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1828170108 164 PEELGLKPGKYSVAVEVQEGQASPNVLMAGTVEQVRIPNTGGAALVNVHGVGNVPFYQITQFGA 227
Cdd:PRK09619  155 PAALGLQPGQYQLSVVSGSGEELIPVEVAGKVNNVRISPQGGAPQLNITGLGEVPYYQITQFGA 218
FlgD COG1843
Flagellar hook-capping protein FlgD [Cell motility];
11-227 1.71e-48

Flagellar hook-capping protein FlgD [Cell motility];


Pssm-ID: 441448 [Multi-domain]  Cd Length: 223  Bit Score: 158.63  E-value: 1.71e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828170108  11 SDAPVSTKAKENNGIAPNPKDMNSASSLENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSKTMQQSMIL 90
Cdd:COG1843     2 ATSSSSSVLSSLSTSSTSSSSSSSSSLGKDDFLKLLVAQLQNQDPLNPMDNTEFIAQLAQFSTVEQIENLNTTLESLASS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828170108  91 LDNMQVLSTAGLVGQTVYVNSKEFELGEGVQNGKIELAHSSNQVTLVVKDEFGQSTK-VPLGAHGKGDVDFSINPEEL-- 167
Cdd:COG1843    82 LTSSQALQASSLIGKEVLVEGNTISLDGGSASGGFELPSAADSVTVTITDANGNVVRtIDLGAQSAGVHTFTWDGTDDdg 161

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1828170108 168 -GLKPGKYSVAVEVQEG--QASPNVLMAGTVEQVRIpnTGGAALVNVHGVGNVPFYQITQFGA 227
Cdd:COG1843   162 nALPDGTYTFSVEATDDgePVTATTLVYGKVTSVTL--SGGGPVLNLGGGGSVPLSDVTEIRD 222
FLgD_tudor pfam13861
FlgD Tudor-like domain; This domain has a tudor domain-like beta barrel fold. It is found in ...
 94-223 1.43e-21

FlgD Tudor-like domain; This domain has a tudor domain-like beta barrel fold. It is found in the FlgD protein the flagellar hook capping protein. The structure for this domain shows that it contains a nested Ig-like domain within it. However in some firmicute proteins this inserted domain is absent such as Q67K21.


Pssm-ID: 433533  Cd Length: 136  Bit Score: 86.49  E-value: 1.43e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828170108  94 MQVLSTAGLVGQTVYVNSKEFELGE-GVQNGKIELAHSSNQVTLVVKDEFGQSTK-VPLGAHGKGDVDFSI---NPEELG 168
Cdd:pfam13861   1 SQALQAASLIGKEVLVPGDTISLSAdGGATGGVELPSAADNVTVTIYDSSGQVVRtIDLGAQAAGNVSFTWdgkDSDGNQ 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1828170108 169 LKPGKYSVAVE-VQEGQA-SPNVLMAGTVEQVRIPNTGGAALvNVHGVGNVPFYQIT 223
Cdd:pfam13861  81 LPDGTYTFSVTaTADGTSvAVTTLVYGTVDSVSLGGDGGPLL-NLGLGGTVPLSDVR 136
 
Name Accession Description Interval E-value
flgD PRK09619
flagellar hook assembly protein FlgD;
4-227 2.41e-128

flagellar hook assembly protein FlgD;


Pssm-ID: 181996 [Multi-domain]  Cd Length: 218  Bit Score: 361.02  E-value: 2.41e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828170108   4 AQYTPLSSDAPVSTKAKENNGIAPNpkdmnsASSLENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSKT 83
Cdd:PRK09619    1 MQINESRNSANVGNQSPAPEGGLPG------AEQLNNQFMTLLVAQIQNQDPLNPADGTEFVSQLAQLSQVQSTENMAKL 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828170108  84 MQQSMILLDNMQVLSTAGLVGQTVYVNSKEFELGEGVQNGKIELAHSSNQVTLVVKDEFGQSTKVPLGAHGKGDVDFSIN 163
Cdd:PRK09619   75 MKSNTVLMDNMQTLATANLVGQQVMVESHEITLGEDPVAGRLTLKHPAPTLTLHITDILGQEKKIDLGKQPAGPVNFTLD 154

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1828170108 164 PEELGLKPGKYSVAVEVQEGQASPNVLMAGTVEQVRIPNTGGAALVNVHGVGNVPFYQITQFGA 227
Cdd:PRK09619  155 PAALGLQPGQYQLSVVSGSGEELIPVEVAGKVNNVRISPQGGAPQLNITGLGEVPYYQITQFGA 218
FlgD COG1843
Flagellar hook-capping protein FlgD [Cell motility];
11-227 1.71e-48

Flagellar hook-capping protein FlgD [Cell motility];


Pssm-ID: 441448 [Multi-domain]  Cd Length: 223  Bit Score: 158.63  E-value: 1.71e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828170108  11 SDAPVSTKAKENNGIAPNPKDMNSASSLENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSKTMQQSMIL 90
Cdd:COG1843     2 ATSSSSSVLSSLSTSSTSSSSSSSSSLGKDDFLKLLVAQLQNQDPLNPMDNTEFIAQLAQFSTVEQIENLNTTLESLASS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828170108  91 LDNMQVLSTAGLVGQTVYVNSKEFELGEGVQNGKIELAHSSNQVTLVVKDEFGQSTK-VPLGAHGKGDVDFSINPEEL-- 167
Cdd:COG1843    82 LTSSQALQASSLIGKEVLVEGNTISLDGGSASGGFELPSAADSVTVTITDANGNVVRtIDLGAQSAGVHTFTWDGTDDdg 161

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1828170108 168 -GLKPGKYSVAVEVQEG--QASPNVLMAGTVEQVRIpnTGGAALVNVHGVGNVPFYQITQFGA 227
Cdd:COG1843   162 nALPDGTYTFSVEATDDgePVTATTLVYGKVTSVTL--SGGGPVLNLGGGGSVPLSDVTEIRD 222
flgD PRK06655
flagellar hook assembly protein FlgD;
22-226 2.28e-40

flagellar hook assembly protein FlgD;


Pssm-ID: 235847 [Multi-domain]  Cd Length: 225  Bit Score: 137.77  E-value: 2.28e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828170108  22 NNGIAPNPKDMNS---ASSLENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSKTMQQSMILLDNMQVLS 98
Cdd:PRK06655   12 TSGLSTTSSSSSSkkgAADLQDDFLTLLVAQLKNQDPLNPMDNSQMTSQLAQFSTVSGIEKLNTTLGSLSSQMTSSQALQ 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828170108  99 TAGLVGQTVYVNSKEFELGEGVQ-NGKIELAHSSNQVTLVVKDEFGQSTK-VPLGAHGKGDVDFS---INPEELGLKPGK 173
Cdd:PRK06655   92 ASSLVGRGVLVPGDTVLVGTGGTtPFGVELPSAADNVTVTITDSAGQVVRtIDLGAQSAGVVSFTwdgTDTDGNALPDGN 171

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1828170108 174 YSVAVE--VQEGQASPNVLMAGTVEQVRIPNTGGAALVNVHGVGnVPFYQITQFG 226
Cdd:PRK06655  172 YTIKASasVGGKQLVAQTLTYANVQSVSLGANGGGLDLNLAGTG-VTLSDVRQIL 225
FLgD_tudor pfam13861
FlgD Tudor-like domain; This domain has a tudor domain-like beta barrel fold. It is found in ...
 94-223 1.43e-21

FlgD Tudor-like domain; This domain has a tudor domain-like beta barrel fold. It is found in the FlgD protein the flagellar hook capping protein. The structure for this domain shows that it contains a nested Ig-like domain within it. However in some firmicute proteins this inserted domain is absent such as Q67K21.


Pssm-ID: 433533  Cd Length: 136  Bit Score: 86.49  E-value: 1.43e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828170108  94 MQVLSTAGLVGQTVYVNSKEFELGE-GVQNGKIELAHSSNQVTLVVKDEFGQSTK-VPLGAHGKGDVDFSI---NPEELG 168
Cdd:pfam13861   1 SQALQAASLIGKEVLVPGDTISLSAdGGATGGVELPSAADNVTVTIYDSSGQVVRtIDLGAQAAGNVSFTWdgkDSDGNQ 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1828170108 169 LKPGKYSVAVE-VQEGQA-SPNVLMAGTVEQVRIPNTGGAALvNVHGVGNVPFYQIT 223
Cdd:pfam13861  81 LPDGTYTFSVTaTADGTSvAVTTLVYGTVDSVSLGGDGGPLL-NLGLGGTVPLSDVR 136
FlgD pfam03963
Flagellar hook capping protein - N-terminal region; FlgD is known to be absolutely required ...
 13-86 1.29e-16

Flagellar hook capping protein - N-terminal region; FlgD is known to be absolutely required for hook assembly, yet it has not been detected in the mature flagellum. It appears to act as a hook-capping protein to enable assembly of hook protein subunits. FlgD regulates the assembly of the hook cap structure to prevent leakage of hook monomers into the medium and hook monomer polymerization and also plays a role in determination of the correct hook length, with the help of the FliK protein. This family represents the N-terminal conserved region of FlgD. A recent crystal structure showed that this region was likely to be flexible and was cleaved off during crystallization.


Pssm-ID: 427619 [Multi-domain]  Cd Length: 75  Bit Score: 71.51  E-value: 1.29e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1828170108  13 APVSTKAKENNGIAPNPKDMNSASSLENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSKTMQQ 86
Cdd:pfam03963   2 TSTNSSSTTSTSSSSSTSAKSSSTLGKDDFLKLLTTQLQNQDPLNPMDNTQFTSQLAQFSSVEQIEKLNKTLDS 75
flgD PRK12634
flagellar basal body rod modification protein; Reviewed
 24-218 4.26e-16

flagellar basal body rod modification protein; Reviewed


Pssm-ID: 183639 [Multi-domain]  Cd Length: 221  Bit Score: 74.20  E-value: 4.26e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828170108  24 GIAPNPKDMNSASSL-ENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSKTMQQSMILLDNMQVLSTAGL 102
Cdd:PRK12634   13 GLSTSSKTAKKEEALgQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKVSNFSDSMSSDQVLKGAAL 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828170108 103 VGQTVYVNSKEFELGEGVQNGKIELAHSSNQVTLVVKDEFGQSTK-VPLGAHGKGDVDFSINPEELG---LKPGKYSVAV 178
Cdd:PRK12634   93 VGHNVLVPSAQVAIDATGSAKGVVAATSAGFVNFEITDANGAFVKqISVPASAAGEVSFAWDGTDANgnrMAAGKYGVTA 172

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1828170108 179 EVQEGQASPNVL---MAGTVEQVRIPNTGgaALVNVHGVGNVP 218
Cdd:PRK12634  173 TQTDTAGSKSKLstyVQAPVDSVTIGSDG--LYLNLTGLGTSP 213
flgD PRK12633
flagellar basal body rod modification protein; Provisional
 33-204 9.46e-16

flagellar basal body rod modification protein; Provisional


Pssm-ID: 183638 [Multi-domain]  Cd Length: 230  Bit Score: 73.47  E-value: 9.46e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828170108  33 NSASSLENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSKTMQQSMILLDNMQVLSTAGLVGQTVYVNSK 112
Cdd:PRK12633   22 SAAQGIQDQFLTLLVTQLRNQDPLNPMENAELTSQLAQISTVEGINNLKNTMLAISGQIDVSQSMDAVSMIGKGVLMPGD 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828170108 113 EFELGEGVQNGK--------IELAHSSNQVTLVVKDEFGQSTK-VPLGAHGKGDVDFSINPEELG---LKPGKYSVAVEV 180
Cdd:PRK12633  102 KVSLGTDPNDPAqrgatpfgIDLQGDATKVTVKVLDPSGAVVRtMELGDLKTGVHTLQWDGNNDGgqpLADGKYSITVSA 181

                         170       180
                  ....*....|....*....|....*..
gi 1828170108 181 QEGQASP---NVLMAGTVEQVRIPNTG 204
Cdd:PRK12633  182 SDADAKPvkaEALTYGQVKSVAYSTNG 208
flgD PRK06009
flagellar hook assembly protein FlgD;
11-107 1.36e-14

flagellar hook assembly protein FlgD;


Pssm-ID: 235670 [Multi-domain]  Cd Length: 140  Bit Score: 68.20  E-value: 1.36e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828170108  11 SDAPVSTKAKENNGIAPNPKDMNSASSLENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSKTMQQsmiL 90
Cdd:PRK06009    7 TSATSSSTTSSTSTASNSTSAANKASVNYDSFLQLLIAQMKNQDPTDPMDATQYVSQLATFSQVEQSIQTNSKLDT---L 83

                          90
                  ....*....|....*..
gi 1828170108  91 LDNMQVLSTAGLVGQTV 107
Cdd:PRK06009   84 LASSSLTQAEGLIGRTV 100
flgD PRK09618
flagellar hook assembly protein FlgD;
24-140 1.43e-14

flagellar hook assembly protein FlgD;


Pssm-ID: 236594 [Multi-domain]  Cd Length: 142  Bit Score: 68.10  E-value: 1.43e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828170108  24 GIAPNPKDMNSASSL-ENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSKTMQQSMILLDnmQVLSTAGL 102
Cdd:PRK09618   13 ANSKKAERRTGNQNLgKDDFLKLLITQLQNQDPTNPMEDKEFIAQMAQFSSLEQMTNMNKSMEKLVSSSD--GLTKYSEL 90

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1828170108 103 VGQTVYVNSKEFELGEG-VQNGKielaHSSNQVTLVVKD 140
Cdd:PRK09618   91 IGKEVEWEGEDGEIVSGtVTSVK----QKDGDYPLVLDN 125
flgD PRK12813
flagellar basal body rod modification protein; Reviewed
 28-179 3.62e-11

flagellar basal body rod modification protein; Reviewed


Pssm-ID: 237214 [Multi-domain]  Cd Length: 223  Bit Score: 60.50  E-value: 3.62e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828170108  28 NPKDMNSASSLENeFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQS---TENMSKTMQQSMILLDNMQVlstAGLVG 104
Cdd:PRK12813   22 ASAASALTSDFET-FLRMLTTQLQNQDPLNPMDSSDYAAQLATFSGVEQqvkTNDLLTGLGASLGVMGLSQL---AGWIG 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828170108 105 QTVYVNSKEFELGEGVQNgKIELAHSSNQVTLVVKDEFG---QSTKVPLGA-----HGKGDvdfSINPeelgLKPGKYSV 176
Cdd:PRK12813   98 REARAEAPVWFDGTPVTI-SPNPAADADKAELVVRDAAGaevARETVPVGAgpvewAGEDA---DGNP----LPNGAYSF 169


                  ...
gi 1828170108 177 AVE 179
Cdd:PRK12813  170 VVE 172
flgD PRK11911
flagellar basal body rod modification protein; Provisional
 39-140 2.15e-06

flagellar basal body rod modification protein; Provisional


Pssm-ID: 138812 [Multi-domain]  Cd Length: 140  Bit Score: 45.98  E-value: 2.15e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828170108  39 ENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSKTMQQSMILLDNMQVLSTAGLVGQTVyvnsKEFELGE 118
Cdd:PRK11911   28 KDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVANMTTAVDKLSEQAQNSALQSAVNFIGKDI----KGVSLNG 103

                          90       100
                  ....*....|....*....|...
gi 1828170108 119 GVQNGKIE-LAHSSNQVTLVVKD 140
Cdd:PRK11911  104 EVISGKVEsVQQTTNGVMLKLKD 126
flgD PRK12812
flagellar basal body rod modification protein; Reviewed
 33-134 2.66e-06

flagellar basal body rod modification protein; Reviewed


Pssm-ID: 139245 [Multi-domain]  Cd Length: 259  Bit Score: 46.79  E-value: 2.66e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828170108  33 NSASSLENE-FISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSKTMQQSMILLDNMQVLSTAGLVGQTVYVNS 111
Cdd:PRK12812   39 NPNSQLDKDaFLKLLLIELQHQDPTDPMDSDKMLTQTSQLAALEMQENTNTTMQKLVEQMQSSMSTSALSALGKMATVSD 118

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1828170108 112 KEFELG-------------EGVQNGKIELAHSSNQV 134
Cdd:PRK12812  119 NAVKLTgadelialklyfpEDSDEGTLEIYDSNNKL 154
flgD PRK05842
flagellar hook assembly protein FlgD;
39-86 3.27e-05

flagellar hook assembly protein FlgD;


Pssm-ID: 235621 [Multi-domain]  Cd Length: 295  Bit Score: 43.83  E-value: 3.27e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1828170108  39 ENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSKTMQQ 86
Cdd:PRK05842   30 KNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQE 77
FlgD_ig pfam13860
FlgD Ig-like domain; This domains has an immunoglobulin like beta sandwich fold. It is found ...
 112-179 4.48e-05

FlgD Ig-like domain; This domains has an immunoglobulin like beta sandwich fold. It is found in the FlgD protein the flagellar hook capping protein. THe structure for this domain shows that it is inserted within a TUDOR like beta barrel domain.


Pssm-ID: 433532 [Multi-domain]  Cd Length: 78  Bit Score: 40.79  E-value: 4.48e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1828170108 112 KEFELGEGVQNGKIELAHSSN--QVTLVVKDEFGQS-TKVPLGAHGKGDVDFSI---NPEELGLKPGKYSVAVE 179
Cdd:pfam13860   1 NTISLTDGGAPGSVELTLPSPadSVTVTIYDAAGQLvRTIDLGAQSAGDVSFTWdgtDDDGNKLADGTYTFSVS 74
flgD PRK06792
flagellar basal body rod modification protein; Validated
 13-82 2.92e-04

flagellar basal body rod modification protein; Validated


Pssm-ID: 180695 [Multi-domain]  Cd Length: 190  Bit Score: 40.38  E-value: 2.92e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1828170108  13 APVSTKAKENNGIAPNPKDMNSASSLE---------NEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSK 82
Cdd:PRK06792   18 AGAQTKNASVTGAQSTAQQANGVSASTqktpgimdkDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTK 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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