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Conserved domains on  [gi|1828173814|dbj|BCB47864|]
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ribosome maturation factor RimP [Vibrio alginolyticus]

Protein Classification

ribosome maturation factor RimP( domain architecture ID 10011230)

ribosome maturation factor rimp is important for maturation of 30S ribosome subunits

Gene Symbol:  rimP
Gene Ontology:  GO:0000028|GO:0042274|GO:0006412
PubMed:  19150615

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK00092 PRK00092
ribosome maturation protein RimP; Reviewed
 1-151 3.43e-83

ribosome maturation protein RimP; Reviewed


:

Pssm-ID: 234627 [Multi-domain]  Cd Length: 154  Bit Score: 241.25  E-value: 3.43e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828173814   1 MTGLERQLTEMLEAPVEASGYELVGLEFIRAGAHSTLRIYIDHENGINVDDCAEVSHQVSAVLDVEDPISVAYSLEVSSP 80
Cdd:PRK00092    2 MSPLEEQLTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDVEDPIPGAYTLEVSSP 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1828173814  81 GLERPLFKAAHYEQFIGHEVSIVLKMAVANRRKWKGIIHGVDGETVTITVDGQ--QEEFALSNISKANLIPKF 151
Cdd:PRK00092   82 GLDRPLKKARDFRRFIGREVKVKLYEPIDGRKKFQGILLAVDGETVTLEVEGKekEVEIPLDNIAKARLVVEF 154
 
Name Accession Description Interval E-value
PRK00092 PRK00092
ribosome maturation protein RimP; Reviewed
 1-151 3.43e-83

ribosome maturation protein RimP; Reviewed


Pssm-ID: 234627 [Multi-domain]  Cd Length: 154  Bit Score: 241.25  E-value: 3.43e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828173814   1 MTGLERQLTEMLEAPVEASGYELVGLEFIRAGAHSTLRIYIDHENGINVDDCAEVSHQVSAVLDVEDPISVAYSLEVSSP 80
Cdd:PRK00092    2 MSPLEEQLTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDVEDPIPGAYTLEVSSP 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1828173814  81 GLERPLFKAAHYEQFIGHEVSIVLKMAVANRRKWKGIIHGVDGETVTITVDGQ--QEEFALSNISKANLIPKF 151
Cdd:PRK00092   82 GLDRPLKKARDFRRFIGREVKVKLYEPIDGRKKFQGILLAVDGETVTLEVEGKekEVEIPLDNIAKARLVVEF 154
RimP COG0779
Ribosome maturation factor RimP [Translation, ribosomal structure and biogenesis];
1-151 4.60e-78

Ribosome maturation factor RimP [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440542 [Multi-domain]  Cd Length: 151  Bit Score: 228.08  E-value: 4.60e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828173814   1 MTGLERQLTEMLEAPVEASGYELVGLEFIRAGAHSTLRIYIDHENGINVDDCAEVSHQVSAVLDVEDPISVAYSLEVSSP 80
Cdd:COG0779     1 MSGLEERLEELLEPVLEELGLELVDVEVVKEGKRWVLRVYIDKDGGVTLDDCAAVSRALSAVLDVEDPIPGAYTLEVSSP 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1828173814  81 GLERPLFKAAHYEQFIGHEVSIVLKMAVANRRKWKGIIHGVDGETVTITVDGQQEEFALSNISKANLIPKF 151
Cdd:COG0779    81 GLDRPLKKPRDFERFIGRLVKVKLREPIDGRKKFTGRLLGVDDDGVTLEVDGKEVEIPLDDIAKARLVIEF 151
RimP_N pfam02576
RimP N-terminal domain; This entry represents the N-terminal domain of the ribosome maturation ...
 11-83 7.40e-35

RimP N-terminal domain; This entry represents the N-terminal domain of the ribosome maturation factor RimP (also known as yhbC). RimP facilitates the maturation of the 30S ribosomal subunit. The N-terminal domain contains two alpha-helices and a three-stranded beta-sheet. It is suggested that the N-terminal domain of SP14.3 (RimP orthologue) could function as a protein module that binds to other proteins, especially those that contain highly positively charged surfaces..


Pssm-ID: 460600  Cd Length: 73  Bit Score: 116.16  E-value: 7.40e-35
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1828173814  11 MLEAPVEASGYELVGLEFIRAGAHSTLRIYIDHENGINVDDCAEVSHQVSAVLDVEDPISVAYSLEVSSPGLE 83
Cdd:pfam02576   1 LIEPVVESLGFELVDVEFVKEGGGWTLRIYIDKDGGVTIDDCAKVSRAISAVLDVEDPISGEYTLEVSSPGLD 73
YlxS_C cd01734
Bacillus subtilis YxlS-like, C-terminal domain; YxlS is a Bacillus subtilis gene of unknown ...
 81-151 2.05e-29

Bacillus subtilis YxlS-like, C-terminal domain; YxlS is a Bacillus subtilis gene of unknown function with two domains that each have an alpha/beta fold. The N-terminal domain is composed of two alpha-helices and a three-stranded beta-sheet, while the C-terminal domain is composed of one alpha-helix and a five-stranded beta-sheet. This CD represents the C-terminal domain which has a fold similar to the Sm fold of proteins like Sm-D3.


Pssm-ID: 212481  Cd Length: 72  Bit Score: 102.14  E-value: 2.05e-29
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1828173814  81 GLERPLFKAAHYEQFIGHEVSIVLKMAVANRRKWKGIIHGVDGETVTITVDGQQE-EFALSNISKANLIPKF 151
Cdd:cd01734     1 GLDRPLKKPEDFERFIGKEVKVKLKEPIDGRKKFTGELLGVDDDTVTLEVDDGKEvEIPFDNIAKARLVPEF 72
 
Name Accession Description Interval E-value
PRK00092 PRK00092
ribosome maturation protein RimP; Reviewed
 1-151 3.43e-83

ribosome maturation protein RimP; Reviewed


Pssm-ID: 234627 [Multi-domain]  Cd Length: 154  Bit Score: 241.25  E-value: 3.43e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828173814   1 MTGLERQLTEMLEAPVEASGYELVGLEFIRAGAHSTLRIYIDHENGINVDDCAEVSHQVSAVLDVEDPISVAYSLEVSSP 80
Cdd:PRK00092    2 MSPLEEQLTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDVEDPIPGAYTLEVSSP 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1828173814  81 GLERPLFKAAHYEQFIGHEVSIVLKMAVANRRKWKGIIHGVDGETVTITVDGQ--QEEFALSNISKANLIPKF 151
Cdd:PRK00092   82 GLDRPLKKARDFRRFIGREVKVKLYEPIDGRKKFQGILLAVDGETVTLEVEGKekEVEIPLDNIAKARLVVEF 154
PRK14640 PRK14640
hypothetical protein; Provisional
 1-151 3.89e-82

hypothetical protein; Provisional


Pssm-ID: 173103 [Multi-domain]  Cd Length: 152  Bit Score: 238.37  E-value: 3.89e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828173814   1 MTGLERQLTEMLEAPVEASGYELVGLEFIRAGAHSTLRIYIDHENGINVDDCAEVSHQVSAVLDVEDPISVAYSLEVSSP 80
Cdd:PRK14640    1 MATLEQRLTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDGENGVSVENCAEVSHQVGAIMDVEDPITEEYYLEVSSP 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1828173814  81 GLERPLFKAAHYEQFIGHEVSIVLKMAVANRRKWKGIIHGVDGETVTITVDGQQEEFALSNISKANLIPKF 151
Cdd:PRK14640   81 GLDRPLFKVAQFEKYVGQEAAVTLRMATNNRRKFKGVIKAVQGDMITLTVDGKDEVLAFTNIQKANIVPNF 151
RimP COG0779
Ribosome maturation factor RimP [Translation, ribosomal structure and biogenesis];
1-151 4.60e-78

Ribosome maturation factor RimP [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440542 [Multi-domain]  Cd Length: 151  Bit Score: 228.08  E-value: 4.60e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828173814   1 MTGLERQLTEMLEAPVEASGYELVGLEFIRAGAHSTLRIYIDHENGINVDDCAEVSHQVSAVLDVEDPISVAYSLEVSSP 80
Cdd:COG0779     1 MSGLEERLEELLEPVLEELGLELVDVEVVKEGKRWVLRVYIDKDGGVTLDDCAAVSRALSAVLDVEDPIPGAYTLEVSSP 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1828173814  81 GLERPLFKAAHYEQFIGHEVSIVLKMAVANRRKWKGIIHGVDGETVTITVDGQQEEFALSNISKANLIPKF 151
Cdd:COG0779    81 GLDRPLKKPRDFERFIGRLVKVKLREPIDGRKKFTGRLLGVDDDGVTLEVDGKEVEIPLDDIAKARLVIEF 151
PRK14631 PRK14631
ribosome maturation factor RimP;
7-148 2.26e-40

ribosome maturation factor RimP;


Pssm-ID: 237772 [Multi-domain]  Cd Length: 174  Bit Score: 133.48  E-value: 2.26e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828173814   7 QLTEMLEAPVEASGYELVGLEFIRAGAHSTLRIYID------------------HENGINVDDCAEVSHQVSAVLDVEDP 68
Cdd:PRK14631    9 ALTDIIAPAVAACGVDLWGIEFLPQGKRSLLRIYIDrlveenaepvinedgeveQGRGIGVEDCVRVTQQVGAMLDVHDP 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828173814  69 ISVAYSLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVANRRKWKGIIHGVDGETVTITV---DGQQEEFALSNISKA 145
Cdd:PRK14631   89 ISGEYALEVSSPGWDRPFFQLEQLQGYIGQQVALRLIAAVENRRKFQAKLLAVDLENEEIQVeveGKHVLDIDSNNIDKA 168


                  ...
gi 1828173814 146 NLI 148
Cdd:PRK14631  169 NLI 171
PRK14647 PRK14647
ribosome maturation factor RimP;
7-147 1.73e-39

ribosome maturation factor RimP;


Pssm-ID: 173110 [Multi-domain]  Cd Length: 159  Bit Score: 130.64  E-value: 1.73e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828173814   7 QLTEMLEAPVEASGYELVGLEFIRAGAHSTLRIYIDHENGINVDDCAEVSHQVSAVLDVEDPISVAYSLEVSSPGLERPL 86
Cdd:PRK14647    9 RVTELAEQVLSSLGLELVELEYKREGREMVLRLFIDKEGGVNLDDCAEVSRELSEILDVEDFIPERYTLEVSSPGLDRPL 88

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1828173814  87 FKAAHYEQFIGHEVSI----VLKMAVANRRK-WKGIIHGVDGETVTITV-DGQQEEFALSNISKANL 147
Cdd:PRK14647   89 KKEADYERYAGRLVKVrtfeLLADEAGNKRKtFLGELEGLADGVVTIALkEGQQARIPLDKIAKANL 155
RimP_N pfam02576
RimP N-terminal domain; This entry represents the N-terminal domain of the ribosome maturation ...
 11-83 7.40e-35

RimP N-terminal domain; This entry represents the N-terminal domain of the ribosome maturation factor RimP (also known as yhbC). RimP facilitates the maturation of the 30S ribosomal subunit. The N-terminal domain contains two alpha-helices and a three-stranded beta-sheet. It is suggested that the N-terminal domain of SP14.3 (RimP orthologue) could function as a protein module that binds to other proteins, especially those that contain highly positively charged surfaces..


Pssm-ID: 460600  Cd Length: 73  Bit Score: 116.16  E-value: 7.40e-35
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1828173814  11 MLEAPVEASGYELVGLEFIRAGAHSTLRIYIDHENGINVDDCAEVSHQVSAVLDVEDPISVAYSLEVSSPGLE 83
Cdd:pfam02576   1 LIEPVVESLGFELVDVEFVKEGGGWTLRIYIDKDGGVTIDDCAKVSRAISAVLDVEDPISGEYTLEVSSPGLD 73
PRK14636 PRK14636
ribosome maturation protein RimP;
1-148 2.73e-33

ribosome maturation protein RimP;


Pssm-ID: 237773 [Multi-domain]  Cd Length: 176  Bit Score: 115.27  E-value: 2.73e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828173814   1 MTGLERqLTEMLEAPVEASGYELVGLEFIRAGAHSTLRIYIDHENG--INVDDCAEVSHQVSAVLDVEDPISVAYSLEVS 78
Cdd:PRK14636    1 MADIAA-LTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTrqLVIEDCAALSRRLSDVFDELDPIEDAYRLEVS 79

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1828173814  79 SPGLERPLFKAAHYEQFIGHEVSIVLKMAVANRRKWKGIIHGVDGETVTITV-DGQQEEFALSNISKANLI 148
Cdd:PRK14636   80 SPGIDRPLTRPKDFADWAGHEARIALSEPLDGRKQFRGELKGIDGDTVTIADnKAGEVILPFAAIESAKLI 150
PRK14633 PRK14633
ribosome maturation factor RimP;
8-151 1.96e-30

ribosome maturation factor RimP;


Pssm-ID: 173096 [Multi-domain]  Cd Length: 150  Bit Score: 107.36  E-value: 1.96e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828173814   8 LTEMLEAPVEASGYELVGLEFIRAGaHSTLRIYIDHENGINVDDCAEVSHQVSAVLDVEDPISVAYSLEVSSPGLERPLF 87
Cdd:PRK14633    6 LYEIVEPITADLGYILWGIEVVGSG-KLTIRIFIDHENGVSVDDCQIVSKEISAVFDVEDPVSGKYILEVSSPGMNRQIF 84

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1828173814  88 KAAHYEQFIGHEVSIVLKMAVANRRKWKGIIHGVDGETVTITV-DGQQEEFALSNISKANLIPKF 151
Cdd:PRK14633   85 NIIQAQALVGFNVKAVTLAPVGSQTKFKGVLERVEGNNVILNLeDGKEISFDFDELKKLRVSPDF 149
YlxS_C cd01734
Bacillus subtilis YxlS-like, C-terminal domain; YxlS is a Bacillus subtilis gene of unknown ...
 81-151 2.05e-29

Bacillus subtilis YxlS-like, C-terminal domain; YxlS is a Bacillus subtilis gene of unknown function with two domains that each have an alpha/beta fold. The N-terminal domain is composed of two alpha-helices and a three-stranded beta-sheet, while the C-terminal domain is composed of one alpha-helix and a five-stranded beta-sheet. This CD represents the C-terminal domain which has a fold similar to the Sm fold of proteins like Sm-D3.


Pssm-ID: 212481  Cd Length: 72  Bit Score: 102.14  E-value: 2.05e-29
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1828173814  81 GLERPLFKAAHYEQFIGHEVSIVLKMAVANRRKWKGIIHGVDGETVTITVDGQQE-EFALSNISKANLIPKF 151
Cdd:cd01734     1 GLDRPLKKPEDFERFIGKEVKVKLKEPIDGRKKFTGELLGVDDDTVTLEVDDGKEvEIPFDNIAKARLVPEF 72
PRK14639 PRK14639
ribosome maturation factor RimP;
12-145 4.27e-27

ribosome maturation factor RimP;


Pssm-ID: 173102 [Multi-domain]  Cd Length: 140  Bit Score: 98.35  E-value: 4.27e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828173814  12 LEAPVEASGYELVGLEFIRAGAHSTLRIYIDHENGINVDDCAEVSHQVSAVLDVEDPISVAYSLEVSSPGLERPLFKAAH 91
Cdd:PRK14639    3 LEALCKECGVSFYDDELVSENGRKIYRVYITKEGGVNLDDCERLSELLSPIFDVEPPVSGEYFLEVSSPGLERKLSKIEH 82

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1828173814  92 YEQFIGHEVSIVLKmavaNRRKWKGIIHGVDGETVTITVDGQQEEFAL--SNISKA 145
Cdd:PRK14639   83 FAKSIGELVKITTN----EKEKFEGKIVSVDDENITLENLENKEKTTInfNDIKKA 134
PRK14645 PRK14645
ribosome maturation factor RimP;
7-147 3.91e-24

ribosome maturation factor RimP;


Pssm-ID: 184780 [Multi-domain]  Cd Length: 154  Bit Score: 91.37  E-value: 3.91e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828173814   7 QLTEMLEAPVEASGYELVGLEFIRAGAHSTLRIYIDH--ENGINVDDCAEVSHQVSAVLDVEDPISVAYSLEVSSPGLER 84
Cdd:PRK14645   10 DLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRkdEQPVTVEDLERASRALEAELDRLDPIEGEYRLEVESPGPKR 89

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1828173814  85 PLFKAAHYEQFIGhevsivLKMAV-ANRRKWKGIIHGVDGETVTITVDGQQEEFALSNIsKANL 147
Cdd:PRK14645   90 PLFTARHFERFAG------LKAKVrGPGENFTGRIKAVSGDQVTFDVGGEDRTLRIGTF-QANL 146
PRK14632 PRK14632
ribosome maturation factor RimP;
17-151 6.06e-24

ribosome maturation factor RimP;


Pssm-ID: 173095 [Multi-domain]  Cd Length: 172  Bit Score: 91.28  E-value: 6.06e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828173814  17 EASGYELVGLEFIRAGaHSTLRIYIDHENGINVDDCAEVSHQVSAVLDVEDPISVAYSLEVSSPGLERPLFKAAHYEQFI 96
Cdd:PRK14632   19 ASLGLELWGIELSYGG-RTVVRLFVDGPEGVTIDQCAEVSRHVGLALEVEDVISSAYVLEVSSPGLERPFFRAEQMSPYV 97

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1828173814  97 GHEVSIVLKMA---VANRRKWKGIIHGVDGETVTITVDGQQE--------EFALSNISKANLIPKF 151
Cdd:PRK14632   98 GRQIELTLIDPtpeWPGRRKFRGELLAVEGDTVVLRPEGAPApeaeeavlRTSWQGVRKANLIHVF 163
DUF150_C pfam17384
RimP C-terminal SH3 domain; This family represents the C-terminal domain from RimP.
 86-151 1.42e-21

RimP C-terminal SH3 domain; This family represents the C-terminal domain from RimP.


Pssm-ID: 465408  Cd Length: 67  Bit Score: 81.90  E-value: 1.42e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1828173814  86 LFKAAHYEQFIGHEVSIVLKMAVANRRKWKGIIHGVDGETVTITVDGQQE-EFALSNISKANLIPKF 151
Cdd:pfam17384   1 LFTAEHFARFIGELVKVKLKLPIDGRKKFQGKIVAVDGETITLEVDGKTEvTIPFDDIDKARLVPEF 67
PRK14638 PRK14638
ribosome maturation factor RimP;
17-151 1.03e-18

ribosome maturation factor RimP;


Pssm-ID: 184777 [Multi-domain]  Cd Length: 150  Bit Score: 77.21  E-value: 1.03e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828173814  17 EASGYELVGLEFIRAGAHSTLRIYIDH-ENGINVDDCAEVSHQVSAVLDVEDPISVAYSLEVSSPGLERPLFKAAHYEQF 95
Cdd:PRK14638   19 EEQGLEIFDVQYRRESRGWVLRIIIDNpVGYVSVRDCELFSREIERFLDREDLIEHSYTLEVSSPGLDRPLRGPKDYVRF 98

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1828173814  96 IGHEVSIVLKmavaNRRKWKGIIHGVDGETVTITVDGQQEEFALSNISKANLIPKF 151
Cdd:PRK14638   99 TGKLAKIVTK----DGKTFIGRIESFVDGTITISDEKEKYEINIDDVKRANLEVEF 150
PRK14642 PRK14642
ribosome maturation factor RimP;
8-116 1.57e-17

ribosome maturation factor RimP;


Pssm-ID: 237775 [Multi-domain]  Cd Length: 197  Bit Score: 75.28  E-value: 1.57e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828173814   8 LTEMLEAPVEASGYELVGLEFIRAGahsTLRIYID-------------HENGINVDDCAEVSHQVSAVLDVEdpiSVAYS 74
Cdd:PRK14642    3 LQQIVEQTVTGLGYDLVEIERSAGG---LLRVTIDlpwvpptegapvgPEQFVTVEDCEKVTRQLQFALEVD---GVDYK 76

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1828173814  75 -LEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAV---------ANRRKWKG 116
Cdd:PRK14642   77 rLEVSSPGIDRPLRHEQDFERFAGEVIDITLKAPIgaaaggqvsANRKKFRG 128
PRK14637 PRK14637
ribosome maturation factor RimP;
10-149 4.63e-16

ribosome maturation factor RimP;


Pssm-ID: 237774 [Multi-domain]  Cd Length: 151  Bit Score: 70.28  E-value: 4.63e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828173814  10 EMLEAPVEASGYELVGLEFIRAGAHSTLRIYIDHENGINVDDCAEVSH----QVSAVLDVEDpisvaYSLEVSSPGLERP 85
Cdd:PRK14637   12 SECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYSAGGVGLDDCARVHRilvpRLEALGGVRD-----VFLEVSSPGIERV 86

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1828173814  86 LFKAAHYEQFIGHEVSIVLKmavaNRRKWK-GIIHGVDGETVTITVDGQQEEFALSNISKANLIP 149
Cdd:PRK14637   87 IKNAAEFSIFVGETVKVWFE----CTGQWQvGTIAEADETCLVLTSDGVPVTIPYVQITKAQLHP 147
PRK02001 PRK02001
ribosome assembly cofactor RimP;
4-130 6.58e-14

ribosome assembly cofactor RimP;


Pssm-ID: 179358 [Multi-domain]  Cd Length: 152  Bit Score: 64.61  E-value: 6.58e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828173814   4 LERQLTEML-EAPVEASGYELVGLEFiraGAHSTLRIYIDHENGINVDDCAEVSHQVSAVLDVEDpisVAYSLEVSSPGL 82
Cdd:PRK02001    2 IKKKVVELLvEELLEGPELFLVDLTI---SPDNKIVVEIDGDEGVWIEDCVELSRAIEHNLDREE---EDFELEVGSAGL 75

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1828173814  83 ERPLFKAAHYEQFIGHEVSIVLKmavaNRRKWKGIIHGVDGETVTITV 130
Cdd:PRK02001   76 TSPLKVPRQYKKNIGRELEVLTK----NGKKIEGELKSADENDITLEV 119
PRK14634 PRK14634
ribosome maturation factor RimP;
8-133 4.09e-11

ribosome maturation factor RimP;


Pssm-ID: 173097 [Multi-domain]  Cd Length: 155  Bit Score: 57.50  E-value: 4.09e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828173814   8 LTEMLEAPVEASGYELVGLEFIRAGAHSTLRIYIDHENG--INVDDCAEVSHQVSAVLDVEDPISVAYSLEVSSPGLERP 85
Cdd:PRK14634    9 LETLASATAADKGFELCGIQVLTHLQPMTLQVQIRRSSGsdVSLDDCAGFSGPMGEALEASQLLTEAYVLEISSPGIGDQ 88

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1828173814  86 LFKAAHYEQFIGHEVSIVLKMAVANRRKWKGIIHGVDGETVTITVDGQ 133
Cdd:PRK14634   89 LSSDRDFQTFRGFPVEVSHRDDDGSEQRLEGLLLERNEDHLQINIRGR 136
PRK14644 PRK14644
hypothetical protein; Provisional
 35-144 3.16e-07

hypothetical protein; Provisional


Pssm-ID: 184779 [Multi-domain]  Cd Length: 136  Bit Score: 46.75  E-value: 3.16e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828173814  35 STLRIYIDHENginVDDCAEVSHQVSAVLDVEDPISVAYSLEVSSPGLERPLFKAaHYEQFIGHEVSIVLKMAVANRRKW 114
Cdd:PRK14644   27 LFLEVILNSRD---LKDIEELTKEISDFIDNLSVEFDFDSLDISSPGFDMDYETD-ELENHIGEIIDVSLNKEVNKTDFI 102

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1828173814 115 KGIIHGVDGETVTITVD--GQ--QEEFALSNISK 144
Cdd:PRK14644  103 TGELLENNPETITLKWNckGQfrKVEINKENIKK 136
PRK14641 PRK14641
ribosome maturation factor RimP;
4-97 5.64e-07

ribosome maturation factor RimP;


Pssm-ID: 173104 [Multi-domain]  Cd Length: 173  Bit Score: 46.69  E-value: 5.64e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828173814   4 LERQLTEMLEAPV--EASGYELVGLEFIRAGAHSTLRIYIDHENGINVDDCAEVSHQVSAVLDVEDPISVA----YSLEV 77
Cdd:PRK14641    5 INNCVLQVLEASAgtKGEGVYLVSMTVKGSGKGRKIEVLLDADTGIRIDQCAFFSRRIRERLEEDEELLGLvgedFDLMV 84

                          90       100
                  ....*....|....*....|
gi 1828173814  78 SSPGLERPLFKAAHYEQFIG 97
Cdd:PRK14641   85 SSPGLGEPIILPRQYGRHVG 104
PRK14646 PRK14646
ribosome maturation factor RimP;
7-147 2.30e-05

ribosome maturation factor RimP;


Pssm-ID: 173109 [Multi-domain]  Cd Length: 155  Bit Score: 41.85  E-value: 2.30e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828173814   7 QLTEMLEAPVEASGYELVGLEFIRAGAHSTLRIYIDHENG--INVDDCAEVSHQVSAVLDVEDPISVAYSLEVSSPGLER 84
Cdd:PRK14646    8 KLEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGddISLDDCALFNTPASEEIENSNLLNCSYVLEISSQGVSD 87

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1828173814  85 PLFKAAHYEQFIGHEVSIVLKMAVANRRKWKGIIHGVDGETVTITVDGQQEEFALSNISKANL 147
Cdd:PRK14646   88 ELTSERDFKTFKGFPVNVELNQKNSKIKFLNGLLYEKSKDYLAINIKGKIKKIPFNEVLKISL 150
PRK14635 PRK14635
ribosome maturation factor RimP;
1-147 1.37e-03

ribosome maturation factor RimP;


Pssm-ID: 184774 [Multi-domain]  Cd Length: 162  Bit Score: 37.20  E-value: 1.37e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828173814   1 MTGLERQLTEMLEApVEASGYELVGLEFIRAGAHSTLRIYIDH----ENGINVDDCAEVSHQVSAVLDVEDPiSVAYSLE 76
Cdd:PRK14635    1 MTVSEEEISEILDR-VLALPVKLYSLKVNQRPNHSLIEVVLDNlehpYGSVSLLECEQVSRKLKEELERISP-DLDFTLK 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1828173814  77 VSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVANrrKW-KGI--IHGVDGETVTIT--------VDGQQEEFALSNISKA 145
Cdd:PRK14635   79 VSSAGAERKLRLPEDLDRFRGIPVRLVFRSEESE--KWqEGIfrLVNRDGDQVELEkfqkgkksKVKKQTTLNLKDILKG 156


                  ..
gi 1828173814 146 NL 147
Cdd:PRK14635  157 NL 158
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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