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Conserved domains on  [gi|2089517342|dbj|BCP70720|]
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flagellin [Enterobacter asburiae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06819 super family cl35511
FliC/FljB family flagellin;
1-274 8.03e-112

FliC/FljB family flagellin;


The actual alignment was detected with superfamily member PRK06819:

Pssm-ID: 235867 [Multi-domain]  Cd Length: 376  Bit Score: 327.12  E-value: 8.03e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   1 MAVINTNLLSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTAQIKGMNQAARNANDGISMAQTAEGS 80
Cdd:PRK06819    2 AAVINTNSLSLLTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISIAQTTEGA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342  81 LNEINNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLNEINRVAGKTDFNGIKLLDGtagtAGVVKIQVGVNDGDTID 160
Cdd:PRK06819   82 LNEINNNLQRVRELTVQAQNGSNSSSDLDSIQDEISQRLAEIDRVSDQTQFNGVKVLAE----DTTMSIQVGANDGETID 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342 161 LDL-----------------------------------------------------------------SGAKADTTTLGV 175
Cdd:PRK06819  158 INLqkidskslglgsfsvsgvsgaltsltftdtaldtsvtgvttttaldfsdistfakgatvhgigdvGTDGAYADGYVI 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342 176 AAIDLKTM----------------------------------------TATDLGTIDAAIAKVDKARSGLGAVQNRFTSA 215
Cdd:PRK06819  238 RTTDGKQYkgevdatngkvtfaddangdpitdatkleaaaqfspagkaTASPLETLDDALKQVDGLRSSLGAVQNRFEST 317

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2089517342 216 INNLNNTSTNLSAAQSRIQDADYATEVSNMSRAQILQQAGTSVLSQANQVPQTVLSLLR 274
Cdd:PRK06819  318 VTNLNNTVTNLSSARSRIEDADYATEVSNMSRAQILQQAGTSVLAQANQVPQTVLSLLR 376
 
Name Accession Description Interval E-value
PRK06819 PRK06819
FliC/FljB family flagellin;
1-274 8.03e-112

FliC/FljB family flagellin;


Pssm-ID: 235867 [Multi-domain]  Cd Length: 376  Bit Score: 327.12  E-value: 8.03e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   1 MAVINTNLLSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTAQIKGMNQAARNANDGISMAQTAEGS 80
Cdd:PRK06819    2 AAVINTNSLSLLTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISIAQTTEGA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342  81 LNEINNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLNEINRVAGKTDFNGIKLLDGtagtAGVVKIQVGVNDGDTID 160
Cdd:PRK06819   82 LNEINNNLQRVRELTVQAQNGSNSSSDLDSIQDEISQRLAEIDRVSDQTQFNGVKVLAE----DTTMSIQVGANDGETID 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342 161 LDL-----------------------------------------------------------------SGAKADTTTLGV 175
Cdd:PRK06819  158 INLqkidskslglgsfsvsgvsgaltsltftdtaldtsvtgvttttaldfsdistfakgatvhgigdvGTDGAYADGYVI 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342 176 AAIDLKTM----------------------------------------TATDLGTIDAAIAKVDKARSGLGAVQNRFTSA 215
Cdd:PRK06819  238 RTTDGKQYkgevdatngkvtfaddangdpitdatkleaaaqfspagkaTASPLETLDDALKQVDGLRSSLGAVQNRFEST 317

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2089517342 216 INNLNNTSTNLSAAQSRIQDADYATEVSNMSRAQILQQAGTSVLSQANQVPQTVLSLLR 274
Cdd:PRK06819  318 VTNLNNTVTNLSSARSRIEDADYATEVSNMSRAQILQQAGTSVLAQANQVPQTVLSLLR 376
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
4-274 1.71e-65

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 204.33  E-value: 1.71e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   4 INTNLLSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTAQIKGMNQAARNANDGISMAQTAEGSLNE 83
Cdd:COG1344     3 ISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGALGE 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342  84 INNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLNEINRVAGKTDFNGIKLLDGTAGTAGVVKIQVGVNDGDtidldl 163
Cdd:COG1344    83 ITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGTATDTPPFQVDYQGDAGQ------ 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342 164 sgakadtttlgvaaidlktmTATDLGTIDAAIAKVDKARSGLGAVQNRFTSAINNLNNTSTNLSAAQSRIQDADYATEVS 243
Cdd:COG1344   157 --------------------RTAALGALDAALDNVSSARAELGARQNRLESAINNLSDLSENLTAALSRLEDADMAEAIT 216

                         250       260       270
                  ....*....|....*....|....*....|.
gi 2089517342 244 NMSRAQILQQAGTSVLSQANQvpQTVLSLLR 274
Cdd:COG1344   217 RLTKLQTLLQAALAALAQANQ--LSLLDLLR 245
lat_flg_LafA_2 NF038071
lateral flagellin LafA;
4-274 1.50e-61

lateral flagellin LafA;


Pssm-ID: 468331 [Multi-domain]  Cd Length: 283  Bit Score: 195.83  E-value: 1.50e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   4 INTNLLSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTAQIKGMNQAARNANDGISMAQTAEGSLNE 83
Cdd:NF038071    5 IHTNYASLVTQNQLNSTNKMLGTAMQRLGTGLRINSAADDAAGLQMATRLQAQSNGQKVGMRNAQDAISMMQTAEGAMDE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342  84 INNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLNEINRVAGKTDFNGIKLLDGTAGTAGVVKIQVGVNDGDTIDLDL 163
Cdd:NF038071   85 MTNITQRMKDLATQSANGTASAADRAAMDAEFKELSAELDNIMDNTTFGGQKLLKDGGKFEAAVTFQIGGSSAEKLDVDA 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342 164 SGAKADTTTLGVAAIDLKTMTATD--------LGTIDAAIAKVDKARSGLGAVQNRFTSAINNLNNTSTNLSAAQSRIQD 235
Cdd:NF038071  165 SANVQKVNAEVVGTEKDVTAGIGTqakaasaaITKLDTLLGDIGAVRSQFGANINRLEHTVNNLSNMKENTDMAKGRIMD 244

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 2089517342 236 ADYATEVSNMSRAQILQQAGTSVLSQANQVPQTVLSLLR 274
Cdd:NF038071  245 ADFAAESTNMTKNQMLMQAGMSVLSNSNQMTGMVTSLLR 283
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 4-140 2.43e-38

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 131.31  E-value: 2.43e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   4 INTNLLSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTAQIKGMNQAARNANDGISMAQTAEGSLNE 83
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2089517342  84 INNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLNEINRVAGKTDFNGIKLLDGT 140
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAGI 137
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 4-264 1.04e-26

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 105.51  E-value: 1.04e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   4 INTNLLSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTAQIKGMNQAARNANDGISMAQTAEGSLNE 83
Cdd:TIGR02550   2 VSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALSS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342  84 INNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLNEINRVAGKTDFNGIKLLDGTA-----------------GTAGV 146
Cdd:TIGR02550  82 VGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFSGTKtdtppfsedeggevtynGDGGQ 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342 147 VKIQVGVND-------GDTIDLDLSGAKADTTTLGVAAI-------------DLKTMTATDLGTIDAAIAKVDKARSGLG 206
Cdd:TIGR02550 162 RKVQVASNRsmpighpGDKVFMSIPNNDKSVFSTGDDLIdalkkledalssgDAKAALSASLNDLDKALDNVLSARAEVG 241

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2089517342 207 AVQNRFTSAINNLNNTSTNLSAAQSRIQDADYATEVSNMSRAQILQQAGTSVLSQANQ 264
Cdd:TIGR02550 242 ARLNRLENLNSRLSEQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQAALKTFAKIQQ 299
 
Name Accession Description Interval E-value
PRK06819 PRK06819
FliC/FljB family flagellin;
1-274 8.03e-112

FliC/FljB family flagellin;


Pssm-ID: 235867 [Multi-domain]  Cd Length: 376  Bit Score: 327.12  E-value: 8.03e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   1 MAVINTNLLSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTAQIKGMNQAARNANDGISMAQTAEGS 80
Cdd:PRK06819    2 AAVINTNSLSLLTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISIAQTTEGA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342  81 LNEINNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLNEINRVAGKTDFNGIKLLDGtagtAGVVKIQVGVNDGDTID 160
Cdd:PRK06819   82 LNEINNNLQRVRELTVQAQNGSNSSSDLDSIQDEISQRLAEIDRVSDQTQFNGVKVLAE----DTTMSIQVGANDGETID 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342 161 LDL-----------------------------------------------------------------SGAKADTTTLGV 175
Cdd:PRK06819  158 INLqkidskslglgsfsvsgvsgaltsltftdtaldtsvtgvttttaldfsdistfakgatvhgigdvGTDGAYADGYVI 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342 176 AAIDLKTM----------------------------------------TATDLGTIDAAIAKVDKARSGLGAVQNRFTSA 215
Cdd:PRK06819  238 RTTDGKQYkgevdatngkvtfaddangdpitdatkleaaaqfspagkaTASPLETLDDALKQVDGLRSSLGAVQNRFEST 317

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2089517342 216 INNLNNTSTNLSAAQSRIQDADYATEVSNMSRAQILQQAGTSVLSQANQVPQTVLSLLR 274
Cdd:PRK06819  318 VTNLNNTVTNLSSARSRIEDADYATEVSNMSRAQILQQAGTSVLAQANQVPQTVLSLLR 376
PRK08869 PRK08869
polar flagellin E;
1-274 8.34e-90

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 271.03  E-value: 8.34e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   1 MAVINTNLLSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTAQIKGMNQAARNANDGISMAQTAEGS 80
Cdd:PRK08869    1 AVNVNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342  81 LNEINNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLNEINRVAGKTDFNGIKLLDGTAGTAgvvKIQVGVNDGDTID 160
Cdd:PRK08869   81 MNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGSFGTK---SFQIGANSGEAVS 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342 161 LDLSGAKADTTTLG------------------------------------------------------------------ 174
Cdd:PRK08869  158 LDLKSMRSDAKIMGgvsydaeggadkdwtvgagntdlnvsfddkggetqaitinakagddieelatyingqtdgvgasvs 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342 175 -------------------------------------VAAIDLKTMTATD--LGTIDAAIAKVDKARSGLGAVQNRFTSA 215
Cdd:PRK08869  238 edgklqlfaagqkvsggvsfsgglaaelglgnatavtVDDLDISTVGGAQqaVAVIDAALKYVDSHRADLGAFQNRFTHA 317

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2089517342 216 INNLNNTSTNLSAAQSRIQDADYATEVSNMSRAQILQQAGTSVLSQANQVPQTVLSLLR 274
Cdd:PRK08869  318 INNLQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALSLLQ 376
PRK08026 PRK08026
FliC/FljB family flagellin;
1-174 1.03e-79

FliC/FljB family flagellin;


Pssm-ID: 236140 [Multi-domain]  Cd Length: 529  Bit Score: 250.04  E-value: 1.03e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   1 MA-VINTNLLSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTAQIKGMNQAARNANDGISMAQTAEG 79
Cdd:PRK08026    1 MAqVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISVAQTTEG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342  80 SLNEINNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLNEINRVAGKTDFNGIKLL--DGTagtagvVKIQVGVNDGD 157
Cdd:PRK08026   81 ALSEINNNLQRVRELTVQAATGTNSQSDLDSIQDEIKSRLDEIDRVSGQTQFNGVNVLakDGS------MKIQVGANDGE 154

                         170
                  ....*....|....*..
gi 2089517342 158 TIDLDLSgaKADTTTLG 174
Cdd:PRK08026  155 TITIDLK--KIDSDTLG 169
PRK12802 PRK12802
flagellin; Provisional
 1-273 7.06e-77

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 234.77  E-value: 7.06e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   1 MAVINTNLLSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTAQIKGMNQAARNANDGISMAQTAEGS 80
Cdd:PRK12802    2 ALTVNTNITSLTVQKNLSRASDALSTSMTRLSSGLKINSAKDDAAGLQIATRQTSQIRGQTQAIKNANDGISIAQTAEGA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342  81 LNEINNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLNEINRVAGKTDFNGIKLLDGTAGTagvVKIQVGVNDGDTID 160
Cdd:PRK12802   82 LQESTNILQRMRELAVQSRNDSNDSTDRAALNKEFTTMLDEITRIATSTTLNGKNLLDGSAGT---MTFQVGANTGQSNQ 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342 161 LDLS-GAKADTTTLGVAAIDLKTMTATD---------LGTIDAAIAKVDKARSGLGAVQNRFTSAINNLNNTSTNLSAAQ 230
Cdd:PRK12802  159 ITFGlSASFDATGLGVGSGTLITGADSAaaetnaqaaITAIDAALQTINTTRADLGAAQNRLQSTISNLQNINENASAAR 238

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 2089517342 231 SRIQDADYATEVSNMSRAQILQQAGTSVLSQANQVPQTVLSLL 273
Cdd:PRK12802  239 GRVQDTDFAAETAQLTKQQTLQQASTSVLAQANQLPSAVLKLL 281
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
4-274 1.71e-65

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 204.33  E-value: 1.71e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   4 INTNLLSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTAQIKGMNQAARNANDGISMAQTAEGSLNE 83
Cdd:COG1344     3 ISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGALGE 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342  84 INNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLNEINRVAGKTDFNGIKLLDGTAGTAGVVKIQVGVNDGDtidldl 163
Cdd:COG1344    83 ITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGTATDTPPFQVDYQGDAGQ------ 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342 164 sgakadtttlgvaaidlktmTATDLGTIDAAIAKVDKARSGLGAVQNRFTSAINNLNNTSTNLSAAQSRIQDADYATEVS 243
Cdd:COG1344   157 --------------------RTAALGALDAALDNVSSARAELGARQNRLESAINNLSDLSENLTAALSRLEDADMAEAIT 216

                         250       260       270
                  ....*....|....*....|....*....|.
gi 2089517342 244 NMSRAQILQQAGTSVLSQANQvpQTVLSLLR 274
Cdd:COG1344   217 RLTKLQTLLQAALAALAQANQ--LSLLDLLR 245
lat_flg_LafA_2 NF038071
lateral flagellin LafA;
4-274 1.50e-61

lateral flagellin LafA;


Pssm-ID: 468331 [Multi-domain]  Cd Length: 283  Bit Score: 195.83  E-value: 1.50e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   4 INTNLLSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTAQIKGMNQAARNANDGISMAQTAEGSLNE 83
Cdd:NF038071    5 IHTNYASLVTQNQLNSTNKMLGTAMQRLGTGLRINSAADDAAGLQMATRLQAQSNGQKVGMRNAQDAISMMQTAEGAMDE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342  84 INNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLNEINRVAGKTDFNGIKLLDGTAGTAGVVKIQVGVNDGDTIDLDL 163
Cdd:NF038071   85 MTNITQRMKDLATQSANGTASAADRAAMDAEFKELSAELDNIMDNTTFGGQKLLKDGGKFEAAVTFQIGGSSAEKLDVDA 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342 164 SGAKADTTTLGVAAIDLKTMTATD--------LGTIDAAIAKVDKARSGLGAVQNRFTSAINNLNNTSTNLSAAQSRIQD 235
Cdd:NF038071  165 SANVQKVNAEVVGTEKDVTAGIGTqakaasaaITKLDTLLGDIGAVRSQFGANINRLEHTVNNLSNMKENTDMAKGRIMD 244

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 2089517342 236 ADYATEVSNMSRAQILQQAGTSVLSQANQVPQTVLSLLR 274
Cdd:NF038071  245 ADFAAESTNMTKNQMLMQAGMSVLSNSNQMTGMVTSLLR 283
PRK12804 PRK12804
flagellin; Provisional
 4-274 2.12e-58

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 188.28  E-value: 2.12e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   4 INTNLLSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTAQIKGMNQAARNANDGISMAQTAEGSLNE 83
Cdd:PRK12804    3 INHNIAALNTLNRLSANNGASQKNMEKLSSGLKINRAGDDAAGLAISEKMRGQIRGLEMASKNAQDGISLIQTAEGALTE 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342  84 INNNLQRVRELAVQASN-GTNSTSDLASLQDEVTARLNEINRVAGKTDFNGIKLLDGT------AGTAGVVKIQVGVNDG 156
Cdd:PRK12804   83 THSILQRVRELVVQAGNtGTQDGTDLGAIQDEIKALVDEIDGISDRTEFNGKKLLDGTfkpaapAAGTKSLTFQIGANAA 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342 157 DTIDLDLSGAKADttTLGVAAIDLKTMTA-----------------------TDLGTIDAAIAKVDKARSGLGAVQNRFT 213
Cdd:PRK12804  163 QQLSVNIEAMSAD--ALGVKDTDGTLVTGksvsdidvtkfanaaaaadggfdDQLKIVDGAIKQVSDQRSKLGAVQNRLE 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2089517342 214 SAINNLNNTSTNLSAAQSRIQDADYATEVSNMSRAQILQQAGTSVLSQANQVPQTVLSLLR 274
Cdd:PRK12804  241 HTINNLGASGENLTAAESRIRDVDMAKEMSEFTKNNILSQASQAMLAQANQQPQNVLQLLR 301
PRK12807 PRK12807
flagellin; Provisional
 4-274 1.61e-50

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 167.69  E-value: 1.61e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   4 INTNLLSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTAQIKGMNQAARNANDGISMAQTAEGSLNE 83
Cdd:PRK12807    3 INTNINSMRTQEYMRQNQDKMNVSMNRLSSGKRINSAADDAAGLAIATRMRARQSGLEKASQNTQDGMSLIRTAESAMNS 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342  84 INNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLNEINRVAGKTDFNGIKLLDGTAGTAGVV------KIQVGVNDG- 156
Cdd:PRK12807   83 VSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQIDYIAKNTEFNDKNLLAGTGAVTIGStsisgaEISIETLDSs 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342 157 ---DTIDLDLSGAKADTTTLGVAAIDLKTMTATD----LGTIDAAIAKVDKARSGLGAVQNRFTSAINNLNNTSTNLSAA 229
Cdd:PRK12807  163 atnQQITIKLANTTAEKLGIDATTSNISISGAASalaaISALNTALNTVAGNRATLGATLNRLDRNVENLNNQATNMASA 242

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 2089517342 230 QSRIQDADYATEVSNMSRAQILQQAGTSVLSQANQVPQTVLSLLR 274
Cdd:PRK12807  243 ASQIEDADMAKEMSEMTKFKILNEAGISMLSQANQTPQMVSKLLQ 287
PRK12806 PRK12806
flagellin; Provisional
 3-168 9.90e-44

flagellin; Provisional


Pssm-ID: 183761 [Multi-domain]  Cd Length: 475  Bit Score: 154.46  E-value: 9.90e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   3 VINTNLLSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTAQIKGMNQAARNANDGISMAQTAEGSLN 82
Cdd:PRK12806    4 VINTNVASLTAQRNLGVSGNMMQTSIQRLSSGLRINSAKDDAAGLAISQRMTAQIRGMNQAVRNANDGISLAQVAEGAMQ 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342  83 EINNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLNEINRVAGKTDFNGIKLLDGTAGTAgvvKIQVGVNDGDTIDLD 162
Cdd:PRK12806   84 ETTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELERIAQNTEFNGQRILDGSFSGA---SFQVGANSNQTINFS 160


                  ....*.
gi 2089517342 163 LSGAKA 168
Cdd:PRK12806  161 IGSIKA 166
PRK12805 PRK12805
FliC/FljB family flagellin;
4-273 1.06e-38

FliC/FljB family flagellin;


Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 136.92  E-value: 1.06e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   4 INTNLLSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTAQIKGMNQAARNANDGISMAQTAEGSLNE 83
Cdd:PRK12805    3 VNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSALSS 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342  84 INNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLNEINRVAGKTDFNGIKLLDGTA-GTAGVVKIQVGVNDGDTIDLD 162
Cdd:PRK12805   83 MSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQTAtGAATQVSIQASDKANDLINID 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342 163 LSGAK----------ADTTTLGVAAIDLKTMTATDLGT--IDAAIAKVDKARSGLGAVQNRFTSAINNLNNTSTNLSAAQ 230
Cdd:PRK12805  163 LFNAKglsagtitlgSGSTVAGYSALSVADADSSQEATeaIDELINNISNGRALLGAGMSRLSYNVSNVNNQSIATKASA 242

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 2089517342 231 SRIQDADYATEVSNMSRAQILQQAGTSVLSQANQVPQTVLSLL 273
Cdd:PRK12805  243 SSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQLI 285
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 4-140 2.43e-38

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 131.31  E-value: 2.43e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   4 INTNLLSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTAQIKGMNQAARNANDGISMAQTAEGSLNE 83
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2089517342  84 INNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLNEINRVAGKTDFNGIKLLDGT 140
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAGI 137
PRK08026 PRK08026
FliC/FljB family flagellin;
139-274 3.44e-34

FliC/FljB family flagellin;


Pssm-ID: 236140 [Multi-domain]  Cd Length: 529  Bit Score: 129.48  E-value: 3.44e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342 139 GTAGTAGVVKIQVGVNDGDTIDLDLSG-----AKADTTTLGVAAidlKTMTATDLGTIDAAIAKVDKARSGLGAVQNRFT 213
Cdd:PRK08026  391 AKDGTTKTAANKLGGADGKTEVVTIDGktyvaSDGKQTTLAEAA---ATTTENPLAALDAAIASIDKFRSSLGAVQNRLD 467

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2089517342 214 SAINNLNNTSTNLSAAQSRIQDADYATEVSNMSRAQILQQAGTSVLSQANQVPQTVLSLLR 274
Cdd:PRK08026  468 SAVTNLNNTTTNLSEAQSRIQDADYATEVSNMSKAQIIQQAGNSVLAKANQVPQQVLSLLQ 528
PRK12803 PRK12803
flagellin; Provisional
 3-274 8.50e-34

flagellin; Provisional


Pssm-ID: 183758 [Multi-domain]  Cd Length: 335  Bit Score: 125.31  E-value: 8.50e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   3 VINTNLLSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTAQIKGMNQAARNANDGISMAQTAEGSLN 82
Cdd:PRK12803    2 IINHNTSAINASRNNSINAANLSKTQEKLSSGHRINRASDDAAGMGVAGKINAQIRGLSQASRNTSKAINFIQTTEGNLN 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342  83 EINNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLNEINRVAGKTDFNGIKLLDGTAGTAGV---------------- 146
Cdd:PRK12803   82 EVEKVLVRMKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIADQAQYNQMHMLSNKSAAQNVrtaeelgmqpakintp 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342 147 -----------VKIQVGVNDGDTIDLDLSGAKADTTTLGVAAID-------------------------------LKTMT 184
Cdd:PRK12803  162 aslsgsqaswtLRVHVGANQDEAIAVNIYAANVANLFSGEGAQQaapvqegaqqegaqaapapaaapaqggvnspVNVTT 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342 185 ATD----LGTIDAAIAKVDKARSGLGAVQNRFTSAINNLNNTSTNLSAAQSRIQDADYATEVSNMSRAQILQQAGTSVLS 260
Cdd:PRK12803  242 TVDanmsLAKIENAIRMISDQRANLGAFQNRLESIKASTEYAIENLKASYAQIKDATMTDEVVASTTNSILTQSAMAMIA 321

                         330
                  ....*....|....
gi 2089517342 261 QANQVPQTVLSLLR 274
Cdd:PRK12803  322 QANQVPQYVLSLLR 335
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 4-264 1.04e-26

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 105.51  E-value: 1.04e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   4 INTNLLSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTAQIKGMNQAARNANDGISMAQTAEGSLNE 83
Cdd:TIGR02550   2 VSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALSS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342  84 INNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLNEINRVAGKTDFNGIKLLDGTA-----------------GTAGV 146
Cdd:TIGR02550  82 VGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFSGTKtdtppfsedeggevtynGDGGQ 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342 147 VKIQVGVND-------GDTIDLDLSGAKADTTTLGVAAI-------------DLKTMTATDLGTIDAAIAKVDKARSGLG 206
Cdd:TIGR02550 162 RKVQVASNRsmpighpGDKVFMSIPNNDKSVFSTGDDLIdalkkledalssgDAKAALSASLNDLDKALDNVLSARAEVG 241

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2089517342 207 AVQNRFTSAINNLNNTSTNLSAAQSRIQDADYATEVSNMSRAQILQQAGTSVLSQANQ 264
Cdd:TIGR02550 242 ARLNRLENLNSRLSEQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQAALKTFAKIQQ 299
PRK12808 PRK12808
flagellin; Provisional
 4-175 3.32e-26

flagellin; Provisional


Pssm-ID: 237212 [Multi-domain]  Cd Length: 476  Bit Score: 106.58  E-value: 3.32e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   4 INTNLLSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTAQIKGMNQAARNANDGISMAQTAEGSLNE 83
Cdd:PRK12808    3 INTNINSMRTQEYMRQNQAKMSNAMDRLSSGKRINNASDDAAGLAIATRMRARESGLGVAANNTQDGMSLIRTADSAMNS 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342  84 INNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLNEINRVAGKTDFNGIKLLDGTAGtagvVKIQVGVNDGDTIDLDL 163
Cdd:PRK12808   83 VSNILLRMRDIANQSANGTNTDKNQAALQKEFAELQKQITYIADNTQFNDKNLLNSNSS----INIQTLDSSDGDKQIGI 158

                         170
                  ....*....|..
gi 2089517342 164 SGAKADTTTLGV 175
Cdd:PRK12808  159 DLKSATLEALGI 170
flgL PRK07701
flagellar hook-associated protein FlgL; Validated
 4-274 2.90e-22

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 181087 [Multi-domain]  Cd Length: 298  Bit Score: 93.52  E-value: 2.90e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   4 INTNLLSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTAQIKGMNQAARNANDGISMAQTAEGSLNE 83
Cdd:PRK07701    3 VTQNMLANNFLRNINSNLEKLDKYQEQLSTGKKITRPSDDPVVAMKSLRYRTDLAEVEQYQKNASDAKSWLENTESALDQ 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342  84 INNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLNEINRVA-----GKTDFNGIKLL------DGTAGT--------- 143
Cdd:PRK07701   83 ATDILQRARELAVQAANGTNTQTDRQAIAQEIEQLKEQLIQIAntqynGRYIFNGTKTDtppvtdDGDNIEnstdsgdie 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342 144 ---AGVVKIQVGVNDGDTIDLDLSGAKADTTTLGVAAIDLKTMTATD----LGTIDAAIAKVDKARSGLGAVQNRFTSAI 216
Cdd:PRK07701  163 feiAKGNTINVNVPGDKAFGGQSGGGSNLFEMLDNLENALDSGDTQGvsnlLSDIDQHIDNVLAVRAELGARSNRLELIE 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2089517342 217 NNLNNTSTNLSAAQSRIQDADYATEVSNMSRAQILQQAGTSVlsQANQVPQTVLSLLR 274
Cdd:PRK07701  243 NRLSDQEVNATKLLSDNEDVDLAEVITDLKTQENVYRAALAV--GARIIQPSLVDFLR 298
PRK13588 PRK13588
flagellin B; Provisional
 4-159 1.49e-20

flagellin B; Provisional


Pssm-ID: 237440 [Multi-domain]  Cd Length: 514  Bit Score: 90.70  E-value: 1.49e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   4 INTNLLSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTAQIKGMNQAARNANDGISMAQTAEGSLNE 83
Cdd:PRK13588    5 INTNIAALNAHAVGVQNNRDLSSSLEKLSSGLRINKAADDASGMAIADSLRSQSANLGQAIRNANDAIGMVQTADKAMDE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342  84 INNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLNEINRVAGKTDFNGIKLLDGT---------AGTAGVVKIQVGVN 154
Cdd:PRK13588   85 QIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANTTSFNGQQMLSGSfsnkefqigAYSNTTVKASIGAT 164


                  ....*
gi 2089517342 155 DGDTI 159
Cdd:PRK13588  165 SSDKI 169
PRK13589 PRK13589
flagellin A;
4-187 1.84e-19

flagellin A;


Pssm-ID: 172158 [Multi-domain]  Cd Length: 576  Bit Score: 87.78  E-value: 1.84e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   4 INTNLLSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTAQIKGMNQAARNANDGISMAQTAEGSLNE 83
Cdd:PRK13589    5 INTNIGALNAHANSVVNSRELDKSLSRLSSGLRINSAADDASGMAIADSLRSQAATLGQAINNGNDAIGILQTADKAMDE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342  84 INNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLNEINRVAGKTDFNGIKLLDGT---------AGTAGVVKIQVGVN 154
Cdd:PRK13589   85 QLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNftnqefqigASSNQTIKATIGAT 164

                         170       180       190
                  ....*....|....*....|....*....|...
gi 2089517342 155 DGDTIDLDLSGAKADTTTLGVAAIDLKTMTATD 187
Cdd:PRK13589  165 QSSKIGVTRFETGGRSFTSGEVQLTIKNYNGID 197
Flagellin_C pfam00700
Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial ...
 188-273 2.74e-19

Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425827 [Multi-domain]  Cd Length: 86  Bit Score: 80.07  E-value: 2.74e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342 188 LGTIDAAIAKVDKARSGLGAVQNRFTSAINNLNNTSTNLSAAQSRIQDADYATEVSNMSRAQILQQAGTSVLSQANQVPQ 267
Cdd:pfam00700   1 LDLIDEAITDLDSVRADLGAVQNRLESATTNLNNQQDNLKAAISRIEDVDPAEESTRMTKLQIQIQASYSLLSQANQLPQ 80


                  ....*.
gi 2089517342 268 TVLSLL 273
Cdd:pfam00700  81 SLLNLL 86
PRK08411 PRK08411
flagellin; Reviewed
 4-187 1.16e-18

flagellin; Reviewed


Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 85.43  E-value: 1.16e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   4 INTNLLSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTAQIKGMNQAARNANDGISMAQTAEGSLNE 83
Cdd:PRK08411    5 INTNVAALNAKANSDLNAKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342  84 INNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLNEINRVAGKTDFNGIKLLDGT---------AGTAGVVKIQVGVN 154
Cdd:PRK08411   85 QLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNftnqefqigASSNQTVKATIGAT 164

                         170       180       190
                  ....*....|....*....|....*....|...
gi 2089517342 155 DGDTIDLDLSGAKADTTTLGVAAIDLKTMTATD 187
Cdd:PRK08411  165 QSSKIGVTRFETGARITTSGVVQLTIKNYNGID 197
PRK12584 PRK12584
flagellin A; Reviewed
 4-139 2.44e-18

flagellin A; Reviewed


Pssm-ID: 237146 [Multi-domain]  Cd Length: 510  Bit Score: 84.19  E-value: 2.44e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   4 INTNLLSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTAQIKGMNQAARNANDGISMAQTAEGSLNE 83
Cdd:PRK12584    5 VNTNINALNAHVQSALTQNALKTSLEKLSSGLRINKAADDASGMTIADSLRSQASSLGQAIANTNDGMGIIQVADKAMDE 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2089517342  84 INNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLNEINRVAGKTDFNGIKLLDG 139
Cdd:PRK12584   85 QLKILDTIKVKATQAAQDGQTTESRKAIQSDIVRLIQGLDNIGNTTTYNGQALLSG 140
PRK06663 PRK06663
flagellar hook-associated protein 3;
1-140 5.74e-16

flagellar hook-associated protein 3;


Pssm-ID: 180648 [Multi-domain]  Cd Length: 419  Bit Score: 77.03  E-value: 5.74e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   1 MAVINTNLLSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTAQIKGMNQAARNANDGISMAQTAEGS 80
Cdd:PRK06663    1 IMRVSHPMQYNNLKSSLRRQESKMTKLQNQLSTGQRIQKLRDDPTAATHSIRYKSRLFKLDRYQKNIDDGKDRLRYAEGY 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342  81 LNEINNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLNEINRVAGKTDFNGIKLLDGT 140
Cdd:PRK06663   81 LQSITNILQRARELAVQGANGTYQADDKKKIAKEIDELLEDLVDIANARGADGYSIFSGT 140
flgL PRK07192
flagellar hook-associated protein FlgL; Reviewed
 4-264 6.72e-14

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 235956 [Multi-domain]  Cd Length: 305  Bit Score: 70.05  E-value: 6.72e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   4 INTNLLSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTAQIKGMNQAARNANDGISMAQTAEGSLNE 83
Cdd:PRK07192    3 ISTNTLYSTMLRSIQQLQAGLGKLQQQMSTGKRILTPSDDPIASARLLELSREQSNNSQYADNIANLSNSLNNQEGHLSG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342  84 INNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLNEINRVAGKTDFNGIKLLDGTAGT--------AGVV-------- 147
Cdd:PRK07192   83 VNDQLQSIRSLLVAAGNGSLSDEDRSAMATELRSMLDSLLGLANAKDSEGNYLFSGTASNtqpitfdaAGGTytyngnsd 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342 148 KIQVGVNDGDTIDLDLSG-------------------AKADTTTLGVAAIDLKTMTATDLGTIDAAIAKVDKARSGLGAV 208
Cdd:PRK07192  163 QRQVQVGEGVQMPVNVTGqsvfqgggldvfntldkliDLLETPALPAADAALTAAVDEALGAIDDALDNVLTVRTELGSR 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2089517342 209 QNRFTSAINNLNNTSTNLSAAQSRIQDADYATEVSNMSRAQILQQAGTSVLSQANQ 264
Cdd:PRK07192  243 QNELDLLDGNHEDRKLQYQKILSDLQDLDYAEALSDLSNQMAALEAAQKTFVKINS 298
flgL PRK08870
flagellar hook-associated protein FlgL; Reviewed
 4-142 2.41e-13

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 236345 [Multi-domain]  Cd Length: 404  Bit Score: 69.17  E-value: 2.41e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   4 INTNLLSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTAQIKGMNQAARNANDGISMAQTAEGSLNE 83
Cdd:PRK08870    3 ISTAQMYQQSVNSMLDQQSQLSQLQQQLSSGKKLLTPSDDPVAAAQAVNLSQQSALLDQYTKNINLARNRLQQEESTLGS 82

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2089517342  84 INNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLNEINRVAGKTDFNGIKLLDGTAG 142
Cdd:PRK08870   83 VEDLLQRARELVVQAGNGSLSDSDRQAIATELQGLRDQLLNLANSKDGSGNYLFAGTQS 141
PRK12687 PRK12687
flagellin; Reviewed
 1-274 5.55e-13

flagellin; Reviewed


Pssm-ID: 105853 [Multi-domain]  Cd Length: 311  Bit Score: 67.77  E-value: 5.55e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   1 MAVINTNLLSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTAQIKGMNQAARNANDGISMAQTAEGS 80
Cdd:PRK12687    1 MSSLLTNTSAMTALQTLRNVSSSLATTQNRISTGYRVATASDNSAYWSIATTMRSDNEALSAVSDALGLGAATVDTMYTA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342  81 LNEI----NNNLQRVRELAVQASNgtnSTSDLASLQDEVTARLNEINRVAGKTDFNGIKLL--DGTA------------- 141
Cdd:PRK12687   81 LTSVvgdsKSGLTALKAKLVAARE---PGIDRTKIQSEITAIQNDLKNTAGLAVFNGENWLsvDSSPssynatksvvssf 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342 142 ----GTAGVVKIQVGV--------NDGDTIDLDLSGAKADTTTLGVAAIDLKTMT--ATDL-------GTIDAAIAKVDK 200
Cdd:PRK12687  158 trvgGTVAIKTIDVNIaklalydtNGSSTTGILDKTVTVGTATASVSSIDIHLLTdsATDLtkldgyiGIVDQALGSVTQ 237

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2089517342 201 ARSGLGAVQNRFTSAINNLNNTSTNLSAAQSRIQDADYATEVSNMSRAQILQQAGTSVLSQANQVPQTVLSLLR 274
Cdd:PRK12687  238 ASADLGATKTRIDSNSNFVKSLRDAIDRGVGQLVDADMNAESTRLQALQTQQQLGIQALSIANQGSQSILSLFK 311
PRK08411 PRK08411
flagellin; Reviewed
 192-274 3.16e-11

flagellin; Reviewed


Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 63.08  E-value: 3.16e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342 192 DAAIAKVDKARSGLGAVQNRFTSAINNLNNTSTNLSAAQSRIQDADYATEVSNMSRAQILQQAGTSVLSQANQVPQTVLS 271
Cdd:PRK08411  490 ETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQANAVQQNVLR 569


                  ...
gi 2089517342 272 LLR 274
Cdd:PRK08411  570 LLQ 572
PRK12584 PRK12584
flagellin A; Reviewed
 192-273 4.88e-11

flagellin A; Reviewed


Pssm-ID: 237146 [Multi-domain]  Cd Length: 510  Bit Score: 62.62  E-value: 4.88e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342 192 DAAIAKVDKARSGLGAVQNRFTSAINNLNNTSTNLSAAQSRIQDADYATEVSNMSRAQILQQAGTSVLSQANQVPQTVLS 271
Cdd:PRK12584  428 ESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRDVDFAEESANFNKNNILAQSGSYAMSQANTVQQNILR 507


                  ..
gi 2089517342 272 LL 273
Cdd:PRK12584  508 LL 509
PRK13588 PRK13588
flagellin B; Provisional
 192-274 1.88e-10

flagellin B; Provisional


Pssm-ID: 237440 [Multi-domain]  Cd Length: 514  Bit Score: 60.65  E-value: 1.88e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342 192 DAAIAKVDKARSGLGAVQNRFTSAINNLNNTSTNLSAAQSRIQDADYATEVSNMSRAQILQQAGTSVLSQANQVPQTVLS 271
Cdd:PRK13588  432 ESARTQLDKIRSDMGSVQMQLVSTINNISVTQVNVKAAESQIRDVDFAEESANFSKYNILAQSGSFAMAQANAVQQNVLR 511


                  ...
gi 2089517342 272 LLR 274
Cdd:PRK13588  512 LLQ 514
flgL PRK12717
flagellar hook-associated protein 3;
4-144 5.18e-10

flagellar hook-associated protein 3;


Pssm-ID: 171679 [Multi-domain]  Cd Length: 523  Bit Score: 59.37  E-value: 5.18e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   4 INTNLLSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTAQIKGMNQAARNANDGISMAQTAEGSLNE 83
Cdd:PRK12717    3 ISTSQFYESSAANYQRNYSNLVKTQEQASSGIRIQTAADDPVGAARLLQLQQQQAMLDQYSGNITTIKNSLTQEESTLTS 82

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2089517342  84 INNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLNEINRVAGKTDFNGIKLLDGTAGTA 144
Cdd:PRK12717   83 INDTLQRARELAVSAGNGGLTDADRKAIASELKQIEAQLLGLMNSKDANGQYLFAGSKSDT 143
PRK13589 PRK13589
flagellin A;
192-274 1.12e-09

flagellin A;


Pssm-ID: 172158 [Multi-domain]  Cd Length: 576  Bit Score: 58.50  E-value: 1.12e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342 192 DAAIAKVDKARSGLGAVQNRFTSAINNLNNTSTNLSAAQSRIQDADYATEVSNMSRAQILQQAGTSVLSQANQVPQTVLS 271
Cdd:PRK13589  494 ETAITNLDQIRADIGSVQNQLQVTINNITVTQVNVKAAESTIRDVDFAAESANFSKYNILAQSGSYAMSQANAVQQNVLK 573


                  ...
gi 2089517342 272 LLR 274
Cdd:PRK13589  574 LLQ 576
PRK14692 PRK14692
flagellar hook-associated protein FlgL;
6-141 1.50e-05

flagellar hook-associated protein FlgL;


Pssm-ID: 173155 [Multi-domain]  Cd Length: 749  Bit Score: 46.11  E-value: 1.50e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   6 TNLLSLTTQ-NNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTAQIKGMNQAARNANDGISMAQTAEGSLNEI 84
Cdd:PRK14692    4 TNKLNFTNSvNNSMGGQSALYQISQQLASGLKIQNSYEDASTYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKALQDM 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2089517342  85 NNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLNEINRVAgKTDFNGIKLLDGTA 141
Cdd:PRK14692   84 VKLLEDFKVKVTQAASDSNSQTSREAIAKELERIKESIVQLA-NTSVNGQYLFAGSQ 139
flgL PRK12718
flagellar hook-associated protein FlgL; Provisional
 10-142 2.55e-05

flagellar hook-associated protein FlgL; Provisional


Pssm-ID: 79176 [Multi-domain]  Cd Length: 510  Bit Score: 45.18  E-value: 2.55e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342  10 SLTTQNNLN---KSQSSLGTAIERLSSGLRINSAKDD--AAGQAIANRMTAQIKGMNQAARNANDGISMAQTaeGSLNEI 84
Cdd:PRK12718    6 ALIYQNGLNgvlNQEAAMARLQEQLSSGRRVLTPADDplAAALAVNVSQTSSMNSNYDANRKQAEQALGAQT--NTLQSV 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2089517342  85 NNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLNEINRVAGKTDFNGIKLLDGTAG 142
Cdd:PRK12718   84 VKNMQEMLKRVVEAGNGTMSDADRQALVIALKGAREELVGLANATDGNGQYLFSGYKG 141
flgL PRK08027
flagellar hook-filament junction protein FlgL;
4-133 2.61e-04

flagellar hook-filament junction protein FlgL;


Pssm-ID: 181202 [Multi-domain]  Cd Length: 317  Bit Score: 41.66  E-value: 2.61e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   4 INTNLLSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDD--AAGQAIanrMTAQIKGMNQAARNANDGISMAQTAEGS- 80
Cdd:PRK08027    3 LSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDpiAASQAV---VLSQAQAQNSQYTLARTFATQKVSLEESv 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2089517342  81 LNEINNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLNEINRVAGKTDFNG 133
Cdd:PRK08027   80 LSQVTTAIQNAQEKIVYAGNGTLSDDDRASLATDLQGLRDQLLNLANTTDGNG 132
flgL PRK08412
flagellar hook-associated protein FlgL; Validated
 15-141 9.84e-04

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 236261 [Multi-domain]  Cd Length: 827  Bit Score: 40.58  E-value: 9.84e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342  15 NNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTAQIKGMNQAARNANDGISMAQTAEGSLNEINNNLQRVREL 94
Cdd:PRK08412   14 NYQNALQNKLNDVNTQIASGLKIQYGYQDSDVYNQNLKLQYEENTLDQGIDVASSAYTFTLNTDKALNEFSKTMEAFKTK 93

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2089517342  95 AVQASNGTNSTSDLASLQDEVTARLNEINRVAgKTDFNGIKLLDGTA 141
Cdd:PRK08412   94 LIQAANDVHSETSREAIANDLEALKEHMINLA-NTSIGGEFLFSGSK 139
flgL PRK08073
flagellar hook-associated protein 3;
4-130 1.49e-03

flagellar hook-associated protein 3;


Pssm-ID: 181222 [Multi-domain]  Cd Length: 287  Bit Score: 39.19  E-value: 1.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089517342   4 INTNLLSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDD--AAGQAIAnrMTAQIKGMNQAARNANDGISMAQTAEGSL 81
Cdd:PRK08073    3 VSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLSMSEDplAASKSFA--IQHSLANIEQMQKDVADSKNVLNQTENTL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 2089517342  82 NEINNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLNEINRVAGKTD 130
Cdd:PRK08073   81 SGMSKSLTRVDQLVLQALNGTNDEKELKAIGAEIDQILKQVVYLANTKE 129
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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