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flagellar biosynthesis protein FlhA [Shewanella algae]
Protein Classification
flagellar biosynthesis protein FlhA ( domain architecture ID 10012637 )
flagellar biosynthesis protein FlhA is required for formation of the rod structure of the flagellar apparatus
List of domain hits
Name
Accession
Description
Interval
E-value
flhA
PRK06012 flagellar type III secretion system protein FlhA;
1-700
0e+00
flagellar type III secretion system protein FlhA;
Pssm-ID: 235672 [Multi-domain]
Cd Length: 697
Bit Score: 1149.48
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 1 MDVK A T L GQLRQV K PANFKGVGTPL LVLA T LAM IV LP M P A FLLD I L FS FNIAL ALVV LLVA VYT QRPLDF A AFPT V LL VA 80
Cdd:PRK06012 1 ANLA A M L RLPGNL K LLKWRDLAVAI LVLA I LAM MI LP L P P FLLD L L LT FNIAL SVLI LLVA LFI QRPLDF S AFPT L LL IT 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 81 TLLRLALNVASTR VV LLEGH N G G DAAGKVIEAFG SV V I GGN YA VG L VVF L IL I IINF A V V TKGAGRI S EV S ARFTLDAMP 160
Cdd:PRK06012 81 TLLRLALNVASTR LI LLEGH E G T DAAGKVIEAFG HF V V GGN FV VG I VVF I IL V IINF V V I TKGAGRI A EV A ARFTLDAMP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 161 GKQMAIDADLNAG ILNQ E Q A RV RR E E VTR EADFYG S MDGASKFVKGDAIAGILI L VINI L GG F IIG I VQHG L SF SQ A V E I 240
Cdd:PRK06012 161 GKQMAIDADLNAG LIDE E E A KK RR K E LQQ EADFYG A MDGASKFVKGDAIAGILI T VINI I GG L IIG V VQHG M SF GE A A E T 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 241 YTLLTIGDGLV A QIP G LL L S I AA ALM VTR QNES GD M G Q Q V V Q Q M F D NPK S L L IA SA VLF VM G I VPGMPHL A FL TF A L L AS 320
Cdd:PRK06012 241 YTLLTIGDGLV S QIP A LL I S T AA GII VTR VSSD GD V G E Q I V G Q L F A NPK A L Y IA AG VLF LL G L VPGMPHL P FL LL A G L LG 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 321 VG A FFIY KR nekn KQQ A L ELA KKGPT E KSLN EP K E L SWDDV RH VD TIG LEVGY R LIPLVD KG QGGELL G RI KGV RKK LS Q 400
Cdd:PRK06012 321 FL A YRLR KR ---- EKK A A ELA AEEAE E EEAA EP E E E SWDDV LP VD PLE LEVGY G LIPLVD EN QGGELL D RI RSI RKK IA Q 396
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 401 ELGFLVP A V H IRDNL D L S PN A YRI SLM GV AS G EA E V R HDCE LA I NPG Q V F G K L D GI E TK D PAFGL D AVWI APE LRE H AQ T 480
Cdd:PRK06012 397 ELGFLVP P V R IRDNL Q L P PN E YRI KIK GV EV G SG E L R PGRL LA M NPG G V D G E L P GI P TK E PAFGL P AVWI DEA LRE Q AQ L 476
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 481 LGYTVVD AA TVVATHL SQLLT N N A SK LLG YE EVQQLLD M LAK HS PKLV DGFI P D V MT LG NVV KV M QNLL N E G VSIRDLRT 560
Cdd:PRK06012 477 LGYTVVD PS TVVATHL TEVIK N H A AE LLG RQ EVQQLLD R LAK EY PKLV EELV P K V LS LG TLQ KV L QNLL K E R VSIRDLRT 556
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 561 I VQ TL LE Y G P KSN D TEV LT AA VR IA L K R M IVQ EIA G PEP E I PVITL A PELEQ M L H QS M Q A TG - G EGPNI EPGLAER MQ QS 639
Cdd:PRK06012 557 I LE TL AD Y A P ITK D PDE LT EH VR QR L G R Q IVQ QYK G EDG E L PVITL D PELEQ L L L QS L Q G TG g G SYLAL EPGLAER LL QS 636
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2037251054 640 L AG A AQK QEM V G Q P AI LL T S GM LR ST L S R FVKHTI P N L R V I SY Q E V PD EKQ IRIV SA VG QQ 700
Cdd:PRK06012 637 L QE A LER QEM K G E P PV LL V S PA LR PY L R R LLERFL P Q L P V L SY N E I PD NIE IRIV GT VG IN 697
Name
Accession
Description
Interval
E-value
flhA
PRK06012 flagellar type III secretion system protein FlhA;
1-700
0e+00
flagellar type III secretion system protein FlhA;
Pssm-ID: 235672 [Multi-domain]
Cd Length: 697
Bit Score: 1149.48
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 1 MDVK A T L GQLRQV K PANFKGVGTPL LVLA T LAM IV LP M P A FLLD I L FS FNIAL ALVV LLVA VYT QRPLDF A AFPT V LL VA 80
Cdd:PRK06012 1 ANLA A M L RLPGNL K LLKWRDLAVAI LVLA I LAM MI LP L P P FLLD L L LT FNIAL SVLI LLVA LFI QRPLDF S AFPT L LL IT 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 81 TLLRLALNVASTR VV LLEGH N G G DAAGKVIEAFG SV V I GGN YA VG L VVF L IL I IINF A V V TKGAGRI S EV S ARFTLDAMP 160
Cdd:PRK06012 81 TLLRLALNVASTR LI LLEGH E G T DAAGKVIEAFG HF V V GGN FV VG I VVF I IL V IINF V V I TKGAGRI A EV A ARFTLDAMP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 161 GKQMAIDADLNAG ILNQ E Q A RV RR E E VTR EADFYG S MDGASKFVKGDAIAGILI L VINI L GG F IIG I VQHG L SF SQ A V E I 240
Cdd:PRK06012 161 GKQMAIDADLNAG LIDE E E A KK RR K E LQQ EADFYG A MDGASKFVKGDAIAGILI T VINI I GG L IIG V VQHG M SF GE A A E T 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 241 YTLLTIGDGLV A QIP G LL L S I AA ALM VTR QNES GD M G Q Q V V Q Q M F D NPK S L L IA SA VLF VM G I VPGMPHL A FL TF A L L AS 320
Cdd:PRK06012 241 YTLLTIGDGLV S QIP A LL I S T AA GII VTR VSSD GD V G E Q I V G Q L F A NPK A L Y IA AG VLF LL G L VPGMPHL P FL LL A G L LG 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 321 VG A FFIY KR nekn KQQ A L ELA KKGPT E KSLN EP K E L SWDDV RH VD TIG LEVGY R LIPLVD KG QGGELL G RI KGV RKK LS Q 400
Cdd:PRK06012 321 FL A YRLR KR ---- EKK A A ELA AEEAE E EEAA EP E E E SWDDV LP VD PLE LEVGY G LIPLVD EN QGGELL D RI RSI RKK IA Q 396
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 401 ELGFLVP A V H IRDNL D L S PN A YRI SLM GV AS G EA E V R HDCE LA I NPG Q V F G K L D GI E TK D PAFGL D AVWI APE LRE H AQ T 480
Cdd:PRK06012 397 ELGFLVP P V R IRDNL Q L P PN E YRI KIK GV EV G SG E L R PGRL LA M NPG G V D G E L P GI P TK E PAFGL P AVWI DEA LRE Q AQ L 476
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 481 LGYTVVD AA TVVATHL SQLLT N N A SK LLG YE EVQQLLD M LAK HS PKLV DGFI P D V MT LG NVV KV M QNLL N E G VSIRDLRT 560
Cdd:PRK06012 477 LGYTVVD PS TVVATHL TEVIK N H A AE LLG RQ EVQQLLD R LAK EY PKLV EELV P K V LS LG TLQ KV L QNLL K E R VSIRDLRT 556
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 561 I VQ TL LE Y G P KSN D TEV LT AA VR IA L K R M IVQ EIA G PEP E I PVITL A PELEQ M L H QS M Q A TG - G EGPNI EPGLAER MQ QS 639
Cdd:PRK06012 557 I LE TL AD Y A P ITK D PDE LT EH VR QR L G R Q IVQ QYK G EDG E L PVITL D PELEQ L L L QS L Q G TG g G SYLAL EPGLAER LL QS 636
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2037251054 640 L AG A AQK QEM V G Q P AI LL T S GM LR ST L S R FVKHTI P N L R V I SY Q E V PD EKQ IRIV SA VG QQ 700
Cdd:PRK06012 637 L QE A LER QEM K G E P PV LL V S PA LR PY L R R LLERFL P Q L P V L SY N E I PD NIE IRIV GT VG IN 697
FlhA
COG1298 Flagellar biosynthesis protein FlhA [Cell motility];
21-698
0e+00
Flagellar biosynthesis protein FlhA [Cell motility];
Pssm-ID: 440909 [Multi-domain]
Cd Length: 676
Bit Score: 1129.76
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 21 VGT PL L V L A T LAM IV LP M P A FLLD I L FS FNIAL A L VV LLVA V Y TQ RPLDF AA FPT V LL VA TL L RL A LNVASTR VV LLEGH 100
Cdd:COG1298 1 LAV PL G V I A I LAM MI LP L P P FLLD L L LA FNIAL S L LI LLVA L Y IK RPLDF SV FPT L LL IT TL F RL S LNVASTR LI LLEGH 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 101 N G G DAAGKVIEAFG SV V I GGNY A VGLVVFLIL I IINF A V V TKGAGRI S EV S ARFTLDAMPGKQMAIDADLNAG ILNQ E Q A 180
Cdd:COG1298 81 E G T DAAGKVIEAFG EF V V GGNY V VGLVVFLIL V IINF V V I TKGAGRI A EV A ARFTLDAMPGKQMAIDADLNAG LIDE E E A 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 181 R V RREE VT READFYG S MDGASKFV K GDAIAGILI LV INI L GG F IIG IV QHG L SF SQ A VEI YTLLTIGDGLV A QIP G LL L S 260
Cdd:COG1298 161 R R RREE IQ READFYG A MDGASKFV R GDAIAGILI TL INI I GG L IIG VL QHG M SF GE A AQT YTLLTIGDGLV S QIP A LL I S 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 261 I AA ALM VTR QNES GD M G Q Q VVQ Q M F D NPK S L L IA SA VL FVM G IV PGMPHL A FL TF A L L ASVG A FFIY KR NEKNKQQALEL 340
Cdd:COG1298 241 T AA GII VTR AGSE GD L G E Q LSG Q L F A NPK A L Y IA AG VL GLL G LI PGMPHL P FL LL A A L LGGL A YRLK KR QKEEEAEEAAA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 341 A KKGPTEK sln EP K E L S W DD VRH VD TIG LE V GY R LIPLVD KG QGG E LL G RIKG V R KK L S QELGF L VP A V H IRDNL D L S PN 420
Cdd:COG1298 321 A AEAEAAA --- EP A E E S V DD LLP VD PLE LE L GY G LIPLVD ES QGG D LL D RIKG I R RQ L A QELGF V VP P V R IRDNL Q L K PN 397
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 421 A YRI SLM GV ASGEA E V R H D CE LAINPG Q V F G K L D GI E TK D PAFGL D AVWI A PE L RE H A QT LGYTVVD AA TV V ATHLS QLL 500
Cdd:COG1298 398 E YRI KIK GV EVARG E L R P D RL LAINPG G V T G E L P GI P TK E PAFGL P AVWI D PE Q RE E A EL LGYTVVD PS TV I ATHLS EVI 477
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 501 TNN A SK LLG YE EVQQLLD M L A K HS PKLV DGFI P DVMT LG NVV KV M QNLL N E G VSIRDLRTI VQ TL LE Y G P KSN D TEV LT A 580
Cdd:COG1298 478 KRH A AE LLG RQ EVQQLLD R L K K EY PKLV EELV P KLLS LG ELQ KV L QNLL R E R VSIRDLRTI LE TL AD Y A P RTK D PDL LT E 557
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 581 A VR I AL K R M IVQ EI AGP EP E I PVITL A PELEQ M L HQ S M Q A T G - G EGPNIE PGLA E R MQ QSLA G A AQ K Q E MV G Q P AI LL T S 659
Cdd:COG1298 558 H VR Q AL G R Q IVQ QY AGP DG E L PVITL D PELEQ L L LE S L Q Q T E q G SYLALD PGLA Q R LL QSLA E A VE K L E AQ G E P PV LL V S 637
650 660 670
....*....|....*....|....*....|....*....
gi 2037251054 660 GM LR ST L S R FVKHTI P N L R V I SY Q E V P DEKQ I RI V SA VG 698
Cdd:COG1298 638 PQ LR PY L R R LLERFL P D L P V L SY N E I P PDVE I ES V GT VG 676
FHIPEP
pfam00771 FHIPEP family;
31-688
0e+00
FHIPEP family;
Pssm-ID: 459933
Cd Length: 645
Bit Score: 1019.63
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 31 LAM IV LP M P A FLLD I L FS FNIAL A L VV LLVA V Y TQ RPLDF AA FPT V LL VA TL L RLALNVASTR VV LL E GH N ggd AAGKVI 110
Cdd:pfam00771 2 LAM MI LP L P P FLLD L L LA FNIAL S L LI LLVA L Y IK RPLDF SV FPT L LL IT TL F RLALNVASTR LI LL H GH E --- AAGKVI 78
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 111 EAFG SV V I GGNY A VGLVVFLIL I I IN F A V V TKGA G R IS EV S ARFTLDAMPGKQMAIDADLNAG ILNQ E Q AR V RREE VT RE 190
Cdd:pfam00771 79 EAFG QF V V GGNY V VGLVVFLIL V I VQ F I V I TKGA E R VA EV A ARFTLDAMPGKQMAIDADLNAG LIDE E E AR R RREE LQ RE 158
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 191 ADFYG S MDGASKFVKGDAIAGI L I LV INI L GG F IIG IV QHG L SF SQ A VEI YTLLTIGDGLV A QIP G LL L S I AA ALM VTR Q 270
Cdd:pfam00771 159 ADFYG A MDGASKFVKGDAIAGI I I TL INI I GG L IIG VL QHG M SF GE A AQT YTLLTIGDGLV S QIP A LL I S T AA GII VTR V 238
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 271 NES G DM G QQV V Q Q M F D NPK S L L IA SA VL FVM G IV PG M P H L A FL TF A L L ASVG A FFIYK R NE K NKQQAL E LAKKGPTE ksl 350
Cdd:pfam00771 239 ASE G NL G EEI V G Q L F A NPK A L Y IA AG VL LLL G LI PG L P T L P FL LL A A L LGFL A YRLRR R KK K AAAEEA E AEEAAAAA --- 315
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 351 nepkelswdd V RH VD TIG LE V GY R LIPLVD KG QGG E LL G RIKG V R KK L SQ ELGF L VP AVH IRDNL D L S PN A YRI SLM GV A 430
Cdd:pfam00771 316 ---------- V LP VD PLE LE L GY G LIPLVD ES QGG D LL D RIKG I R RQ L AL ELGF V VP PIR IRDNL Q L K PN E YRI KIK GV E 385
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 431 SGEA E VRH D CE LA I NPG Q V F G KLD GI E TK D PAFGL D AVWI AP E L RE H A QTL GYTVVD AA TV V ATHL SQLLTNN A SK LLG Y 510
Cdd:pfam00771 386 VARG E LLP D HL LA M NPG G V L G EIP GI P TK E PAFGL P AVWI DE E Q RE E A ELA GYTVVD PP TV I ATHL TEVIKRH A AE LLG R 465
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 511 E EVQ Q LLD M L A K HS PKLV DGFI P DVMT LG NVV KV M QNLL N E G VSIRDLRTI VQ TL LE Y G PK SN D TEV LT AA VR I AL K R M I 590
Cdd:pfam00771 466 Q EVQ A LLD N L K K EY PKLV EELV P KLLS LG EIQ KV L QNLL R E R VSIRDLRTI LE TL AD Y A PK TK D PDL LT EY VR Q AL G R Q I 545
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 591 V Q EI AG PEPEI PVITL A PELEQ M L HQ S M Q ATG G E G -- PNIE P G LA E R MQQS L AG A AQ K Q E MV G Q P AI LLTS GML R ST L S R 668
Cdd:pfam00771 546 C Q QY AG EDGTL PVITL D PELEQ L L RE S L Q QSE G Q G sy LALD P D LA Q R LLEA L SE A VE K L E QQ G E P PV LLTS PDI R RY L R R 625
650 660
....*....|....*....|
gi 2037251054 669 FVKHTI P N L R V I SY Q E V P DE 688
Cdd:pfam00771 626 LLERFL P D L P V L SY N E I P PD 645
FlhA
TIGR01398 flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, ...
21-697
0e+00
flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 273599 [Multi-domain]
Cd Length: 678
Bit Score: 855.41
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 21 VGTPLL V L A T LA MIV LP M PAFLLDIL FSF NIAL A L VV LLV AVYT Q R PLDF AA FPT V LL V ATL L RL A LNVASTR VV L LE GH 100
Cdd:TIGR01398 4 LLLAIG V V A I LA VMI LP L PAFLLDIL LAL NIAL S L LI LLV TLFI Q K PLDF SS FPT L LL I ATL F RL S LNVASTR LI L TH GH 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 101 N G GD AAGKVIEAFG SV V I GGNY AV GL V VF L ILII I NF A V V TKGA G RI S EV S ARFTLDAMPGKQMAIDADLNAG ILNQ E Q A 180
Cdd:TIGR01398 84 E G PN AAGKVIEAFG QF V V GGNY VI GL I VF I ILII V NF I V I TKGA T RI A EV A ARFTLDAMPGKQMAIDADLNAG LITE E E A 163
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 181 RV RREE VTR EADFYG S MDGASKFVKGDAIAGI L I LV INI L GG F IIG I VQHG L S F S Q A VEI YT L LTIGDGLVAQIP G L LL S 260
Cdd:TIGR01398 164 KK RREE LEQ EADFYG A MDGASKFVKGDAIAGI I I TL INI I GG L IIG V VQHG M S L S D A AST YT I LTIGDGLVAQIP A L II S 243
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 261 I A AA L M VTR QNES G DM G QQV V Q Q MFD NP KS LLI AS AVL FVMGI VPG M P HLA FL TF A LLA svg AF FIYKRNEKN KQ QALEL 340
Cdd:TIGR01398 244 T A TG L I VTR ASSE G SF G KAI V T Q LGA NP RA LLI VA AVL GLLAL VPG L P TFP FL FL A GAL --- AF LAWYLRRRS KQ EEEAA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 341 A KKGPTEKSLN E PK E L S WD D VRHV D TIG LE V GY R LIPLVD KG QGG E LL G RI KGV RK K L S QE L GF LV P AVH IRDNL D L S PN 420
Cdd:TIGR01398 321 A EAAKAQEEAA E EE E E S IN D ILAL D DLE LE L GY G LIPLVD DS QGG D LL D RI RSI RK Q L A QE Y GF VM P VIR IRDNL R L P PN 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 421 A YRI SLM GV ASGEA E V R HDCE LA I NPG QVF G KLD G I ET KD PAFGL D A V WI APELR E H A QT LGYTVVD A ATV V ATHLS QLL 500
Cdd:TIGR01398 401 E YRI KIK GV EVARG E L R PGKY LA M NPG NAD G EIP G E ET RE PAFGL P A Y WI SEKNK E E A ER LGYTVVD P ATV L ATHLS EVI 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 501 T NNA SK LL GYE EVQ Q LLD M L AKHS PKLV DGF IPD VMT LG NVV KV M Q N LL N E G VSIR D L R TI VQ TL LE Y G P KSN D TEV L TA 580
Cdd:TIGR01398 481 K NNA AE LL TRQ EVQ N LLD R L KEEY PKLV EEL IPD KVP LG TIQ KV L Q L LL R E R VSIR N L P TI LE TL AD Y A P ITK D PDL L VE 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 581 A VR IA L K R M I V Q EIAGPEPEI PVITL A P E LE QM L HQSMQAT G - GE GPNI EP G L A E RMQQSLAG A AQ K QEMV G QPAI LLTS 659
Cdd:TIGR01398 561 H VR QR L G R Q I T Q QYLDEDGVL PVITL D P D LE AA L AEALKRD G e GE LLDL EP A L L E ELVRAVRK A VE K LANN G ERPV LLTS 640
650 660 670
....*....|....*....|....*....|....*...
gi 2037251054 660 GML R STLS R FVKHTI P N L R V I SY Q E V PD EKQIRI V SA V 697
Cdd:TIGR01398 641 PRV R PYVR R ILERFF P E L P V L SY N E I PD NVRVET V GV V 678
Name
Accession
Description
Interval
E-value
flhA
PRK06012 flagellar type III secretion system protein FlhA;
1-700
0e+00
flagellar type III secretion system protein FlhA;
Pssm-ID: 235672 [Multi-domain]
Cd Length: 697
Bit Score: 1149.48
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 1 MDVK A T L GQLRQV K PANFKGVGTPL LVLA T LAM IV LP M P A FLLD I L FS FNIAL ALVV LLVA VYT QRPLDF A AFPT V LL VA 80
Cdd:PRK06012 1 ANLA A M L RLPGNL K LLKWRDLAVAI LVLA I LAM MI LP L P P FLLD L L LT FNIAL SVLI LLVA LFI QRPLDF S AFPT L LL IT 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 81 TLLRLALNVASTR VV LLEGH N G G DAAGKVIEAFG SV V I GGN YA VG L VVF L IL I IINF A V V TKGAGRI S EV S ARFTLDAMP 160
Cdd:PRK06012 81 TLLRLALNVASTR LI LLEGH E G T DAAGKVIEAFG HF V V GGN FV VG I VVF I IL V IINF V V I TKGAGRI A EV A ARFTLDAMP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 161 GKQMAIDADLNAG ILNQ E Q A RV RR E E VTR EADFYG S MDGASKFVKGDAIAGILI L VINI L GG F IIG I VQHG L SF SQ A V E I 240
Cdd:PRK06012 161 GKQMAIDADLNAG LIDE E E A KK RR K E LQQ EADFYG A MDGASKFVKGDAIAGILI T VINI I GG L IIG V VQHG M SF GE A A E T 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 241 YTLLTIGDGLV A QIP G LL L S I AA ALM VTR QNES GD M G Q Q V V Q Q M F D NPK S L L IA SA VLF VM G I VPGMPHL A FL TF A L L AS 320
Cdd:PRK06012 241 YTLLTIGDGLV S QIP A LL I S T AA GII VTR VSSD GD V G E Q I V G Q L F A NPK A L Y IA AG VLF LL G L VPGMPHL P FL LL A G L LG 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 321 VG A FFIY KR nekn KQQ A L ELA KKGPT E KSLN EP K E L SWDDV RH VD TIG LEVGY R LIPLVD KG QGGELL G RI KGV RKK LS Q 400
Cdd:PRK06012 321 FL A YRLR KR ---- EKK A A ELA AEEAE E EEAA EP E E E SWDDV LP VD PLE LEVGY G LIPLVD EN QGGELL D RI RSI RKK IA Q 396
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 401 ELGFLVP A V H IRDNL D L S PN A YRI SLM GV AS G EA E V R HDCE LA I NPG Q V F G K L D GI E TK D PAFGL D AVWI APE LRE H AQ T 480
Cdd:PRK06012 397 ELGFLVP P V R IRDNL Q L P PN E YRI KIK GV EV G SG E L R PGRL LA M NPG G V D G E L P GI P TK E PAFGL P AVWI DEA LRE Q AQ L 476
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 481 LGYTVVD AA TVVATHL SQLLT N N A SK LLG YE EVQQLLD M LAK HS PKLV DGFI P D V MT LG NVV KV M QNLL N E G VSIRDLRT 560
Cdd:PRK06012 477 LGYTVVD PS TVVATHL TEVIK N H A AE LLG RQ EVQQLLD R LAK EY PKLV EELV P K V LS LG TLQ KV L QNLL K E R VSIRDLRT 556
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 561 I VQ TL LE Y G P KSN D TEV LT AA VR IA L K R M IVQ EIA G PEP E I PVITL A PELEQ M L H QS M Q A TG - G EGPNI EPGLAER MQ QS 639
Cdd:PRK06012 557 I LE TL AD Y A P ITK D PDE LT EH VR QR L G R Q IVQ QYK G EDG E L PVITL D PELEQ L L L QS L Q G TG g G SYLAL EPGLAER LL QS 636
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2037251054 640 L AG A AQK QEM V G Q P AI LL T S GM LR ST L S R FVKHTI P N L R V I SY Q E V PD EKQ IRIV SA VG QQ 700
Cdd:PRK06012 637 L QE A LER QEM K G E P PV LL V S PA LR PY L R R LLERFL P Q L P V L SY N E I PD NIE IRIV GT VG IN 697
FlhA
COG1298 Flagellar biosynthesis protein FlhA [Cell motility];
21-698
0e+00
Flagellar biosynthesis protein FlhA [Cell motility];
Pssm-ID: 440909 [Multi-domain]
Cd Length: 676
Bit Score: 1129.76
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 21 VGT PL L V L A T LAM IV LP M P A FLLD I L FS FNIAL A L VV LLVA V Y TQ RPLDF AA FPT V LL VA TL L RL A LNVASTR VV LLEGH 100
Cdd:COG1298 1 LAV PL G V I A I LAM MI LP L P P FLLD L L LA FNIAL S L LI LLVA L Y IK RPLDF SV FPT L LL IT TL F RL S LNVASTR LI LLEGH 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 101 N G G DAAGKVIEAFG SV V I GGNY A VGLVVFLIL I IINF A V V TKGAGRI S EV S ARFTLDAMPGKQMAIDADLNAG ILNQ E Q A 180
Cdd:COG1298 81 E G T DAAGKVIEAFG EF V V GGNY V VGLVVFLIL V IINF V V I TKGAGRI A EV A ARFTLDAMPGKQMAIDADLNAG LIDE E E A 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 181 R V RREE VT READFYG S MDGASKFV K GDAIAGILI LV INI L GG F IIG IV QHG L SF SQ A VEI YTLLTIGDGLV A QIP G LL L S 260
Cdd:COG1298 161 R R RREE IQ READFYG A MDGASKFV R GDAIAGILI TL INI I GG L IIG VL QHG M SF GE A AQT YTLLTIGDGLV S QIP A LL I S 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 261 I AA ALM VTR QNES GD M G Q Q VVQ Q M F D NPK S L L IA SA VL FVM G IV PGMPHL A FL TF A L L ASVG A FFIY KR NEKNKQQALEL 340
Cdd:COG1298 241 T AA GII VTR AGSE GD L G E Q LSG Q L F A NPK A L Y IA AG VL GLL G LI PGMPHL P FL LL A A L LGGL A YRLK KR QKEEEAEEAAA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 341 A KKGPTEK sln EP K E L S W DD VRH VD TIG LE V GY R LIPLVD KG QGG E LL G RIKG V R KK L S QELGF L VP A V H IRDNL D L S PN 420
Cdd:COG1298 321 A AEAEAAA --- EP A E E S V DD LLP VD PLE LE L GY G LIPLVD ES QGG D LL D RIKG I R RQ L A QELGF V VP P V R IRDNL Q L K PN 397
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 421 A YRI SLM GV ASGEA E V R H D CE LAINPG Q V F G K L D GI E TK D PAFGL D AVWI A PE L RE H A QT LGYTVVD AA TV V ATHLS QLL 500
Cdd:COG1298 398 E YRI KIK GV EVARG E L R P D RL LAINPG G V T G E L P GI P TK E PAFGL P AVWI D PE Q RE E A EL LGYTVVD PS TV I ATHLS EVI 477
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 501 TNN A SK LLG YE EVQQLLD M L A K HS PKLV DGFI P DVMT LG NVV KV M QNLL N E G VSIRDLRTI VQ TL LE Y G P KSN D TEV LT A 580
Cdd:COG1298 478 KRH A AE LLG RQ EVQQLLD R L K K EY PKLV EELV P KLLS LG ELQ KV L QNLL R E R VSIRDLRTI LE TL AD Y A P RTK D PDL LT E 557
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 581 A VR I AL K R M IVQ EI AGP EP E I PVITL A PELEQ M L HQ S M Q A T G - G EGPNIE PGLA E R MQ QSLA G A AQ K Q E MV G Q P AI LL T S 659
Cdd:COG1298 558 H VR Q AL G R Q IVQ QY AGP DG E L PVITL D PELEQ L L LE S L Q Q T E q G SYLALD PGLA Q R LL QSLA E A VE K L E AQ G E P PV LL V S 637
650 660 670
....*....|....*....|....*....|....*....
gi 2037251054 660 GM LR ST L S R FVKHTI P N L R V I SY Q E V P DEKQ I RI V SA VG 698
Cdd:COG1298 638 PQ LR PY L R R LLERFL P D L P V L SY N E I P PDVE I ES V GT VG 676
FHIPEP
pfam00771 FHIPEP family;
31-688
0e+00
FHIPEP family;
Pssm-ID: 459933
Cd Length: 645
Bit Score: 1019.63
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 31 LAM IV LP M P A FLLD I L FS FNIAL A L VV LLVA V Y TQ RPLDF AA FPT V LL VA TL L RLALNVASTR VV LL E GH N ggd AAGKVI 110
Cdd:pfam00771 2 LAM MI LP L P P FLLD L L LA FNIAL S L LI LLVA L Y IK RPLDF SV FPT L LL IT TL F RLALNVASTR LI LL H GH E --- AAGKVI 78
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 111 EAFG SV V I GGNY A VGLVVFLIL I I IN F A V V TKGA G R IS EV S ARFTLDAMPGKQMAIDADLNAG ILNQ E Q AR V RREE VT RE 190
Cdd:pfam00771 79 EAFG QF V V GGNY V VGLVVFLIL V I VQ F I V I TKGA E R VA EV A ARFTLDAMPGKQMAIDADLNAG LIDE E E AR R RREE LQ RE 158
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 191 ADFYG S MDGASKFVKGDAIAGI L I LV INI L GG F IIG IV QHG L SF SQ A VEI YTLLTIGDGLV A QIP G LL L S I AA ALM VTR Q 270
Cdd:pfam00771 159 ADFYG A MDGASKFVKGDAIAGI I I TL INI I GG L IIG VL QHG M SF GE A AQT YTLLTIGDGLV S QIP A LL I S T AA GII VTR V 238
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 271 NES G DM G QQV V Q Q M F D NPK S L L IA SA VL FVM G IV PG M P H L A FL TF A L L ASVG A FFIYK R NE K NKQQAL E LAKKGPTE ksl 350
Cdd:pfam00771 239 ASE G NL G EEI V G Q L F A NPK A L Y IA AG VL LLL G LI PG L P T L P FL LL A A L LGFL A YRLRR R KK K AAAEEA E AEEAAAAA --- 315
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 351 nepkelswdd V RH VD TIG LE V GY R LIPLVD KG QGG E LL G RIKG V R KK L SQ ELGF L VP AVH IRDNL D L S PN A YRI SLM GV A 430
Cdd:pfam00771 316 ---------- V LP VD PLE LE L GY G LIPLVD ES QGG D LL D RIKG I R RQ L AL ELGF V VP PIR IRDNL Q L K PN E YRI KIK GV E 385
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 431 SGEA E VRH D CE LA I NPG Q V F G KLD GI E TK D PAFGL D AVWI AP E L RE H A QTL GYTVVD AA TV V ATHL SQLLTNN A SK LLG Y 510
Cdd:pfam00771 386 VARG E LLP D HL LA M NPG G V L G EIP GI P TK E PAFGL P AVWI DE E Q RE E A ELA GYTVVD PP TV I ATHL TEVIKRH A AE LLG R 465
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 511 E EVQ Q LLD M L A K HS PKLV DGFI P DVMT LG NVV KV M QNLL N E G VSIRDLRTI VQ TL LE Y G PK SN D TEV LT AA VR I AL K R M I 590
Cdd:pfam00771 466 Q EVQ A LLD N L K K EY PKLV EELV P KLLS LG EIQ KV L QNLL R E R VSIRDLRTI LE TL AD Y A PK TK D PDL LT EY VR Q AL G R Q I 545
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 591 V Q EI AG PEPEI PVITL A PELEQ M L HQ S M Q ATG G E G -- PNIE P G LA E R MQQS L AG A AQ K Q E MV G Q P AI LLTS GML R ST L S R 668
Cdd:pfam00771 546 C Q QY AG EDGTL PVITL D PELEQ L L RE S L Q QSE G Q G sy LALD P D LA Q R LLEA L SE A VE K L E QQ G E P PV LLTS PDI R RY L R R 625
650 660
....*....|....*....|
gi 2037251054 669 FVKHTI P N L R V I SY Q E V P DE 688
Cdd:pfam00771 626 LLERFL P D L P V L SY N E I P PD 645
FlhA
TIGR01398 flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, ...
21-697
0e+00
flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 273599 [Multi-domain]
Cd Length: 678
Bit Score: 855.41
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 21 VGTPLL V L A T LA MIV LP M PAFLLDIL FSF NIAL A L VV LLV AVYT Q R PLDF AA FPT V LL V ATL L RL A LNVASTR VV L LE GH 100
Cdd:TIGR01398 4 LLLAIG V V A I LA VMI LP L PAFLLDIL LAL NIAL S L LI LLV TLFI Q K PLDF SS FPT L LL I ATL F RL S LNVASTR LI L TH GH 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 101 N G GD AAGKVIEAFG SV V I GGNY AV GL V VF L ILII I NF A V V TKGA G RI S EV S ARFTLDAMPGKQMAIDADLNAG ILNQ E Q A 180
Cdd:TIGR01398 84 E G PN AAGKVIEAFG QF V V GGNY VI GL I VF I ILII V NF I V I TKGA T RI A EV A ARFTLDAMPGKQMAIDADLNAG LITE E E A 163
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 181 RV RREE VTR EADFYG S MDGASKFVKGDAIAGI L I LV INI L GG F IIG I VQHG L S F S Q A VEI YT L LTIGDGLVAQIP G L LL S 260
Cdd:TIGR01398 164 KK RREE LEQ EADFYG A MDGASKFVKGDAIAGI I I TL INI I GG L IIG V VQHG M S L S D A AST YT I LTIGDGLVAQIP A L II S 243
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 261 I A AA L M VTR QNES G DM G QQV V Q Q MFD NP KS LLI AS AVL FVMGI VPG M P HLA FL TF A LLA svg AF FIYKRNEKN KQ QALEL 340
Cdd:TIGR01398 244 T A TG L I VTR ASSE G SF G KAI V T Q LGA NP RA LLI VA AVL GLLAL VPG L P TFP FL FL A GAL --- AF LAWYLRRRS KQ EEEAA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 341 A KKGPTEKSLN E PK E L S WD D VRHV D TIG LE V GY R LIPLVD KG QGG E LL G RI KGV RK K L S QE L GF LV P AVH IRDNL D L S PN 420
Cdd:TIGR01398 321 A EAAKAQEEAA E EE E E S IN D ILAL D DLE LE L GY G LIPLVD DS QGG D LL D RI RSI RK Q L A QE Y GF VM P VIR IRDNL R L P PN 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 421 A YRI SLM GV ASGEA E V R HDCE LA I NPG QVF G KLD G I ET KD PAFGL D A V WI APELR E H A QT LGYTVVD A ATV V ATHLS QLL 500
Cdd:TIGR01398 401 E YRI KIK GV EVARG E L R PGKY LA M NPG NAD G EIP G E ET RE PAFGL P A Y WI SEKNK E E A ER LGYTVVD P ATV L ATHLS EVI 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 501 T NNA SK LL GYE EVQ Q LLD M L AKHS PKLV DGF IPD VMT LG NVV KV M Q N LL N E G VSIR D L R TI VQ TL LE Y G P KSN D TEV L TA 580
Cdd:TIGR01398 481 K NNA AE LL TRQ EVQ N LLD R L KEEY PKLV EEL IPD KVP LG TIQ KV L Q L LL R E R VSIR N L P TI LE TL AD Y A P ITK D PDL L VE 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 581 A VR IA L K R M I V Q EIAGPEPEI PVITL A P E LE QM L HQSMQAT G - GE GPNI EP G L A E RMQQSLAG A AQ K QEMV G QPAI LLTS 659
Cdd:TIGR01398 561 H VR QR L G R Q I T Q QYLDEDGVL PVITL D P D LE AA L AEALKRD G e GE LLDL EP A L L E ELVRAVRK A VE K LANN G ERPV LLTS 640
650 660 670
....*....|....*....|....*....|....*...
gi 2037251054 660 GML R STLS R FVKHTI P N L R V I SY Q E V PD EKQIRI V SA V 697
Cdd:TIGR01398 641 PRV R PYVR R ILERFF P E L P V L SY N E I PD NVRVET V GV V 678
EscV
COG4789 Type III secretory pathway, component EscV [Intracellular trafficking, secretion, and ...
25-697
0e+00
Type III secretory pathway, component EscV [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443818 [Multi-domain]
Cd Length: 688
Bit Score: 620.66
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 25 L L VL A TLA M IV LP M P AF L L DIL FSF NI ALALVV L L VA V Y TQR PL D F AA FP T VLL VA TL L RLAL NVAS TR VV LL EG hngg D 104
Cdd:COG4789 15 A L LV A IIF M MI LP L P TY L V DIL IAL NI TISVLL L M VA M Y IPS PL A F ST FP S VLL IT TL F RLAL SIST TR LI LL QA ---- D 90
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 105 A a G KV IE A FG SV V I GGN YA VGLV V FLI LIIIN F A V V TKG AG R IS EV S ARF T LDAMPGKQM A IDADL N AG ILNQEQ AR V RR 184
Cdd:COG4789 91 A - G HI IE T FG NF V V GGN LV VGLV I FLI ITVVQ F I V I TKG SE R VA EV A ARF S LDAMPGKQM S IDADL R AG VIDADE AR R RR 169
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 185 EEVTR E ADF YG S MDGA S KFVKGDAIAGI L I LVI NI L GG FI IG IV QHG L S F S Q A VEI Y TL LTIGDGLVAQIP G LL L SI A A A 264
Cdd:COG4789 170 ALLEK E SQL YG A MDGA M KFVKGDAIAGI I I ILV NI I GG IA IG VL QHG M S A S E A LHT Y SI LTIGDGLVAQIP A LL I SI T A G 249
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 265 LM VTR QN -- E SGDM G QQV V Q Q MFDN PK S LLIA SAV L FVMGIV PG M P H L A FL TF A L L ASVGA F FIYK R NEKNKQQ A LELAK 342
Cdd:COG4789 250 II VTR VS gd E DSNL G REI V S Q LLAQ PK A LLIA AVL L LLFALI PG F P T L V FL LL A A L LGGLG F KLLR R KRRAAAA A ESEPL 329
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 343 KG -- PTEKSLN E PKELSW DD VRHVDTIG L EVGYR L I P LVD kgq GGE L LGR I KGV R KK L SQE LG FLV P AV HIR D N LD L SPN 420
Cdd:COG4789 330 PA lq AAGAKGS E AGLIDG DD FPPTVPLI L RLSPS L A P ALE --- AEA L NQE I RRL R NR L FED LG VPL P GI HIR F N PG L PDD 406
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 421 A Y R I S L MG V ASGEAEVRHDCE L AINPG --- QVF G k LDGI E TKD P AFGLDAV W IAP E LR E HAQTL G YT V V DA AT V V A T HLS 497
Cdd:COG4789 407 E Y S I L L NE V PVARGTLPPGHL L VRDDV del EAL G - IPAE E GEL P LGEGPSL W VPA E HA E LLEKA G IK V R DA ED V L A L HLS 485
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 498 QL L TNN A SKLL G YE E VQQ LLD MLA K HS P K LV DGFI p D V MT L GNVVK V M Q N L LN EG V SIR D LR T I VQT L L E Y GPK SN D TEV 577
Cdd:COG4789 486 LV L RRH A AEFI G IQ E TRY LLD QME K KY P E LV KEVQ - R V LP L QRIAE V L Q R L VE EG I SIR N LR L I LEA L I E W GPK EK D VVM 564
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 578 LT AA VRIALKR M I VQEIA G PEPEI P VIT L A PE L E Q M LHQSMQA T GGEGP - NIE P GLAERMQQS L AG A AQKQEMV GQ PAI L 656
Cdd:COG4789 565 LT EY VRIALKR Y I CHRYS G GQGTL P ALL L D PE I E E M IRGAIRQ T SAGSF l ALD P EQSQAILEQ L RQ A LGPLPPG GQ DPV L 644
650 660 670 680
....*....|....*....|....*....|....*....|.
gi 2037251054 657 LTS GML R STLSRFVKHTI P N L R V I SYQE VPD E KQIRIVSAV 697
Cdd:COG4789 645 LTS MDI R RFVRKLIEREF P D L P V L SYQE LTP E IRVQPLGRI 685
hrcV
TIGR01399 type III secretion protein, HrcV family; Members of this family are closely homologous to the ...
25-697
0e+00
type III secretion protein, HrcV family; Members of this family are closely homologous to the flagellar biosynthesis protein FlhA (TIGR01398) and should all participate in type III secretion systems. Examples include InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc. Type III secretion systems resemble flagellar biogenesis systems, and may share the property of translocating special classes of peptides through the membrane. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 273600 [Multi-domain]
Cd Length: 677
Bit Score: 531.92
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 25 LL V LA TLA M IV LP M P AF L L DIL FSF NI ALALVV L LV A V Y TQ RPL DFAA FP T VLL VA TL L RLAL NVAS TR VV LL EGH nggd 104
Cdd:TIGR01399 9 LL L LA IIS M MI LP L P TL L V DIL IAI NI TISVLL L MI A I Y IP RPL ALST FP S VLL IT TL F RLAL SIST TR LI LL HAD ---- 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 105 a AG KV IEAFG SV V I GGN Y AVGLV V FLI LI I IN F A V V TKG AG R IS EVSARF T LDAMPGKQM A IDADL N AG ILNQEQ AR V RR 184
Cdd:TIGR01399 85 - AG NI IEAFG QF V V GGN L AVGLV I FLI IT I VQ F I V I TKG SE R VA EVSARF S LDAMPGKQM S IDADL R AG VIDADE AR R RR 163
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 185 EEVTR E ADF YG S MDGA S KFVKGDAIAGI L I LV INI L GG FI IG IV QHG L S F S Q A VEI YT L LTIGDGLV A QIP G LL L S IA A A 264
Cdd:TIGR01399 164 STLEK E SQL YG A MDGA M KFVKGDAIAGI I I VL INI I GG IS IG VT QHG M S A S E A LHL YT V LTIGDGLV S QIP A LL I S VT A G 243
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 265 LM VTR QN -- ESGDM G QQVVQ Q MFDN P KS LL I A SAV L FVMGIV PG M P H L A F LTF A L L ASVGAFFIYK R N ---- EK NK Q QA L 338
Cdd:TIGR01399 244 II VTR VP ge AERNL G REIGH Q LTSQ P RA LL L A AVL L LGFALI PG F P L L V F ALL A V L LAAAGYLLSR R K rsra KA NK A QA S 323
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 339 ELAKKG P TEKSLNEPK elsw D DVRHVDTIG L EVGYR L IPLV DK gqg GE L LGR I KGV R KK L SQE LG FLV P AVH IR DNLD L S 418
Cdd:TIGR01399 324 GAVASA P GAAAPIKNL ---- D PFAEACPLI L RLSPD L QSSA DK --- DT L DQE I ERM R WA L FED LG IPL P GII IR VGDS L P 396
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 419 P N AY RI S L MG V ASGEAEVRHD c EL A I N P G Q --- VFGKLDG I ET K DPAFGLDA VW IAP E LR E HA Q TL G YTVVDAAT V VATH 495
Cdd:TIGR01399 397 D N EF RI L L YE V PVLRDTIPPG - HV A L N D G V dni EVAGIPA I SG K RWPGESQR VW VTE E GA E KL Q GA G LGYFSDSQ V ITHR 475
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 496 L SQL L TN NA SKLL G YE E VQQ LLD MLAKHS P K LV DG f IPD V MT L GNVVK V M Q N L LN E G VSIR D LR T I VQ TL L E YGPKSN D T 575
Cdd:TIGR01399 476 L KAT L LR NA QEFI G IQ E TRY LLD QMEREY P E LV KE - VQR V LP L QRIAE V L Q R L VS E Q VSIR N LR L I LE TL I E WAQREK D V 554
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 576 EV LT AA VRIALKR M I VQEI A GPEPEIPVITLA PE L E QMLHQSMQA T GGEG ----- P NIEPG L AERMQ Q SLAGAAQKQ emv 650
Cdd:TIGR01399 555 VM LT EY VRIALKR Y I CHRY A NGGRQLSAVLID PE I E ELIRGAIRQ T STGT ylald P DDSEQ L LDQIR Q AVGDLPRAP --- 631
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 2037251054 651 g QPAI LLTS GML R STLSRFVKHTI P N L R V I SYQE VPD E KQIRIVSAV 697
Cdd:TIGR01399 632 - SQPV LLTS MDI R RYVRKMIESEF P D L P V L SYQE LGE E IEVQVLGRI 677
flhA
PRK12792 flagellar biosynthesis protein FlhA; Reviewed
27-697
1.21e-159
flagellar biosynthesis protein FlhA; Reviewed
Pssm-ID: 237205
Cd Length: 694
Bit Score: 476.91
E-value: 1.21e-159
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 27 VL A T LA MIV LP M PA F L L DI LFS F N IAL ALVV L L VA VYT QRPL D F A AFPTVLL V ATLLRLALN V A S TR VV L LE G HN G G DAA 106
Cdd:PRK12792 24 IV A I LA VLF LP V PA V L I DI GLA F S IAL SVLI L M VA LWI QRPL E F S AFPTVLL I ATLLRLALN I A T TR LI L SN G QE G V DAA 103
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 107 G K VI EA F GSV V IG G NYAV GLVVF L ILI II NF A V V TKGA G RI S EV S ARFTLDA M PGKQMAIDADL N AG ILNQEQ A RV RR E E 186
Cdd:PRK12792 104 G H VI AG F SQF V MS G DFVI GLVVF A ILI TV NF L V I TKGA T RI A EV G ARFTLDA I PGKQMAIDADL S AG LIDDKE A QR RR R E 183
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 187 VTR E AD F Y GSMDGASKFV K GDAIA GIL I LVI NI L GG F IIG IVQ HG LSFS QA VEIY T L L TI GDGLV A QIP G L LL S I AA A L M 266
Cdd:PRK12792 184 LEE E SA F F GSMDGASKFV R GDAIA SLI I IAV NI F GG I IIG VTR HG MPLG QA ADVF T K L SV GDGLV S QIP A L IV S L AA G L L 263
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 267 V TRQNES G DMG Q Q V VQ Q MFDN P KS L LI A SAVL FV MG IVPG M P hla FL T FALL AS V G AF FI Y --- K R ne KNKQQ A L E L AK K 343
Cdd:PRK12792 264 V SKGGTR G SAE Q A V LG Q LGAY P RA L SV A ALLM FV LA IVPG L P --- FL P FALL GG V M AF VA Y tip R R -- RAARA A A E A AK V 338
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 344 GPT E K S LNEPKEL S WDDVRHVDT I G L EV G YR L IPLVDKGQ g G EL LG R IKGV R K K LSQEL GF L VP AVHIR D N L D L S P NA Y R 423
Cdd:PRK12792 339 KRE E E S AQAEAKD S VKEQLRTAE I E L CL G KQ L AAQLQGAH - A EL AH R VAKM R R K FAKQY GF V VP EIKLT D S L S L P P KT Y Q 417
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 424 I SLM G VASGEA E V R HDCE L AINPGQVFGKLD G I E TKD PAFG LD A V W IAPELREHAQTL G YTV VD A A T V VA THLS QLLT NN 503
Cdd:PRK12792 418 I KIH G TVVATQ E L R PGEL L VVVGDGPRPDVP G E E VRE PAFG MK A L W VPDAFANEVRRD G FEP VD N A S V LL THLS EVIR NN 497
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 504 ASK LL G Y EEVQQ LLD M L AKHSPK L V D GFI P DVMTLGNVVK V MQN LL N E G VSIR D L RT I VQTLL E YG P KSNDT E VLTAA VR 583
Cdd:PRK12792 498 LPQ LL S Y KDMRA LLD R L DPEYKR L I D DIC P SQISYSGLQA V LKL LL A E R VSIR N L HL I LEAVA E IA P HARRA E QIAEH VR 577
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 584 I alkr M I V Q E I A G PEPE --- IP V IT L APELEQML HQS MQATG - GE -- GPN I E P G L A E RMQQSLAG A AQKQEMV G QPAI L L 657
Cdd:PRK12792 578 M ---- R I A Q Q I C G DLSD ngv LK V LR L GNRWDLAF HQS LKRDA k GE vv EFD I D P R L V E QFGTEASE A IRERMDQ G HQFV L V 653
650 660 670 680
....*....|....*....|....*....|....*....|
gi 2037251054 658 T SGML R STLSRFVKHTI P N L R V I S YQ E VPDEKQ I RIVSAV 697
Cdd:PRK12792 654 T APEA R PYVRMIIERLF P T L P V L S HL E IARGVE I KSLGTI 693
PRK15337
PRK15337 EscV/YscV/HrcV family type III secretion system export apparatus protein;
25-694
5.89e-151
EscV/YscV/HrcV family type III secretion system export apparatus protein;
Pssm-ID: 237946 [Multi-domain]
Cd Length: 686
Bit Score: 454.45
E-value: 5.89e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 25 L L VLATL AM IVL P M P AF L L D I L FSF NI A LA LV V LLVAV Y TQ R P L D F AA FP TV LL VA TL L RLAL NVAST R VV LL EGH nggd 104
Cdd:PRK15337 19 V L MVMII AM LII P L P TY L V D F L IGL NI V LA IL V FMGSF Y ID R I L S F ST FP SI LL IT TL F RLAL SISTS R LI LL DAD ---- 94
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 105 a AG KV I EA FG SV VIG GNYA VG L V V F L I LIIIN F A V V TKG AG R IS EV S ARF T LD A MPGKQM A IDADL N AGI LNQEQARV RR 184
Cdd:PRK15337 95 - AG EI I TT FG QF VIG DSLV VG F V I F S I VTVVQ F I V I TKG SE R VA EV A ARF S LD G MPGKQM S IDADL K AGI IDADGVKE RR 173
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 185 EEVT RE ADF YGS M DGA S KF V KGDAIAGI L I LVI N IL GG FII G IV QHG LSF S Q A VEI YT L LTIGDGLVAQIP G LL L SI A A A 264
Cdd:PRK15337 174 SVLE RE SQL YGS F DGA M KF I KGDAIAGI I I IFV N LI GG ISV G MT QHG MDL S S A LST YT I LTIGDGLVAQIP A LL I SI S A G 253
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 265 LM VTR Q N ESG D - M G QQVVQ Q MFD NP KS L LIASAVLFVM G IV PG M P HLA FL TF A ll ASV G AF F IY - K RNE K N K QQ A LELAK 342
Cdd:PRK15337 254 FI VTR V N GDS D n L G RNIMS Q LLS NP FV L VVTAILALSI G LL PG F P LPV FL LL A -- VVL G VL F YF k K FRK K K K SA A EPDTS 331
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 343 K G PTEKSLN E PKEL S WDDVRHV D TIGL E V g YR LI P LV DKGQGGE L -- LGRIKGV R KKLSQEL G FLV P AVHI R DNLD L SP N 420
Cdd:PRK15337 332 G G EAPLDID E KAGS S LGLIGDL D KVIP E T - VP LI L LV PEARRPD L ek ENLAERL R SQFFIDY G VRL P DILL R YSEG L DD N 410
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 421 AYRISLMGVASGEAEVRH D CELAI N PGQVFGK L DGIE T KDPAF G LDAV W IAP E LR E HAQT LGY TVVD A ATVVATH LS Q LL 500
Cdd:PRK15337 411 SIVVLINEIRAAQFTIYF D LHRVV N YSDELVS L GINP T IIDSG G EQYY W VPH E DT E KLAK LGY VLRS A IDELYHC LS V LL 490
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 501 TN N ASKLL G YE E VQQ LLD M L A K HS P K L vdgf IPD V M --- T LGNVVK V M Q N LL N E GV SIR DLRT I VQT L LEYG P KSN D TEV 577
Cdd:PRK15337 491 LH N INEFF G IQ E TKH LLD Q L E K KY P D L ---- LKE V Y rha T VQRISE V L Q R LL S E RI SIR NMKL I MEA L ALWA P REK D VIM 566
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 578 L TAA VR I AL K R M I VQEI A G p EP E IPVIT L AP E L E QMLHQSM - Q AT GG EGP N IE P GLA E RMQQS L AG A AQKQEMVGQPAI L 656
Cdd:PRK15337 567 L VEH VR G AL A R Y I CHKF A A - GG E LRAVV L SA E V E DAIRKGI r Q TS GG TFL N LD P AES E NLMDL L TL A LDDLGIAHRDIV L 645
650 660 670
....*....|....*....|....*....|....*...
gi 2037251054 657 L T S GML R STLSRFVKHTI P N L R V I S YQ E VP D EKQIRIV 694
Cdd:PRK15337 646 L V S VDI R RFVKKLIEGRF P E L E V L S FG E IA D SVEVNVI 683
PRK12720
PRK12720 EscV/YscV/HrcV family type III secretion system export apparatus protein;
25-697
5.69e-149
EscV/YscV/HrcV family type III secretion system export apparatus protein;
Pssm-ID: 183699 [Multi-domain]
Cd Length: 675
Bit Score: 448.78
E-value: 5.69e-149
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 25 LLV L ATLA M IV LP M P AFLL DIL FSF N IALALVV L LV A V Y TQR PL D F AA FP TV LL VA TL L RLAL NVAST R V VLL E g H N ggd 104
Cdd:PRK12720 21 VML L VAVF M MI LP L P TWMV DIL IAI N LMFSVIL L MI A I Y LRD PL E F SV FP SL LL IT TL Y RLAL TISTS R L VLL Q - H D --- 96
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 105 a AG KVIE AFG SV V I GGN Y AVGL V VF L I LI I IN F A V V TKG AG R IS EVSARF T LD A MPGKQM A ID A D LN AG ILNQEQ AR VR R 184
Cdd:PRK12720 97 - AG EIVD AFG KF V V GGN L AVGL I VF T I IT I VQ F I V I TKG SE R VA EVSARF S LD G MPGKQM S ID G D MR AG VIDADE AR RL R 175
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 185 EE V TR E ADFY G S MDGA S KFVKGDAIAGI LILVI NI L GG F IIG IV QH GL S F S Q AV EI Y TL L T IGDGL VA QIP G LL L SI A A A 264
Cdd:PRK12720 176 QH V QK E SRLL G A MDGA M KFVKGDAIAGI IVILV NI I GG I IIG VM QH DM S A S E AV NT Y AV L S IGDGL CG QIP S LL I SI T A G 255
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 265 LM VTR ------ QN ESGDMGQ Q VVQ Q mfdn P KS L LI A SA VL FVMGIV PG M P HLA F LTF A L L ASVG A FFIYKRNEKNKQQAL 338
Cdd:PRK12720 256 II VTR vpgekr QN LANELSS Q IGR Q ---- P QA L WL A AV VL MLFALI PG F P FIT F AFL A A L VAAP A ILLRRKKSVVSANGV 331
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 339 E -- LAKK GP TEK S L nepkelswddvrhvd TI G - LEVGY RL I P LVDKGQGGEL lgr I KGV R KK L SQE LG FLV P A V H I RDNL 415
Cdd:PRK12720 332 E ag GSEE GP EGD S M --------------- VP G a CPLML RL A P TLHSADLIRD --- I DAL R WF L FED LG VPL P E V N I EVDP 393
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 416 D L SPNAYRIS L MGVASGEAEVRHDCE L AIN p G QVFGKLDGIE T K d P AFGLDAV W IAPELR E H AQ TL G YT V VDAATVVATH 495
Cdd:PRK12720 394 E L TEKTLTVL L YQEPVLSLSLPPQAL L LLI - G PDASLVGDSQ T L - P NGMGQIC W LTKDQA E Q AQ GF G LD V FAGSQRISAL 471
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 496 L SQL L TNNASKLL G YE E VQQ L L D MLA K HSPK LV DG f IPDVMTL G NVVKVM Q N L LN E G VSIRDLRTI VQ TL L E YG P KSN D T 575
Cdd:PRK12720 472 L KCV L LRYMGEFI G VQ E TRY L M D AME K RYGE LV KE - LQRQLPV G KIAEIL Q R L VS E R VSIRDLRTI FG TL V E WA P REK D V 550
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 576 EV LT AA VRIAL K R M I VQEIAGPEPEI PV ITLAPEL E QMLHQ S M - Q ATG G E gpni EPG L AE R MQQSLAGAAQKQEMVG Q PA 654
Cdd:PRK12720 551 VM LT EY VRIAL R R H I LRRFNHEGKWL PV LRIGEGI E NLIRE S I r Q TSA G T ---- YSA L SS R HSTQILQLIEQALKQS Q KL 626
650 660 670 680
....*....|....*....|....*....|....*....|...
gi 2037251054 655 I L L TS GML R ST L SRFVKH T IPN L R V I S Y QE VP DE KQ I RI V SAV 697
Cdd:PRK12720 627 V L V TS VDV R RF L RKIIER T LFD L P V L S W QE LG DE AE I KV V GSI 669
PRK05910
PRK05910 type III secretion system protein; Validated
25-697
3.94e-53
type III secretion system protein; Validated
Pssm-ID: 168293
Cd Length: 584
Bit Score: 193.08
E-value: 3.94e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 25 LLV L AT L AMIVL P M P AF LLD ILFSF N I AL A L VVLLVAVYTQRPLDFAA FP TVL L VAT LLRL A LN V ASTR VV L LE G hnggd 104
Cdd:PRK05910 14 AIP L CI L FTLIF P L P QW LLD FGLCI N F AL S L SIVFWVFSLRSSASARL FP SLF L YLC LLRL G LN L ASTR WI L SS G ----- 88
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 105 A A GKV I EAF G SVVIG G NYAVG L VVF L I L III NF A V V TKG AG RI S EV S ARF T L D A M PGKQM AI DADL NA G ILNQEQARVRR 184
Cdd:PRK05910 89 W A SPL I FSL G NFFSL G SLPAA L TAC L L L FLV NF L V I TKG SE RI A EV R ARF S L E A L PGKQM SL DADL VS G RASYSRVSKQK 168
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 185 EEVTR E A DF YGS M D G ASK FVKGDAI AGILI L VI NIL GGFII G IVQHG lsfsq AV EIYT L LTI GD G LV A Q I P G LL L S I AAA 264
Cdd:PRK05910 169 NSLLE E S DF FSA M E G VFR FVKGDAI MSCIL L GV NIL AATFL G RATGY ----- AV GDLW L TVL GD A LV S Q V P A LL T S C AAA 243
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 265 LMVTRQN E SGDMG Q QVVQQMFDNPKSLLIASAV L FVMGIV PG M P HLAF L T F AL L asvga F F IYKR N EKNKQQ a L ELA K KG 344
Cdd:PRK05910 244 TLISKVG E KESLL Q HLLDYYEQSRQHFRFIALL L CSLACI PG A P KAPI L G F SV L ----- L F LAYK N PSSGET - L LFQ K ER 317
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 345 PTEKS L NE P K E LS wddvrhvdtiglevgyrliplvdk G QGGE L L gri KGV R KKLS QELG FLV P A vhirdnldlspnayri 424
Cdd:PRK05910 318 FEFVE L AL P D E GV ------------------------ G NPAN L Y --- RAA R EEIF QELG VVF P E ---------------- 354
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 425 slmgvasg E AE VRH dcelainpgqvfgkldgi ETKD P AFGLDAVWIA pe LRE haqtlgytvvdaat VVATHLSQL L T N N A 504
Cdd:PRK05910 355 -------- E IV VRH ------------------ VESS P RLIFSGQEVY -- LRE -------------- LSCPAILPS L R N L A 392
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 505 SKLLGYEE V QQ L LDMLAKHSPKLVDGF IP DVMTLGNV V KVMQN L LN E G VS IRDLRT I VQTLLE YG PKSNDT E V L TAA VR I 584
Cdd:PRK05910 393 PEAISERF V KR L VEEFQEVAGISIEEI IP KKISENSL V FLLRA L VR E R VS LHLFPK I LEAIAV YG SQGKSS E E L VEK VR K 472
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037251054 585 A L KRM I VQEIAGPEPEIP VIT LAPEL EQ MLHQ S MQAT gge G P NIEPGLAERMQQS L agaaq KQEMV G QPAILL T SGML R S 664
Cdd:PRK05910 473 Y L GKQ I GRSLWNRQDTLE VIT IDSHV EQ FIRD S YSKS --- N P DMNEKVVAQVKSL L ----- ERSGE G NFRAIV T GCET R F 544
650 660 670
....*....|....*....|....*....|...
gi 2037251054 665 T L SRF V KHTI P N L R V I S YQ E V P D E KQ I RIVS AV 697
Cdd:PRK05910 545 E L KKM V DPYF P D L L V L S HS E L P E E IP I SLLG AV 577
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
