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Conserved domains on  [gi|2295595860|dbj|BDR06492|]
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hypothetical protein JNE102603_p1-23 (plasmid) [Escherichia coli]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
transpos_IS1 super family cl41321
IS1 family transposase; Proteins of this family are DDE transposases encoded by the IS1 family ...
 19-47 1.72e-06

IS1 family transposase; Proteins of this family are DDE transposases encoded by the IS1 family elements usually through a translational frameshift mechanism.


The actual alignment was detected with superfamily member NF033558:

Pssm-ID: 468085 [Multi-domain]  Cd Length: 199  Bit Score: 41.87  E-value: 1.72e-06
                          10        20
                  ....*....|....*....|....*....
gi 2295595860  19 LKKLRPQSVTSRIQPGSDVIVCAEMDEQW 47
Cdd:NF033558   76 LKKLGPRQVTPEPLKPADIVLICELDELW 104
 
Name Accession Description Interval E-value
transpos_IS1 NF033558
IS1 family transposase; Proteins of this family are DDE transposases encoded by the IS1 family ...
 19-47 1.72e-06

IS1 family transposase; Proteins of this family are DDE transposases encoded by the IS1 family elements usually through a translational frameshift mechanism.


Pssm-ID: 468085 [Multi-domain]  Cd Length: 199  Bit Score: 41.87  E-value: 1.72e-06
                          10        20
                  ....*....|....*....|....*....
gi 2295595860  19 LKKLRPQSVTSRIQPGSDVIVCAEMDEQW 47
Cdd:NF033558   76 LKKLGPRQVTPEPLKPADIVLICELDELW 104
 
Name Accession Description Interval E-value
transpos_IS1 NF033558
IS1 family transposase; Proteins of this family are DDE transposases encoded by the IS1 family ...
 19-47 1.72e-06

IS1 family transposase; Proteins of this family are DDE transposases encoded by the IS1 family elements usually through a translational frameshift mechanism.


Pssm-ID: 468085 [Multi-domain]  Cd Length: 199  Bit Score: 41.87  E-value: 1.72e-06
                          10        20
                  ....*....|....*....|....*....
gi 2295595860  19 LKKLRPQSVTSRIQPGSDVIVCAEMDEQW 47
Cdd:NF033558   76 LKKLGPRQVTPEPLKPADIVLICELDELW 104
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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