NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|754285927|sp|C1FZ15|]
View 

RecName: Full=ATPase synthesis protein 25, mitochondrial; Flags: Precursor

Protein Classification

RsfS/YbeB/iojap family protein( domain architecture ID 10493352)

RsfS/YbeB/iojap family protein similar to Arabidopsis thaliana chloroplastic protein Iojap and fungal mitochondrial ATPase synthesis protein 25

CATH:  3.30.460.10
Gene Ontology:  GO:0090071|GO:0017148|GO:0043022
SCOP:  4001878

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
RsfS pfam02410
Ribosomal silencing factor during starvation; This family is expressed by almost all bacterial ...
 164-292 1.04e-04

Ribosomal silencing factor during starvation; This family is expressed by almost all bacterial and eukaryotic genomes but not by archaea. Its function is to down-regulate protein synthesis under conditions of nutrient shortage, and it does this by binding to protein L14 of the large ribosomal subunit, thus acting as a ribosomal silencing factor (RsfS) by blocking the joining of the ribosomal subunits. This family is structurally homologous to nucleotidyltransferases.


:

Pssm-ID: 460550  Cd Length: 97  Bit Score: 41.66  E-value: 1.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754285927  164 MIFGTARSVKHLNVSADKFCRWLRTTYKLRPDADGLlgrnelkiklrrkarrarlikragstlkqpddgITTGWICVDVG 243
Cdd:pfam02410  30 FVIATGTSERHVRAIADEVEEKLKEAGGKPLRIEGL---------------------------------REGDWVLLDYG 76

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 754285927  244 iveggqlskpegvqkagfvgfgtviqgtRIVVQMMTEEKREEIDLESLW 292
Cdd:pfam02410  77 ----------------------------DVVVHIFTPEAREFYNLERLW 97
 
Name Accession Description Interval E-value
RsfS pfam02410
Ribosomal silencing factor during starvation; This family is expressed by almost all bacterial ...
 164-292 1.04e-04

Ribosomal silencing factor during starvation; This family is expressed by almost all bacterial and eukaryotic genomes but not by archaea. Its function is to down-regulate protein synthesis under conditions of nutrient shortage, and it does this by binding to protein L14 of the large ribosomal subunit, thus acting as a ribosomal silencing factor (RsfS) by blocking the joining of the ribosomal subunits. This family is structurally homologous to nucleotidyltransferases.


Pssm-ID: 460550  Cd Length: 97  Bit Score: 41.66  E-value: 1.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754285927  164 MIFGTARSVKHLNVSADKFCRWLRTTYKLRPDADGLlgrnelkiklrrkarrarlikragstlkqpddgITTGWICVDVG 243
Cdd:pfam02410  30 FVIATGTSERHVRAIADEVEEKLKEAGGKPLRIEGL---------------------------------REGDWVLLDYG 76

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 754285927  244 iveggqlskpegvqkagfvgfgtviqgtRIVVQMMTEEKREEIDLESLW 292
Cdd:pfam02410  77 ----------------------------DVVVHIFTPEAREFYNLERLW 97
 
Name Accession Description Interval E-value
RsfS pfam02410
Ribosomal silencing factor during starvation; This family is expressed by almost all bacterial ...
 164-292 1.04e-04

Ribosomal silencing factor during starvation; This family is expressed by almost all bacterial and eukaryotic genomes but not by archaea. Its function is to down-regulate protein synthesis under conditions of nutrient shortage, and it does this by binding to protein L14 of the large ribosomal subunit, thus acting as a ribosomal silencing factor (RsfS) by blocking the joining of the ribosomal subunits. This family is structurally homologous to nucleotidyltransferases.


Pssm-ID: 460550  Cd Length: 97  Bit Score: 41.66  E-value: 1.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754285927  164 MIFGTARSVKHLNVSADKFCRWLRTTYKLRPDADGLlgrnelkiklrrkarrarlikragstlkqpddgITTGWICVDVG 243
Cdd:pfam02410  30 FVIATGTSERHVRAIADEVEEKLKEAGGKPLRIEGL---------------------------------REGDWVLLDYG 76

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 754285927  244 iveggqlskpegvqkagfvgfgtviqgtRIVVQMMTEEKREEIDLESLW 292
Cdd:pfam02410  77 ----------------------------DVVVHIFTPEAREFYNLERLW 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH