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Conserved domains on  [gi|1789581186|emb|CAA0381079|]
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unnamed protein product [Arabidopsis thaliana]

Protein Classification

RCC1-like domain-containing protein( domain architecture ID 13421108)

RCC1 (regulator of chromosome condensation)-like (RLD) domain-containing is a versatile domain which may perform many different functions, including guanine nucleotide exchange on small GTP-binding proteins, enzyme inhibition or interaction with proteins and lipids

CATH:  2.130.10.30
PubMed:  18442486
SCOP:  3001704

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 65-412 4.51e-66

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


:

Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 216.00  E-value: 4.51e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789581186  65 DISCGREHTAAVASDGSLFAWGANEYGQLGDGTEVGRKHPKKVKQLQSefVKFVSCGAFCTAAIAEprenDGTlstsrLW 144
Cdd:COG5184     2 QVAAGGSHSCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVRVPGLSN--VVAVAAGGDHTCALKA----DGT-----VW 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789581186 145 VWGQN------QGSNLPRLFSGAFPATTAIRQVSCGTAHVVALSEEGLLQAWGYNEQGQLGRGVTcEGLQAPRVInayak 218
Cdd:COG5184    71 CWGNNsygqlgDGTTTDRTTPVKVPGLTGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTT-TNRLTPVQV----- 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789581186 219 fldeAPELVKIMQLSCGEYHTAALSDAGEVYTWGLGSMGQLGHVSLQSgdkELIPRRVVGLDGVSmkEVACGGVHTCALS 298
Cdd:COG5184   145 ----DAGLSGVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTD---RPTPVQVGGLSGVV--AVAAGGDHSCALK 215

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789581186 299 LEGALYAWgggqagqlglgpQSGFFFSVSNGSeMLLRNVPVLVI-PTDVRLVACGHSHTLVYMREGRICGWGYNSYGQAA 377
Cdd:COG5184   216 SDGTVWCW------------GSNSSGQLGDGT-TTDRATPVQVAgLTGVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLG 282

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1789581186 378 NEKSSYAWYPSPVDWcVGQVRKLAAGGGHS-AVLTD 412
Cdd:COG5184   283 DGTTTDRSTPVKVPG-LSGVVAVAAGSSHTcALLTD 317
ATS1 super family cl34932
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 21-104 2.21e-12

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


The actual alignment was detected with superfamily member COG5184:

Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 68.08  E-value: 2.21e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789581186  21 AIYVWGYNQSGQTGRNEQEKLLrIPKQLPPElfgcpaganSRWLDISCGREHTAAVASDGSLFAWGANEYGQLGDGTEVG 100
Cdd:COG5184   269 TVWCWGDNSYGQLGDGTTTDRS-TPVKVPGL---------SGVVAVAAGSSHTCALLTDGTVWCWGDNAYGQLGDGTTTD 338


                  ....
gi 1789581186 101 RKHP 104
Cdd:COG5184   339 RSTP 342
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 65-412 4.51e-66

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 216.00  E-value: 4.51e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789581186  65 DISCGREHTAAVASDGSLFAWGANEYGQLGDGTEVGRKHPKKVKQLQSefVKFVSCGAFCTAAIAEprenDGTlstsrLW 144
Cdd:COG5184     2 QVAAGGSHSCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVRVPGLSN--VVAVAAGGDHTCALKA----DGT-----VW 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789581186 145 VWGQN------QGSNLPRLFSGAFPATTAIRQVSCGTAHVVALSEEGLLQAWGYNEQGQLGRGVTcEGLQAPRVInayak 218
Cdd:COG5184    71 CWGNNsygqlgDGTTTDRTTPVKVPGLTGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTT-TNRLTPVQV----- 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789581186 219 fldeAPELVKIMQLSCGEYHTAALSDAGEVYTWGLGSMGQLGHVSLQSgdkELIPRRVVGLDGVSmkEVACGGVHTCALS 298
Cdd:COG5184   145 ----DAGLSGVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTD---RPTPVQVGGLSGVV--AVAAGGDHSCALK 215

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789581186 299 LEGALYAWgggqagqlglgpQSGFFFSVSNGSeMLLRNVPVLVI-PTDVRLVACGHSHTLVYMREGRICGWGYNSYGQAA 377
Cdd:COG5184   216 SDGTVWCW------------GSNSSGQLGDGT-TTDRATPVQVAgLTGVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLG 282

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1789581186 378 NEKSSYAWYPSPVDWcVGQVRKLAAGGGHS-AVLTD 412
Cdd:COG5184   283 DGTTTDRSTPVKVPG-LSGVVAVAAGSSHTcALLTD 317
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
79-128 5.75e-13

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 63.31  E-value: 5.75e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1789581186  79 DGSLFAWGANEYGQLGDGTEVGRKHPKKVKQLQSEFVKFVSCGAFCTAAI 128
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 21-104 2.21e-12

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 68.08  E-value: 2.21e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789581186  21 AIYVWGYNQSGQTGRNEQEKLLrIPKQLPPElfgcpaganSRWLDISCGREHTAAVASDGSLFAWGANEYGQLGDGTEVG 100
Cdd:COG5184   269 TVWCWGDNSYGQLGDGTTTDRS-TPVKVPGL---------SGVVAVAAGSSHTCALLTDGTVWCWGDNAYGQLGDGTTTD 338


                  ....
gi 1789581186 101 RKHP 104
Cdd:COG5184   339 RSTP 342
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
22-76 5.01e-05

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 40.58  E-value: 5.01e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1789581186  22 IYVWGYNQSGQTGRNEQEKLLrIPKQLPPELfgcpagaNSRWLDISCGREHTAAV 76
Cdd:pfam00415   4 VYTWGRNDYGQLGLGTTENVL-VPQKVEGLS-------GNKVVQVACGGDHTVAL 50
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 65-412 4.51e-66

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 216.00  E-value: 4.51e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789581186  65 DISCGREHTAAVASDGSLFAWGANEYGQLGDGTEVGRKHPKKVKQLQSefVKFVSCGAFCTAAIAEprenDGTlstsrLW 144
Cdd:COG5184     2 QVAAGGSHSCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVRVPGLSN--VVAVAAGGDHTCALKA----DGT-----VW 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789581186 145 VWGQN------QGSNLPRLFSGAFPATTAIRQVSCGTAHVVALSEEGLLQAWGYNEQGQLGRGVTcEGLQAPRVInayak 218
Cdd:COG5184    71 CWGNNsygqlgDGTTTDRTTPVKVPGLTGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTT-TNRLTPVQV----- 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789581186 219 fldeAPELVKIMQLSCGEYHTAALSDAGEVYTWGLGSMGQLGHVSLQSgdkELIPRRVVGLDGVSmkEVACGGVHTCALS 298
Cdd:COG5184   145 ----DAGLSGVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTD---RPTPVQVGGLSGVV--AVAAGGDHSCALK 215

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789581186 299 LEGALYAWgggqagqlglgpQSGFFFSVSNGSeMLLRNVPVLVI-PTDVRLVACGHSHTLVYMREGRICGWGYNSYGQAA 377
Cdd:COG5184   216 SDGTVWCW------------GSNSSGQLGDGT-TTDRATPVQVAgLTGVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLG 282

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1789581186 378 NEKSSYAWYPSPVDWcVGQVRKLAAGGGHS-AVLTD 412
Cdd:COG5184   283 DGTTTDRSTPVKVPG-LSGVVAVAAGSSHTcALLTD 317
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 21-310 4.69e-49

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 171.31  E-value: 4.69e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789581186  21 AIYVWGYNQSGQTGRNEQEKLlRIPKQLPpelfgcpagANSRWLDISCGREHTAAVASDGSLFAWGANEYGQLGDGTEVG 100
Cdd:COG5184    68 TVWCWGNNSYGQLGDGTTTDR-TTPVKVP---------GLTGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTN 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789581186 101 RKHPKKVKQLQSEFVKfVSCGAFCTAAIAEprenDGTLstsrlWVWGQNQ------GSNLPRLFSGAFPATTAIRQVSCG 174
Cdd:COG5184   138 RLTPVQVDAGLSGVVA-IAAGGYHTCALKS----DGTV-----WCWGANSygqlgdGTTTDRPTPVQVGGLSGVVAVAAG 207

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789581186 175 TAHVVALSEEGLLQAWGYNEQGQLGRGVTCEGLqAPRVInayakfldeaPELVKIMQLSCGEYHTAALSDAGEVYTWGLG 254
Cdd:COG5184   208 GDHSCALKSDGTVWCWGSNSSGQLGDGTTTDRA-TPVQV----------AGLTGVVAIAAGGSHTCALKSDGTVWCWGDN 276

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1789581186 255 SMGQLGHVSLQSgdkELIPRRVVGLDGVSmkEVACGGVHTCALSLEGALYAWGGGQ 310
Cdd:COG5184   277 SYGQLGDGTTTD---RSTPVKVPGLSGVV--AVAAGSSHTCALLTDGTVWCWGDNA 327
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 22-260 1.43e-42

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 153.98  E-value: 1.43e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789581186  22 IYVWGYNQSGQTGRNEQEKLLrIPKQLPPELfgcpaganSRWLDISCGREHTAAVASDGSLFAWGANEYGQLGDGTEVGR 101
Cdd:COG5184   119 VWCWGDNSSGQLGDGTTTNRL-TPVQVDAGL--------SGVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTDR 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789581186 102 KHPKKVKQLQSefVKFVSCGAFCTAAIAepreNDGTlstsrLWVWGQNQ------GSNLPRLFSGAFPATTAIRQVSCGT 175
Cdd:COG5184   190 PTPVQVGGLSG--VVAVAAGGDHSCALK----SDGT-----VWCWGSNSsgqlgdGTTTDRATPVQVAGLTGVVAIAAGG 258

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789581186 176 AHVVALSEEGLLQAWGYNEQGQLGRGVTCEGLQAPRVinayakfldeaPELVKIMQLSCGEYHTAALSDAGEVYTWGLGS 255
Cdd:COG5184   259 SHTCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVKV-----------PGLSGVVAVAAGSSHTCALLTDGTVWCWGDNA 327


                  ....*
gi 1789581186 256 MGQLG 260
Cdd:COG5184   328 YGQLG 332
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 169-412 1.74e-39

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 145.50  E-value: 1.74e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789581186 169 RQVSCGTAHVVALSEEGLLQAWGYNEQGQLGRGVTCEGLQAPRVinayakfldeaPELVKIMQLSCGEYHTAALSDAGEV 248
Cdd:COG5184     1 TQVAAGGSHSCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVRV-----------PGLSNVVAVAAGGDHTCALKADGTV 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789581186 249 YTWGLGSMGQLGhvsLQSGDKELIPRRVVGLDGVsmKEVACGGVHTCALSLEGALYAWGggqagqlglgpqSGFFFSVSN 328
Cdd:COG5184    70 WCWGNNSYGQLG---DGTTTDRTTPVKVPGLTGV--VAVAAGYYHSCALKSDGTVWCWG------------DNSSGQLGD 132

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789581186 329 GSEMlLRNVPVLVIP--TDVRLVACGHSHTLVYMREGRICGWGYNSYGQAANEKSSYAWYPSPVDwCVGQVRKLAAGGGH 406
Cdd:COG5184   133 GTTT-NRLTPVQVDAglSGVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTDRPTPVQVG-GLSGVVAVAAGGDH 210


                  ....*..
gi 1789581186 407 S-AVLTD 412
Cdd:COG5184   211 ScALKSD 217
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 21-203 1.49e-29

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 118.16  E-value: 1.49e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789581186  21 AIYVWGYNQSGQTGRNEQekllriPKQLPPElfgcPAGANSRWLDISCGREHTAAVASDGSLFAWGANEYGQLGDGTEVG 100
Cdd:COG5184   169 TVWCWGANSYGQLGDGTT------TDRPTPV----QVGGLSGVVAVAAGGDHSCALKSDGTVWCWGSNSSGQLGDGTTTD 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789581186 101 RKHPKKVKQLQSefVKFVSCGAFCTAAIAepreNDGTLstsrlWVWGQN------QGSNLPRLFSGAFPATTAIRQVSCG 174
Cdd:COG5184   239 RATPVQVAGLTG--VVAIAAGGSHTCALK----SDGTV-----WCWGDNsygqlgDGTTTDRSTPVKVPGLSGVVAVAAG 307

                         170       180
                  ....*....|....*....|....*....
gi 1789581186 175 TAHVVALSEEGLLQAWGYNEQGQLGRGVT 203
Cdd:COG5184   308 SSHTCALLTDGTVWCWGDNAYGQLGDGTT 336
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
79-128 5.75e-13

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 63.31  E-value: 5.75e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1789581186  79 DGSLFAWGANEYGQLGDGTEVGRKHPKKVKQLQSEFVKFVSCGAFCTAAI 128
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 21-104 2.21e-12

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 68.08  E-value: 2.21e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789581186  21 AIYVWGYNQSGQTGRNEQEKLLrIPKQLPPElfgcpaganSRWLDISCGREHTAAVASDGSLFAWGANEYGQLGDGTEVG 100
Cdd:COG5184   269 TVWCWGDNSYGQLGDGTTTDRS-TPVKVPGL---------SGVVAVAAGSSHTCALLTDGTVWCWGDNAYGQLGDGTTTD 338


                  ....
gi 1789581186 101 RKHP 104
Cdd:COG5184   339 RSTP 342
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
246-297 7.08e-12

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 60.22  E-value: 7.08e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1789581186 246 GEVYTWGLGSMGQLGHVSLQSgdkELIPRRVVGLDGVSMKEVACGGVHTCAL 297
Cdd:pfam00415   2 GRVYTWGRNDYGQLGLGTTEN---VLVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
65-92 2.52e-07

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 46.65  E-value: 2.52e-07
                          10        20
                  ....*....|....*....|....*...
gi 1789581186  65 DISCGREHTAAVASDGSLFAWGANEYGQ 92
Cdd:pfam13540   3 SVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
184-242 5.48e-07

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 46.36  E-value: 5.48e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1789581186 184 EGLLQAWGYNEQGQLGRGvTCEGLQAPRVInayakfldEAPELVKIMQLSCGEYHTAAL 242
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLG-TTENVLVPQKV--------EGLSGNKVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
231-258 7.19e-06

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 42.41  E-value: 7.19e-06
                          10        20
                  ....*....|....*....|....*...
gi 1789581186 231 QLSCGEYHTAALSDAGEVYTWGLGSMGQ 258
Cdd:pfam13540   3 SVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
168-197 1.50e-05

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 41.64  E-value: 1.50e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 1789581186 168 IRQVSCGTAHVVALSEEGLLQAWGYNEQGQ 197
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
346-375 3.66e-05

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 40.49  E-value: 3.66e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 1789581186 346 VRLVACGHSHTLVYMREGRICGWGYNSYGQ 375
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
22-76 5.01e-05

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 40.58  E-value: 5.01e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1789581186  22 IYVWGYNQSGQTGRNEQEKLLrIPKQLPPELfgcpagaNSRWLDISCGREHTAAV 76
Cdd:pfam00415   4 VYTWGRNDYGQLGLGTTENVL-VPQKVEGLS-------GNKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
362-410 6.73e-04

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 37.50  E-value: 6.73e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1789581186 362 EGRICGWGYNSYGQAANEKSSYAWYPSPVDWCVGQ-VRKLAAGGGHSAVL 410
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNkVVQVACGGDHTVAL 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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