|
Name |
Accession |
Description |
Interval |
E-value |
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
222-286 |
2.87e-35 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 127.90 E-value: 2.87e-35
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 3850794 222 LGDRVLVGGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKV 286
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
82-146 |
2.94e-29 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 110.96 E-value: 2.94e-29
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 3850794 82 VGERVWVNGVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGAVRYFECPALQGIFTRPSKL 146
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
222-286 |
2.34e-28 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 108.44 E-value: 2.34e-28
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 3850794 222 LGDRVLVGGT-KTGVVRYVGETDFAKGEWCGVELDEPL-GKNDGAVAGTRYFQCPPKFGLFAPIHKV 286
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKV 67
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
82-147 |
5.14e-25 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 98.81 E-value: 5.14e-25
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 3850794 82 VGERVWVNG-VKPGVVQYLGETQFAPGQWAGVVLDDPV-GKNDGAVGAVRYFECPALQGIFTRPSKLT 147
Cdd:smart01052 1 VGDRVEVGGgGRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
357-953 |
9.04e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 85.76 E-value: 9.04e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 357 ALQEALKEKQqhIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQheqyVAEAEEKLQRARLlvenvrkekvdlsnQL 436
Cdd:COG1196 217 ELKEELKELE--AELLLLKLRELEAELEELEAELEELEAELEELEAE----LAELEAELEELRL--------------EL 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 437 EEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEELSLR 516
Cdd:COG1196 277 EELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 517 RGEIEELQHCLLQsgpppaDHPEAAETLRLRERLLSASKEHQDDSTLLQDKYEHMLKTYQTEVDKLRAANEKYAQEVADL 596
Cdd:COG1196 357 EAELAEAEEALLE------AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEAL 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 597 KAKVQQATTEnmglmdnwKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKALVEGIKMEHQLELgNLQAKHDLET 676
Cdd:COG1196 431 AELEEEEEEE--------EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA-RLLLLLEAEA 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 677 AMHGKEKEGLRQKLQEVQEELAG---LQQHWREQLEEQAAASAEAQEAQDQCRDAQLRVQELEGLDVEYRGQAQAIEFLK 753
Cdd:COG1196 502 DYEGFLEGVKAALLLAGLRGLAGavaVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDK 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 754 EQISLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAEN----RLQAAESLCSAQHSHVIESSDLSEETIRMKETVEGLQ 829
Cdd:COG1196 582 IRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDtllgRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGS 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 830 DKLNKRDKEVTALTSQMDMLRAQVSVLENKCKSGEKKIDSLLKEKRRLEAELEAVSRKTHDASGQLVHISQELLRKERSL 909
Cdd:COG1196 662 LTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEEL 741
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 3850794 910 NELRVLLLEANRHSPGPERDLsrevhkAEWRIKEQKLKDDIRGL 953
Cdd:COG1196 742 LEEEELLEEEALEELPEPPDL------EELERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
358-1014 |
2.43e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 81.26 E-value: 2.43e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 358 LQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEqyvaEAEEKLQRARLLVENVRKEKVDLSNQLE 437
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELE----ELEAELEELESRLEELEEQLETLRSKVA 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 438 EERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLllEKAQAERLLRELADNRLTTVAEKSRVLQLEEELSLRR 517
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL--EEAELKELQAELEELEEELEELQEELERLEEALEELR 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 518 GEIEELQHCLLQSGpppADHPEAAETLRLRERLLSA-SKEHQDDSTLLQDKyeHMLKTYQTEVDKLRAANEKYAQEV-AD 595
Cdd:TIGR02168 468 EELEEAEQALDAAE---RELAQLQARLDSLERLQENlEGFSEGVKALLKNQ--SGLSGILGVLSELISVDEGYEAAIeAA 542
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 596 LKAKVQQAttenmgLMDNWKSKLDSLASDHQKS--------LEDLKATLNSGPGAQ--QKEIGELKALVEGIKMEHQLE- 664
Cdd:TIGR02168 543 LGGRLQAV------VVENLNAAKKAIAFLKQNElgrvtflpLDSIKGTEIQGNDREilKNIEGFLGVAKDLVKFDPKLRk 616
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 665 -----LGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGlqQHWReqleeqAAASAEAQEAQDQCRDAQLR--VQELEG 737
Cdd:TIGR02168 617 alsylLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVR--PGGV------ITGGSAKTNSSILERRREIEelEEKIEE 688
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 738 LDVEYRGQAQAIEFLKEQISLAEKkmlDYEMLQRAEAQSRQEAERLREKLLVAENRLQAAESLCSAQHSHVIES------ 811
Cdd:TIGR02168 689 LEEKIAELEKALAELRKELEELEE---ELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELeaeiee 765
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 812 -----SDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSVLENKCKSGEKKIDSLLKEKRRLEAELEAVSR 886
Cdd:TIGR02168 766 leerlEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEE 845
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 887 KTHDASGQLVHISQELLRKERSLNELRVLL---------LEANRHSPGPERD-LSREVHKAEWRIKEqkLKDDIRGLREK 956
Cdd:TIGR02168 846 QIEELSEDIESLAAEIEELEELIEELESELeallnerasLEEALALLRSELEeLSEELRELESKRSE--LRRELEELREK 923
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 3850794 957 LTGLDKEKSLSEQRRYSLIDPASPPELLKLQHQLVSTEDALRDALNQAQQVERLVEAL 1014
Cdd:TIGR02168 924 LAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
220-280 |
2.79e-15 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 80.50 E-value: 2.79e-15
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 3850794 220 LHLGDRVLVGGTKtGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLF 280
Cdd:COG5244 4 LSVNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIF 63
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
358-999 |
3.37e-15 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 80.88 E-value: 3.37e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 358 LQEALKEKQQHIEQLLAERDLERAEVAKATSH--------ICEVEKEIALLKAQ---HEQYVAEAEEKLQRARLLVENVR 426
Cdd:TIGR02169 256 LTEEISELEKRLEEIEQLLEELNKKIKDLGEEeqlrvkekIGELEAEIASLERSiaeKERELEDAEERLAKLEAEIDKLL 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 427 KEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLL-----LEKAQAER--LLRELADNRLTT 499
Cdd:TIGR02169 336 AEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKdyrekLEKLKREIneLKRELDRLQEEL 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 500 VAEKSRVLQLEEELSLRRGEIEELQHCLLQSgpppADHPEAAET--LRLRERLLSASKEHQDDSTLLqDKYEHMLKTYQT 577
Cdd:TIGR02169 416 QRLSEELADLNAAIAGIEAKINELEEEKEDK----ALEIKKQEWklEQLAADLSKYEQELYDLKEEY-DRVEKELSKLQR 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 578 EVDKLRAANEKYAQEVADLKAKVQQATTENMGL-------------------------MDNWKSKLDSLASDHQKSLEDL 632
Cdd:TIGR02169 491 ELAEAEAQARASEERVRGGRAVEEVLKASIQGVhgtvaqlgsvgeryataievaagnrLNNVVVEDDAVAKEAIELLKRR 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 633 KAT------LN-----SGPGAQQKEIGELKALVEGIKMEHQLE------LGNLQAKHDLETA-----------MHGK--E 682
Cdd:TIGR02169 571 KAGratflpLNkmrdeRRDLSILSEDGVIGFAVDLVEFDPKYEpafkyvFGDTLVVEDIEAArrlmgkyrmvtLEGElfE 650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 683 KEG-------------------------LRQKLQEVQEELAGLQQHWREQLEEQAAASAEAQEAQDQCRDAQLRVQELEG 737
Cdd:TIGR02169 651 KSGamtggsraprggilfsrsepaelqrLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQ 730
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 738 ldvEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAENRLQAAESLCSAQHShVIESSDLSEE 817
Cdd:TIGR02169 731 ---EEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEI-QAELSKLEEE 806
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 818 TIRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSVLENKCKSGEKKIDSLLKEKRRLEAELEAVSRKTHDASGQLVH 897
Cdd:TIGR02169 807 VSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD 886
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 898 ISQELLRKERSLNELRVllleanrhspgPERDLSREVHKAEWRIKEQKLKDDIrgLREKLTGLDKEKSLSEQrrysliDP 977
Cdd:TIGR02169 887 LKKERDELEAQLRELER-----------KIEELEAQIEKKRKRLSELKAKLEA--LEEELSEIEDPKGEDEE------IP 947
|
730 740
....*....|....*....|..
gi 3850794 978 ASPPELLKLQHQLVSTEDALRD 999
Cdd:TIGR02169 948 EEELSLEDVQAELQRVEEEIRA 969
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
356-1015 |
6.67e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 76.63 E-value: 6.67e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 356 IALQEALKEKQ-----QHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQ---YVAEAEEKLQRARLLVENVRK 427
Cdd:TIGR02168 216 KELKAELRELElallvLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEElrlEVSELEEEIEELQKELYALAN 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 428 EKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVL 507
Cdd:TIGR02168 296 EISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLE 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 508 QLEEELSLRRGEIEELQHCLLQsgpppadhpEAAETLRLRERL----LSASKEHQDDSTLLQDKYEHMLKTYQTEVDKLR 583
Cdd:TIGR02168 376 ELEEQLETLRSKVAQLELQIAS---------LNNEIERLEARLerleDRRERLQQEIEELLKKLEEAELKELQAELEELE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 584 AANEKYAQEVADL---KAKVQQATTENMGLMDNWKSKLDSLASdHQKSLEDLKATLnSGPGAQQKEI--------GELKA 652
Cdd:TIGR02168 447 EELEELQEELERLeeaLEELREELEEAEQALDAAERELAQLQA-RLDSLERLQENL-EGFSEGVKALlknqsglsGILGV 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 653 LVEGIKMEHQLEL-------GNLQA--KHDLETAMHG-----KEKEGLRQKLQEVQEELAGLQQHWREQLEEQAAASAEA 718
Cdd:TIGR02168 525 LSELISVDEGYEAaieaalgGRLQAvvVENLNAAKKAiaflkQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVA 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 719 QEAQDQCRDAQLRVQELEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYEML--------QRAEAQS-----RQEAERLRE 785
Cdd:TIGR02168 605 KDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVrpggvitgGSAKTNSsilerRREIEELEE 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 786 KLLVAENRL----QAAESLCSAQHSHVIESSDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSVLENKCK 861
Cdd:TIGR02168 685 KIEELEEKIaeleKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE 764
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 862 SGEKKIDSLLKEKRRLEAELEAVSRKTHDASGQLVHISQELLRKERSLNELRVLLLEANRHSPGPER---DLSREVHKAE 938
Cdd:TIGR02168 765 ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERriaATERRLEDLE 844
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 939 WRIKEQ------------KLKDDIRGLREKLTGLDKEKSLSEQRRYSLIDpasppELLKLQHQLVSTEDALRDALNQAQQ 1006
Cdd:TIGR02168 845 EQIEELsedieslaaeieELEELIEELESELEALLNERASLEEALALLRS-----ELEELSEELRELESKRSELRRELEE 919
|
....*....
gi 3850794 1007 VERLVEALR 1015
Cdd:TIGR02168 920 LREKLAQLE 928
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
362-910 |
1.32e-13 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 75.54 E-value: 1.32e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 362 LKEKQQHIEQLLAERDLE------RAEVAKATSHICEVEKEIALLKA--QHEQYVAEAEEKLQRARLLVENVRKEKVDLS 433
Cdd:pfam15921 262 LQQHQDRIEQLISEHEVEitglteKASSARSQANSIQSQLEIIQEQArnQNSMYMRQLSDLESTVSQLRSELREAKRMYE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 434 NQLEEERRKV-----EDLQFRVEEESITK--GDLETQTQLEHARIGELEQSLLLEKAQAERL-------------LRELA 493
Cdd:pfam15921 342 DKIEELEKQLvlansELTEARTERDQFSQesGNLDDQLQKLLADLHKREKELSLEKEQNKRLwdrdtgnsitidhLRREL 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 494 DNRLTTVAEKSRVL---------QLEEELSLRRGEIEELQhcllQSGPPPADHPEAAETLRLRERLLSASKEHQDDS--- 561
Cdd:pfam15921 422 DDRNMEVQRLEALLkamksecqgQMERQMAAIQGKNESLE----KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSert 497
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 562 -----TLLQDKyEHMLKTYQTEVDKLRAANEKYAQEVADLKAKVQ-----QATTENMGLMDNWKSKLDSLASDHQKSLED 631
Cdd:pfam15921 498 vsdltASLQEK-ERAIEATNAEITKLRSRVDLKLQELQHLKNEGDhlrnvQTECEALKLQMAEKDKVIEILRQQIENMTQ 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 632 LKATLNSGPGAQQKEIGELKALVEGIKMEHQlELGNLQAKHDletamhGKEKEgLRQKLQEVQEELAGLQQHWREQLEEq 711
Cdd:pfam15921 577 LVGQHGRTAGAMQVEKAQLEKEINDRRLELQ-EFKILKDKKD------AKIRE-LEARVSDLELEKVKLVNAGSERLRA- 647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 712 aaasaeaqeaqdqCRDAQlrvQELEGLDVEYRGQAQAIEFLKEqislaekkmlDYEMLQRAEAQSRQEAERLREKLlvaE 791
Cdd:pfam15921 648 -------------VKDIK---QERDQLLNEVKTSRNELNSLSE----------DYEVLKRNFRNKSEEMETTTNKL---K 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 792 NRLQAAESLCSAQHSHV--IESSDLSEETIRMketveGLQdklnkrdKEVTALTSQMDMLRAQVSVLENKCKSGEKKIDS 869
Cdd:pfam15921 699 MQLKSAQSELEQTRNTLksMEGSDGHAMKVAM-----GMQ-------KQITAKRGQIDALQSKIQFLEEAMTNANKEKHF 766
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 3850794 870 LLKEKRRLEAELEAVSRKTHDASGQL-VHISQELLRKERSLN 910
Cdd:pfam15921 767 LKEEKNKLSQELSTVATEKNKMAGELeVLRSQERRLKEKVAN 808
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
82-143 |
2.19e-13 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 74.34 E-value: 2.19e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 3850794 82 VGERVWVNGVKpGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGAVRYFECPALQGIFTRP 143
Cdd:COG5244 6 VNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRP 66
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
357-885 |
7.40e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.05 E-value: 7.40e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 357 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQY---VAEAEEKLQRARLLVENVRKEKVDLS 433
Cdd:COG1196 285 EAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELeeeLEELEEELEEAEEELEEAEAELAEAE 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 434 NQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEEL 513
Cdd:COG1196 365 EALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEAL 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 514 SLRRGEIEELQHcllqsgpppadhpEAAETLRLRERLLSASKEHQDDSTLLQDKYEHMLKTYQTEVDKLRAANEKYAQEV 593
Cdd:COG1196 445 EEAAEEEAELEE-------------EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVK 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 594 ADLKAKVQQATTENMGLMDNWKSKLDSLASDHQKSLEDLKATLNSGPGAQQkeIGELKALVEGIKMEHQLEL--GNLQAK 671
Cdd:COG1196 512 AALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAA--IEYLKAAKAGRATFLPLDKirARAALA 589
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 672 HDLETAMHGKEKEGLRQKLQEVQEELAGLQQHWREQLEEQAAASAEAQEAQDqcRDAQLRVQELEGLDVEYRGQAQAIEF 751
Cdd:COG1196 590 AALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVT--LAGRLREVTLEGEGGSAGGSLTGGSR 667
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 752 LKEQISLAEKKmldyEMLQRAEAQSRQEAERLREKLLVAENRLQAAESLCSAQHSHVIESSDLSEETIRMKETVEGLQDK 831
Cdd:COG1196 668 RELLAALLEAE----AELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLE 743
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 3850794 832 LNKRDKEVTALTSQMDMLRAQVsvlenkcksgEKKIDSLLKEKRRLEA-------ELEAVS 885
Cdd:COG1196 744 EEELLEEEALEELPEPPDLEEL----------ERELERLEREIEALGPvnllaieEYEELE 794
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
332-667 |
7.75e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.70 E-value: 7.75e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 332 GGPASRSGLLTETSSRYARKISGTIALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQ---HEQYV 408
Cdd:TIGR02168 663 GGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDlarLEAEV 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 409 AEAEEKLQRARLLVENVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERL 488
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 489 LRELADNRLTTVAEKSRVLQLEEELSLRRGEIEELQHCLLQSGPPPADHPEAAETL-RLRERLLSASKEHQDDSTLLQDK 567
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALlNERASLEEALALLRSELEELSEE 902
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 568 yehmLKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTENMGLmdnwkskLDSLASDHQKSLEDLKATLNSGPGAQQKEI 647
Cdd:TIGR02168 903 ----LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNL-------QERLSEEYSLTLEEAEALENKIEDDEEEAR 971
|
330 340
....*....|....*....|
gi 3850794 648 GELKALVEGIKmehqlELGN 667
Cdd:TIGR02168 972 RRLKRLENKIK-----ELGP 986
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
341-842 |
5.33e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.88 E-value: 5.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 341 LTETSSRYARKISGTIALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQheqyVAEAEEKLQRARL 420
Cdd:COG1196 290 EYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEE----LEEAEAELAEAEE 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 421 LVENVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTV 500
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 501 AEKSRVLQLEEELSLRRGEIEELQhcllqsgpppADHPEAAETLRLRERLLSASKEHQDDSTLLQDKYEHMLKT--YQTE 578
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELL----------EEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGvkAALL 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 579 VDKLRAANEKYAQEVADLKAKVQQATTENMGLMDNWKSKLDSLASDHQKSLEDLKAT------LNSGPGAQQKEIGELKA 652
Cdd:COG1196 516 LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGratflpLDKIRARAALAAALARG 595
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 653 LVEGIKMEHQLELGNLQAKHDLETAmHGKEKEGLRQKLQEVQEELAGLQQHWREQLEEQAAASAEAQEAQDQCRDAQLRV 732
Cdd:COG1196 596 AIGAAVDLVASDLREADARYYVLGD-TLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAAL 674
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 733 QELEGLDveyrgQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAENRLQAAESLCSAQHSHVIESS 812
Cdd:COG1196 675 LEAEAEL-----EELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLE 749
|
490 500 510
....*....|....*....|....*....|
gi 3850794 813 DLSEETIRMKETVEGLQDKLNKRDKEVTAL 842
Cdd:COG1196 750 EEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
745-1016 |
1.07e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 1.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 745 QAQAIEFLKEQISLAEKKML--DYEMLQRAEAQSRQEAERLREKLLVAENRLQAAESlcsaqhshviESSDLSEETIRMK 822
Cdd:TIGR02168 211 KAERYKELKAELRELELALLvlRLEELREELEELQEELKEAEEELEELTAELQELEE----------KLEELRLEVSELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 823 ETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSVLENKCKSGEKKIDSLLKEKRRLEAELEAVSRKTHDASGQLVHISQEL 902
Cdd:TIGR02168 281 EEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 903 LRKERSLNELRVLLLEANRHSpgpeRDLSREVHKAEwrIKEQKLKDDIRGLREKLTGLDKEKSLSEQRRYSLIDPASPPE 982
Cdd:TIGR02168 361 EELEAELEELESRLEELEEQL----ETLRSKVAQLE--LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE 434
|
250 260 270
....*....|....*....|....*....|....
gi 3850794 983 LLKLQHQLVSTEDALRDALNQAQQVERLVEALRG 1016
Cdd:TIGR02168 435 LKELQAELEELEEELEELQEELERLEEALEELRE 468
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
357-1009 |
2.33e-09 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 61.66 E-value: 2.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 357 ALQEaLKEKQQHIEQLLAERDLERAEVAK---ATSHICEVEKEIAllkaqheqyvAEAEEKLQRARLLVENVRKEKVDLS 433
Cdd:pfam05483 121 AIQE-LQFENEKVSLKLEEEIQENKDLIKennATRHLCNLLKETC----------ARSAEKTKKYEYEREETRQVYMDLN 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 434 NQLEEERRKVEDLQFRVEEESItkgDLETQTQLEHARIGELEQSLLLE----KAQAERLLRELADNR-----LTTVAEKS 504
Cdd:pfam05483 190 NNIEKMILAFEELRVQAENARL---EMHFKLKEDHEKIQHLEEEYKKEindkEKQVSLLLIQITEKEnkmkdLTFLLEES 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 505 R--VLQLEEELSLRRGEIEEL---QHCLLQsgpppadhpEAAETLRLRERLLSASKEHQDDSTLLQDKYEHMLKTYQTEV 579
Cdd:pfam05483 267 RdkANQLEEKTKLQDENLKELiekKDHLTK---------ELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQM 337
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 580 DKLRAANEKYAQEVADLKAKV----QQATTENMGLMDNWKS----------------KLDSLASDHQKSLEDLKATLnsg 639
Cdd:pfam05483 338 EELNKAKAAHSFVVTEFEATTcsleELLRTEQQRLEKNEDQlkiitmelqkksseleEMTKFKNNKEVELEELKKIL--- 414
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 640 pGAQQK---EIGELKALVEGIKMEHQLELGNLQAK----HDLE---TAMHGKEKEGLRQkLQEVQEELAglqqhwREQLE 709
Cdd:pfam05483 415 -AEDEKlldEKKQFEKIAEELKGKEQELIFLLQARekeiHDLEiqlTAIKTSEEHYLKE-VEDLKTELE------KEKLK 486
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 710 EQAAASAEAQEAQDQcrdaQLRVQELEGLDVEYRGQAQAIEFLKEQislaEKKML-DYEMLQRAEAQSRQEAERLREKLl 788
Cdd:pfam05483 487 NIELTAHCDKLLLEN----KELTQEASDMTLELKKHQEDIINCKKQ----EERMLkQIENLEEKEMNLRDELESVREEF- 557
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 789 vaenRLQAAESLCSAQHSHViESSDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSVLENKCKSGEKKID 868
Cdd:pfam05483 558 ----IQKGDEVKCKLDKSEE-NARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLN 632
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 869 SLLKEKRRLEAELEAVSRK------THDASGQLVHISQELLRKErsLNELRVLLLEANRHSpgPERDLSREVHKAEWRIK 942
Cdd:pfam05483 633 AYEIKVNKLELELASAKQKfeeiidNYQKEIEDKKISEEKLLEE--VEKAKAIADEAVKLQ--KEIDKRCQHKIAEMVAL 708
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 943 EQKLK---DDIRGLREKLTGLDKEKslsEQRRYSLiDPASPPELLKLQHQLVSTEDALRDALNQAQQVER 1009
Cdd:pfam05483 709 MEKHKhqyDKIIEERDSELGLYKNK---EQEQSSA-KAALEIELSNIKAELLSLKKQLEIEKEEKEKLKM 774
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
392-887 |
1.04e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 59.40 E-value: 1.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 392 EVEKEIALLKAQHEQYvAEAEEKLQRARLLVENVRKEKvdlsNQLEEERRKVEDLQfrveeesitkgdletQTQLEHARI 471
Cdd:COG4717 75 ELEEELKEAEEKEEEY-AELQEELEELEEELEELEAEL----EELREELEKLEKLL---------------QLLPLYQEL 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 472 GELEQSLLLEKAQAERLLRELAdnrlttvaeksRVLQLEEELSLRRGEIEELQHCLlqsgpppaDHPEAAETLRLRERLL 551
Cdd:COG4717 135 EALEAELAELPERLEELEERLE-----------ELRELEEELEELEAELAELQEEL--------EELLEQLSLATEEELQ 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 552 SASKEHQDdstlLQDKyehmLKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTENMGLMDNWKSKLDSLASDHQKSLED 631
Cdd:COG4717 196 DLAEELEE----LQQR----LAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGS 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 632 LKATLNSGPGAQQKEIGeLKALVEGIKMEHQLELGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGLQQHWREQLeeq 711
Cdd:COG4717 268 LLSLILTIAGVLFLVLG-LLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELL--- 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 712 aaasaeaqeaqDQCRDAQLRVQELEGLDVEYRGQAQAIEFlkeQISLAEKKMLDYEMLQRAEAQSrQEAERLREKLLVAE 791
Cdd:COG4717 344 -----------DRIEELQELLREAEELEEELQLEELEQEI---AALLAEAGVEDEEELRAALEQA-EEYQELKEELEELE 408
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 792 NRLQAAESLCSAQHSHVIESsdlseetiRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSVLENkcksgEKKIDSLL 871
Cdd:COG4717 409 EQLEELLGELEELLEALDEE--------ELEEELEELEEELEELEEELEELREELAELEAELEQLEE-----DGELAELL 475
|
490
....*....|....*.
gi 3850794 872 KEKRRLEAELEAVSRK 887
Cdd:COG4717 476 QELEELKAELRELAEE 491
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
691-1016 |
5.16e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 5.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 691 QEVQEELaglqqhwREqleeqaaasaeaqeaqdqcRDAQLRVQELEGLDVEYRGQAQAIEFLKEQIslaekkmldyEMLQ 770
Cdd:COG1196 216 RELKEEL-------KE-------------------LEAELLLLKLRELEAELEELEAELEELEAEL----------EELE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 771 RAEAQSRQEAERLREKLLVAENRLQAAEslcSAQHSHVIESSDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQMDMLR 850
Cdd:COG1196 260 AELAELEAELEELRLELEELELELEEAQ---AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELE 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 851 AQVSVLENKCKSGEKKIDSLLKEKRRLEAELEAVSRKTHDASGQLVHISQELLRKERSLNELRVLLLEANRhspgpeRDL 930
Cdd:COG1196 337 EELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE------AEE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 931 SREVHKAEWRIKEQKLKDDIRGLREKLtgLDKEKSLSEQRRyslidpasppELLKLQHQLVSTEDALRDALNQAQQVERL 1010
Cdd:COG1196 411 ALLERLERLEEELEELEEALAELEEEE--EEEEEALEEAAE----------EEAELEEEEEALLELLAELLEEAALLEAA 478
|
....*.
gi 3850794 1011 VEALRG 1016
Cdd:COG1196 479 LAELLE 484
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
410-1016 |
6.22e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 6.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 410 EAEEKLQRARllvENVRKekvdLSNQLEEERRKVEDLQFRVEeesITKGDLETQTQLEHARIGELEQSLLLEKAQAERLL 489
Cdd:TIGR02168 176 ETERKLERTR---ENLDR----LEDILNELERQLKSLERQAE---KAERYKELKAELRELELALLVLRLEELREELEELQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 490 RELADNRLTTVAEKSRVLQLEEELSLRRGE-------IEELQHCLLQSGpppadhpEAAETLRLRERLLSASKEHQDDSt 562
Cdd:TIGR02168 246 EELKEAEEELEELTAELQELEEKLEELRLEvseleeeIEELQKELYALA-------NEISRLEQQKQILRERLANLERQ- 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 563 llqdkyehmLKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTENMGL---MDNWKSKLDSLAS---DHQKSLEDLK--- 633
Cdd:TIGR02168 318 ---------LEELEAQLEELESKLDELAEELAELEEKLEELKEELESLeaeLEELEAELEELESrleELEEQLETLRskv 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 634 ATLNSGPGAQQKEIGELKALVEGIKMEHQlelGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGLQQHW---REQLEE 710
Cdd:TIGR02168 389 AQLELQIASLNNEIERLEARLERLEDRRE---RLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELerlEEALEE 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 711 QAAASAEAQEAQDQCRD----AQLRVQELEGLDVEYRGQAQAIEFLK--------------EQISLAEK----------- 761
Cdd:TIGR02168 466 LREELEEAEQALDAAERelaqLQARLDSLERLQENLEGFSEGVKALLknqsglsgilgvlsELISVDEGyeaaieaalgg 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 762 KMLDYEMlqRAEAQSRQEAERLREKLL----------VAENRLQAAESLCSAQHSHVIESSDLSEET------------- 818
Cdd:TIGR02168 546 RLQAVVV--ENLNAAKKAIAFLKQNELgrvtflpldsIKGTEIQGNDREILKNIEGFLGVAKDLVKFdpklrkalsyllg 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 819 -IRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSVLenkcKSGEKKIDSLL---KEKRRLEAELEAVSRKTHDASGQ 894
Cdd:TIGR02168 624 gVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVIT----GGSAKTNSSILerrREIEELEEKIEELEEKIAELEKA 699
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 895 LVHISQELLRKERSLNELRVLLLEANRHSPGPERDLSREvhkaewRIKEQKLKDDIRGLREKLTGLDKEKSLSEQRRYSL 974
Cdd:TIGR02168 700 LAELRKELEELEEELEQLRKELEELSRQISALRKDLARL------EAEVEQLEERIAQLSKELTELEAEIEELEERLEEA 773
|
650 660 670 680
....*....|....*....|....*....|....*....|..
gi 3850794 975 idpasPPELLKLQHQLVSTEDALRDALNQAQQVERLVEALRG 1016
Cdd:TIGR02168 774 -----EEELAEAEAEIEELEAQIEQLKEELKALREALDELRA 810
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
544-887 |
1.29e-07 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 55.90 E-value: 1.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 544 LRLRERLLSASKEHQDDSTLLQDKYEHMLKTYQTEVDKLRA--ANEKYAQEVADLKAKVQQATTENMGLMDNWKSKLDSL 621
Cdd:pfam05557 12 SQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQElqKRIRLLEKREAEAEEALREQAELNRLKKKYLEALNKK 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 622 ASDHQKSLEDLKATLNsgpgAQQKEIGELKALVEGIKMEHQ---LELGNLQAKHDLETAmHGKEKEGLRQKLQEVQEELA 698
Cdd:pfam05557 92 LNEKESQLADAREVIS----CLKNELSELRRQIQRAELELQstnSELEELQERLDLLKA-KASEAEQLRQNLEKQQSSLA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 699 GLQQHWREqLEEQAAASAEAQEAQDQCRDAQLRVQELEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQ 778
Cdd:pfam05557 167 EAEQRIKE-LEFEIQSQEQDSEIVKNSKSELARIPELEKELERLREHNKHLNENIENKLLLKEEVEDLKRKLEREEKYRE 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 779 EAERLREKLLVAENRLQAAESLCSAQHSHVIESSDLSEETIRMketvegLQDKLNKRDkEVTALTSQMDMLRAQVSVLEN 858
Cdd:pfam05557 246 EAATLELEKEKLEQELQSWVKLAQDTGLNLRSPEDLSRRIEQL------QQREIVLKE-ENSSLTSSARQLEKARRELEQ 318
|
330 340
....*....|....*....|....*....
gi 3850794 859 KCKSGEKKIDSLLKEKRRLEAELEAVSRK 887
Cdd:pfam05557 319 ELAQYLKKIEDLNKKLKRHKALVRRLQRR 347
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
337-700 |
1.47e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 1.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 337 RSGLLTETSSRYARKISGTIALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQ 416
Cdd:TIGR02169 651 KSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQ 730
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 417 RARLLVEnvrkekvdlsnQLEEERRKVEDLQFRVEEESITKGDLEtqtqlehARIGELEQSLLLEKAQAERLLRELADNR 496
Cdd:TIGR02169 731 EEEKLKE-----------RLEELEEDLSSLEQEIENVKSELKELE-------ARIEELEEDLHKLEEALNDLEARLSHSR 792
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 497 LTTVAEKSRvlQLEEELSLRRGEIEELQHCLlqsgpppadhpeaaETLRLRERLLSASKEH-QDDSTLLQDKyehmLKTY 575
Cdd:TIGR02169 793 IPEIQAELS--KLEEEVSRIEARLREIEQKL--------------NRLTLEKEYLEKEIQElQEQRIDLKEQ----IKSI 852
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 576 QTEVDKLRAANEKYAQEVADLKAKVQQattenmglmdnwkskLDSLASDHQKSLEDLKATLnsgpGAQQKEIGELKALVE 655
Cdd:TIGR02169 853 EKEIENLNGKKEELEEELEELEAALRD---------------LESRLGDLKKERDELEAQL----RELERKIEELEAQIE 913
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 3850794 656 gIKMEHQLEL-GNLQAKHDLETAMHGKEKEG------------LRQKLQEVQEELAGL 700
Cdd:TIGR02169 914 -KKRKRLSELkAKLEALEEELSEIEDPKGEDeeipeeelsledVQAELQRVEEEIRAL 970
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
408-974 |
1.49e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 1.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 408 VAEAEEKLQRARLLVENVRK----------EKVDLSNQLEEERRKVE---DLQFRVEEESIT-----KGDLETQTQLEHA 469
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEEnierldliidEKRQQLERLRREREKAEryqALLKEKREYEGYellkeKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 470 RIGELEQSLLLEKAQAERLLRELA--DNRLTTVAEKSRVLQLEEELSLRRgEIEELQHCLLQSGPPPADHPEAAETLRLR 547
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEKRLEeiEQLLEELNKKIKDLGEEEQLRVKE-KIGELEAEIASLERSIAEKERELEDAEER 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 548 ERLLsaskEHQDDSTLLQ-DKYEHMLKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTENmglmDNWKSKLDSLasdhQ 626
Cdd:TIGR02169 324 LAKL----EAEIDKLLAEiEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEF----AETRDELKDY----R 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 627 KSLEDLKATLNSGPGAQQK----------EIGELKALVEGIKMEH----------QLEL----GNL-QAKHDLETAMhgK 681
Cdd:TIGR02169 392 EKLEKLKREINELKRELDRlqeelqrlseELADLNAAIAGIEAKIneleeekedkALEIkkqeWKLeQLAADLSKYE--Q 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 682 EKEGLRQKLQEVQEELAGLQQhwreQLEEQAAASAEAQEAQDQCRDAQL-----------RVQELEGLDVEYRGQ----- 745
Cdd:TIGR02169 470 ELYDLKEEYDRVEKELSKLQR----ELAEAEAQARASEERVRGGRAVEEvlkasiqgvhgTVAQLGSVGERYATAievaa 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 746 ---------------AQAIEFLKE-QIS-------------------LAEKKMLDY-----EMLQRAEA----------- 774
Cdd:TIGR02169 546 gnrlnnvvveddavaKEAIELLKRrKAGratflplnkmrderrdlsiLSEDGVIGFavdlvEFDPKYEPafkyvfgdtlv 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 775 -QSRQEAERL--REKLLVAENRL-----------QAAESLCSAQHSHVIESSDLSEETIRMKETVEGLQDKLNKRDKEVT 840
Cdd:TIGR02169 626 vEDIEAARRLmgKYRMVTLEGELfeksgamtggsRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLD 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 841 ALTSQMDMLRAQVSVLENKCKSGEKKIDSLLKEKRRLEAELEAVSRKTHDASGQLVHISQELLRKERSLNELRVLLLEan 920
Cdd:TIGR02169 706 ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALND-- 783
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 3850794 921 rhspgPERDLSREvhkaEWRIKE---QKLKDDIRGLREKLTGLDKEKSLSEQRRYSL 974
Cdd:TIGR02169 784 -----LEARLSHS----RIPEIQaelSKLEEEVSRIEARLREIEQKLNRLTLEKEYL 831
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
350-695 |
2.54e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 2.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 350 RKISGTIALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEialLKAQHEQYVAEAEEKLQRARLL-VENVRKE 428
Cdd:PTZ00121 1558 KKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEE---KKMKAEEAKKAEEAKIKAEELKkAEEEKKK 1634
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 429 KVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLT------TVAE 502
Cdd:PTZ00121 1635 VEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAeelkkkEAEE 1714
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 503 KSRVLQLEEELSLRRGEIEELQHcllqsgpPPADHPEAAETLRLRE----RLLSASKEHQDDSTLLQDKYEHMLKTYQTE 578
Cdd:PTZ00121 1715 KKKAEELKKAEEENKIKAEEAKK-------EAEEDKKKAEEAKKDEeekkKIAHLKKEEEKKAEEIRKEKEAVIEEELDE 1787
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 579 VD-KLRAANEKYAQEVADLKAKVQQATTENMGLMDNWKSKLDSlasdhqkSLEDLKATLNSgpgaQQKEIGELKalvegi 657
Cdd:PTZ00121 1788 EDeKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDS-------AIKEVADSKNM----QLEEADAFE------ 1850
|
330 340 350
....*....|....*....|....*....|....*...
gi 3850794 658 kmEHQLELGNLQAKHDLETAMHGKEKEGLRQKLQEVQE 695
Cdd:PTZ00121 1851 --KHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEE 1886
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
405-603 |
3.14e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 54.64 E-value: 3.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 405 EQYVAE-AEEKLQRARLLVENVRKEKVDLSNQLEEERRKVEDlqFRVEEESItkgDLETQTQLEHARIGELEQSLL---L 480
Cdd:COG3206 159 EAYLEQnLELRREEARKALEFLEEQLPELRKELEEAEAALEE--FRQKNGLV---DLSEEAKLLLQQLSELESQLAearA 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 481 EKAQAERLLRELAD------NRLTTVAEKSRVLQLEEELSLRRGEIEELqhcLLQSGPppaDHPEAAETLRLRERLLSas 554
Cdd:COG3206 234 ELAEAEARLAALRAqlgsgpDALPELLQSPVIQQLRAQLAELEAELAEL---SARYTP---NHPDVIALRAQIAALRA-- 305
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 3850794 555 kehqddstLLQDKYEHMLKTYQTEVDKLRAANEKYAQEVADLKAKVQQA 603
Cdd:COG3206 306 --------QLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAEL 346
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
412-954 |
5.49e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.97 E-value: 5.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 412 EEKLQRARLLVENVRKEKVDlsNQLEEERRKVEDLQFRVEEESitkgdletqtQLEHARIGELEQSLLlekaQAERLLRE 491
Cdd:pfam15921 58 EVELDSPRKIIAYPGKEHIE--RVLEEYSHQVKDLQRRLNESN----------ELHEKQKFYLRQSVI----DLQTKLQE 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 492 LADNRLTTVAEKSRVLQLEEELslrRGEIEELQHCLlqsgpppadhpEAAETLRlrerllsaskehqddstllqdkyEHM 571
Cdd:pfam15921 122 MQMERDAMADIRRRESQSQEDL---RNQLQNTVHEL-----------EAAKCLK-----------------------EDM 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 572 LKTYQTEVDKLRA---ANEKYAQEVADLKAKVQQATTENMGLMDNWKS-KLDSLASDHQKSLEDLKATLNSGPGAQQKEI 647
Cdd:pfam15921 165 LEDSNTQIEQLRKmmlSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTmHFRSLGSAISKILRELDTEISYLKGRIFPVE 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 648 GELKAL-------VEGIKMEHQLELGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGLQQHWREQLEEQAAASAEAQE 720
Cdd:pfam15921 245 DQLEALksesqnkIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLES 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 721 AQDQCRdAQLRVQElegldveyRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAENRLQAAESL 800
Cdd:pfam15921 325 TVSQLR-SELREAK--------RMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSL 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 801 CSAQHSHviessdLSEETIRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQVS-VLENKCKSGEKKIDSLLKEKrRLEA 879
Cdd:pfam15921 396 EKEQNKR------LWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQgQMERQMAAIQGKNESLEKVS-SLTA 468
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 3850794 880 ELEAVSRKTHDASGQLVHISQELLRKERSLNELRVLLLEANRHSPGPERDLSREVHKAEWRIKE-QKLKDDIRGLR 954
Cdd:pfam15921 469 QLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQElQHLKNEGDHLR 544
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
349-914 |
7.29e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.61 E-value: 7.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 349 ARKISGTIALQEALK--EKQQHIEQLLAERDLERAEVAKaTSHICEVEKEIALLKAQHEQYVAEAEEKlQRARLLVENVR 426
Cdd:PTZ00121 1223 AKKAEAVKKAEEAKKdaEEAKKAEEERNNEEIRKFEEAR-MAHFARRQAAIKAEEARKADELKKAEEK-KKADEAKKAEE 1300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 427 KEKVDLSNQLEEERRKVEDLQFRVEE------------ESITKGDlETQTQLEHARIGELEQSllLEKAQAERLLRELAD 494
Cdd:PTZ00121 1301 KKKADEAKKKAEEAKKADEAKKKAEEakkkadaakkkaEEAKKAA-EAAKAEAEAAADEAEAA--EEKAEAAEKKKEEAK 1377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 495 NRLTTVAEKSRVLQLEEELSLRRGEIEELQHCLLQSGPPPADHPEA---AETLRLRERLLSASKEHQdDSTLLQDKYEHM 571
Cdd:PTZ00121 1378 KKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAkkkAEEKKKADEAKKKAEEAK-KADEAKKKAEEA 1456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 572 LKTYQTEvdklRAANEKYAQEVADLKAKVQQATTENMGLMDNWKSKLDSL--ASDHQKSLEDLKATLNSGPGAQQKEIGE 649
Cdd:PTZ00121 1457 KKAEEAK----KKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAkkAAEAKKKADEAKKAEEAKKADEAKKAEE 1532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 650 LKALVEGIKMEHQLELGNLQAKHDLETAmhgKEKEGLRQKLQEVQEELAGLQ--QHWREQLEEQAAASAEAQEAQDQCRD 727
Cdd:PTZ00121 1533 AKKADEAKKAEEKKKADELKKAEELKKA---EEKKKAEEAKKAEEDKNMALRkaEEAKKAEEARIEEVMKLYEEEKKMKA 1609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 728 AQLRVQELEGLDVEYRGQAQAIEFLKEQISLAE-KKMLDYEMLQRAEAQSRQEAERLREKllvAENRLQAAESLCSAQHS 806
Cdd:PTZ00121 1610 EEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEaEEKKKAEELKKAEEENKIKAAEEAKK---AEEDKKKAEEAKKAEED 1686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 807 HVIESSDLSEETiRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSVLENKCKSGEKKIDSLLK---EKRRLEAELEA 883
Cdd:PTZ00121 1687 EKKAAEALKKEA-EEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKdeeEKKKIAHLKKE 1765
|
570 580 590
....*....|....*....|....*....|.
gi 3850794 884 VSRKTHDASGQLVHISQELLRKERSLNELRV 914
Cdd:PTZ00121 1766 EEKKAEEIRKEKEAVIEEELDEEDEKRRMEV 1796
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
346-972 |
8.56e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.14 E-value: 8.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 346 SRYARKISGTIALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEqyvaEAEEKLQRARLLVENV 425
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKE----EIEELEKELESLEGSK 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 426 RKEKVDLSN---QLEEERRKVEDLQFRVEEESITKGDLEtqtqlEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAE 502
Cdd:PRK03918 255 RKLEEKIREleeRIEELKKEIEELEEKVKELKELKEKAE-----EYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEER 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 503 KSRVLQLEEELSLRRGEIEELQHCLLQSGPppaDHPEAAETLRLRERLLSASKEHQDDSTllqDKYEHMLKtyqtevdKL 582
Cdd:PRK03918 330 IKELEEKEERLEELKKKLKELEKRLEELEE---RHELYEEAKAKKEELERLKKRLTGLTP---EKLEKELE-------EL 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 583 RAANEKYAQEVADLKAKvqqattenmglmdnwKSKLDSLASDHQKSLEDLKATLNSGPgAQQKEIGElkalvegikmEHQ 662
Cdd:PRK03918 397 EKAKEEIEEEISKITAR---------------IGELKKEIKELKKAIEELKKAKGKCP-VCGRELTE----------EHR 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 663 lelGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGLqqhwrEQLEEQAAASAEAQEAQDQCRDAQ-----LRVQELEG 737
Cdd:PRK03918 451 ---KELLEEYTAELKRIEKELKEIEEKERKLRKELREL-----EKVLKKESELIKLKELAEQLKELEeklkkYNLEELEK 522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 738 LDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAENRLQAAESLCSAQ-HSHVIESSDLSE 816
Cdd:PRK03918 523 KAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEElEERLKELEPFYN 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 817 ETIRMKETVEGLQDKLNKRDKEVTALtsqmDMLRAQVSVLENKCKSGEKKIDSLlkEKRRLEAELEAVSRKThdasgqlV 896
Cdd:PRK03918 603 EYLELKDAEKELEREEKELKKLEEEL----DKAFEELAETEKRLEELRKELEEL--EKKYSEEEYEELREEY-------L 669
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 897 HISQELLRKERSLNELRVLLLEANRHSpgpeRDLSREVHKAEWRIKE----QKLKDDIRGLREK---LTGLDKEKSLSEQ 969
Cdd:PRK03918 670 ELSRELAGLRAELEELEKRREEIKKTL----EKLKEELEEREKAKKEleklEKALERVEELREKvkkYKALLKERALSKV 745
|
...
gi 3850794 970 RRY 972
Cdd:PRK03918 746 GEI 748
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
350-1006 |
9.94e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 53.26 E-value: 9.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 350 RKISGTIA-LQEALKEKQQHIEQLLAERDLERAEVAKA-------TSHICEVEKEIALLKAQheqyVAEAEEKLQRARLL 421
Cdd:pfam01576 211 RKLEGESTdLQEQIAELQAQIAELRAQLAKKEEELQAAlarleeeTAQKNNALKKIRELEAQ----ISELQEDLESERAA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 422 VENVRKEKVDLSNQLEEERRKVED----------LQFRVEEE-SITKGDLETQTQLEHARIGELEQslllEKAQAERLLR 490
Cdd:pfam01576 287 RNKAEKQRRDLGEELEALKTELEDtldttaaqqeLRSKREQEvTELKKALEEETRSHEAQLQEMRQ----KHTQALEELT 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 491 ELADN--RLTTVAEKSRvLQLEEELSLRRGEIEelqhcLLQSGPPPADHPEAAETLRLRErLLSASKEHQDDSTLLQDKy 568
Cdd:pfam01576 363 EQLEQakRNKANLEKAK-QALESENAELQAELR-----TLQQAKQDSEHKRKKLEGQLQE-LQARLSESERQRAELAEK- 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 569 ehmLKTYQTEVDKLRAA-------NEKYAQEVADLKAKVQQATTEnmgLMDNWKSKLDslASDHQKSLEDLKATLNSgpg 641
Cdd:pfam01576 435 ---LSKLQSELESVSSLlneaegkNIKLSKDVSSLESQLQDTQEL---LQEETRQKLN--LSTRLRQLEDERNSLQE--- 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 642 aQQKEIGELKALVEGIKMEHQLELGNLQAKHDLETAMhgkeKEGLRQKLQEVQEELAGLQQHWREQleeqaaasaeaQEA 721
Cdd:pfam01576 504 -QLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGT----LEALEEGKKRLQRELEALTQQLEEK-----------AAA 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 722 QDQCRDAQLRVQ-ELEGLDVEYRGQAQAIEFL-KEQIS----LAEKKMLD---YEMLQRAEAQSR-------------QE 779
Cdd:pfam01576 568 YDKLEKTKNRLQqELDDLLVDLDHQRQLVSNLeKKQKKfdqmLAEEKAISaryAEERDRAEAEAReketralslaralEE 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 780 AERLREKLLVAENRLQAA-ESLCSAQ-----HSHVIESSDLSEETI--RMKETVEGLQDKLNKRDKEVTALTSQMDMLRA 851
Cdd:pfam01576 648 ALEAKEELERTNKQLRAEmEDLVSSKddvgkNVHELERSKRALEQQveEMKTQLEELEDELQATEDAKLRLEVNMQALKA 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 852 QVSV-LENKCKSGEKKIDSLLKEKRRLEAELEAVSRKthdaSGQLVHISQELlrkERSLNELRVLLLEANRhspGPERDL 930
Cdd:pfam01576 728 QFERdLQARDEQGEEKRRQLVKQVRELEAELEDERKQ----RAQAVAAKKKL---ELDLKELEAQIDAANK---GREEAV 797
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 3850794 931 sREVHKAEWRIKE-QKLKDDIRGLREKLTGLDKEkslSEQRRYSLidpasPPELLKLQHQLVSTEDALRdalnQAQQ 1006
Cdd:pfam01576 798 -KQLKKLQAQMKDlQRELEEARASRDEILAQSKE---SEKKLKNL-----EAELLQLQEDLAASERARR----QAQQ 861
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
363-885 |
3.05e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 51.33 E-value: 3.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 363 KEKQQHIEQLLAERDLERAEVAKATSHICEvekeiaLLKAQHEQYvAEAEEklQRARLL------------VENVRKEKV 430
Cdd:pfam01576 18 KERQQKAESELKELEKKHQQLCEEKNALQE------QLQAETELC-AEAEE--MRARLAarkqeleeilheLESRLEEEE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 431 DLSNQLEEERRK----VEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRE--LADNRLttvAEKS 504
Cdd:pfam01576 89 ERSQQLQNEKKKmqqhIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKErkLLEERI---SEFT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 505 RVLQLEEELSLRRGEIEELQHCLLQsgpppadhpEAAETLR----LRERLLSASKEHQDDSTLLQDKYEHMlktyQTEVD 580
Cdd:pfam01576 166 SNLAEEEEKAKSLSKLKNKHEAMIS---------DLEERLKkeekGRQELEKAKRKLEGESTDLQEQIAEL----QAQIA 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 581 KLRAANEKYAQEVADLKAKVQQATTENMGLMDNWKsKLDSLASDHQKSLEDLKATLNSGPgAQQKEIGE-LKAL------ 653
Cdd:pfam01576 233 ELRAQLAKKEEELQAALARLEEETAQKNNALKKIR-ELEAQISELQEDLESERAARNKAE-KQRRDLGEeLEALkteled 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 654 -------VEGIKMEHQLELGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELA-GLQQHWREQLEEQAAASAEAQEAQDQc 725
Cdd:pfam01576 311 tldttaaQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTeQLEQAKRNKANLEKAKQALESENAEL- 389
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 726 rDAQLRVQELEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAeAQSRQEAERLREKLLVAENRLQAAESLCSAQH 805
Cdd:pfam01576 390 -QAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKL-SKLQSELESVSSLLNEAEGKNIKLSKDVSSLE 467
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 806 SHVIESSDLSEETIRMK-----------ETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSVLENKCKSGEKKIDSLLKEK 874
Cdd:pfam01576 468 SQLQDTQELLQEETRQKlnlstrlrqleDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGK 547
|
570
....*....|.
gi 3850794 875 RRLEAELEAVS 885
Cdd:pfam01576 548 KRLQRELEALT 558
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
681-921 |
5.70e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 5.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 681 KEKEGLRQKLQEVQEELAGLQQhwreqleeqaaasaeaqEAQDQCRDAQLRVQELEGLDVEYRGQAQAIEFLKEQISLAE 760
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEK-----------------ELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 761 KKMLDyemLQRAEAQSRQEAERLREKLlvaENRLQAAESLCSAQHSHVIESSDLSEETIRMketVEGLQDKLNKRDKEVT 840
Cdd:COG4942 83 AELAE---LEKEIAELRAELEAQKEEL---AELLRALYRLGRQPPLALLLSPEDFLDAVRR---LQYLKYLAPARREQAE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 841 ALTSQMDMLRAQVSVLENKCKSGEKKIDSLLKEKRRLEAELEAVSRKTHDASGQLVHISQELLRKERSLNELRVLLLEAN 920
Cdd:COG4942 154 ELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
.
gi 3850794 921 R 921
Cdd:COG4942 234 A 234
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
357-968 |
7.20e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 50.22 E-value: 7.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 357 ALQEALKEKQQHIEQLLAER---DLERAEVAKA--------TSHICEVEKEIALLKAQHEqyvaEAEEKLQRARLLVENV 425
Cdd:pfam12128 312 AADAAVAKDRSELEALEDQHgafLDADIETAAAdqeqlpswQSELENLEERLKALTGKHQ----DVTAKYNRRRSKIKEQ 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 426 RKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELA-----DNRLTTV 500
Cdd:pfam12128 388 NNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQatatpELLLQLE 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 501 AEKSRVLQLEEELSLRRGEIEELQhcllqsgpppadhpeaAETLRLRERLLSASKEHQDDSTLLQDKyehmlktyQTEVD 580
Cdd:pfam12128 468 NFDERIERAREEQEAANAEVERLQ----------------SELRQARKRRDQASEALRQASRRLEER--------QSALD 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 581 KLraanekyaQEVADLKAKVQQATTENMGlmDNWKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKALVEGIK-- 658
Cdd:pfam12128 524 EL--------ELQLFPQAGTLLHFLRKEA--PDWEQSIGKVISPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRIDvp 593
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 659 ----MEHQLELGNLQAKHDLETAmHGKEKEG------LRQKLQEVQEEL----AGLQQHwREQLEEQAAASAEAQEAQDQ 724
Cdd:pfam12128 594 ewaaSEEELRERLDKAEEALQSA-REKQAAAeeqlvqANGELEKASREEtfarTALKNA-RLDLRRLFDEKQSEKDKKNK 671
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 725 CRD-----AQLRVQELEG-LDVEYRGQAQAIEFLKEQISLAEKKMLDYeMLQRAEAQSRQEAeRLREKLLVAENRLQAAE 798
Cdd:pfam12128 672 ALAerkdsANERLNSLEAqLKQLDKKHQAWLEEQKEQKREARTEKQAY-WQVVEGALDAQLA-LLKAAIAARRSGAKAEL 749
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 799 SLCSAQHSHVIESSDLSEETI-RMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSV----LENKCKSGEKKIDSLLKE 873
Cdd:pfam12128 750 KALETWYKRDLASLGVDPDVIaKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWLQrrprLATQLSNIERAISELQQQ 829
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 874 KRRLEAELE---AVSRKTHDASGQLVHISQELLRKERS----LNELRVllleanrHSPGPERDLSREVHKA---EWRIKE 943
Cdd:pfam12128 830 LARLIADTKlrrAKLEMERKASEKQQVRLSENLRGLRCemskLATLKE-------DANSEQAQGSIGERLAqleDLKLKR 902
|
650 660
....*....|....*....|....*
gi 3850794 944 QKLKDDIRGLREKLTGLDKEKSLSE 968
Cdd:pfam12128 903 DYLSESVKKYVEHFKNVIADHSGSG 927
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
362-902 |
7.31e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.02 E-value: 7.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 362 LKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEqyvaeaEEKLQRARLLVENVRKEK--VDLSNQLEEE 439
Cdd:TIGR04523 91 LKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKK------ENKKNIDKFLTEIKKKEKelEKLNNKYNDL 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 440 RRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAER---LLRELADnrlttvaEKSRVLQLEEELSLR 516
Cdd:TIGR04523 165 KKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKnksLESQISE-------LKKQNNQLKDNIEKK 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 517 RGEIEELQhcllqsgpppadhpeaAETLRLRERLLSASKEHQDDSTLLQDKyEHMLKTYQTEVDKLRAANEKYAQEVADL 596
Cdd:TIGR04523 238 QQEINEKT----------------TEISNTQTQLNQLKDEQNKIKKQLSEK-QKELEQNNKKIKELEKQLNQLKSEISDL 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 597 KAKVQQattenmglmdNWKSKLDSLASDHQKSLEDLKATLNSgpgaQQKEIGELKALVEGIKMEhqlelgnlqaKHDLET 676
Cdd:TIGR04523 301 NNQKEQ----------DWNKELKSELKNQEKKLEEIQNQISQ----NNKIISQLNEQISQLKKE----------LTNSES 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 677 AMHGKEKEgLRQKLQEVQEELAGLQQHWREQLEEQAAASAEAQEAQDQCRDAQLRVQELEGLDVEYRGQAQAIEFLKEQI 756
Cdd:TIGR04523 357 ENSEKQRE-LEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETI 435
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 757 SlaekkmldyemlqraeaQSRQEAERLREKLLVAENRLQAAESLCSAQHSHViesSDLSEETIRMKETVEGLQdklnkrd 836
Cdd:TIGR04523 436 I-----------------KNNSEIKDLTNQDSVKELIIKNLDNTRESLETQL---KVLSRSINKIKQNLEQKQ------- 488
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 3850794 837 KEVTALTSQMDMLRAQVSVLENKCKSGEKKIDSLLKEKRRLEAELEAVSRKTHDASGQLVHISQEL 902
Cdd:TIGR04523 489 KELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFEL 554
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
341-784 |
1.12e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.38 E-value: 1.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 341 LTETSSRYARKISGTIALQEALKEKQQHIEQLLAERDLERaEVAKATSHICEVEKEIALLKAQHEQYvAEAEEKLQRARL 420
Cdd:COG4717 93 LQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQ-ELEALEAELAELPERLEELEERLEEL-RELEEELEELEA 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 421 LVENVRKEKVDL--------SNQLEEERRKVEDLQFRVEEesitkgdLETQTQLEHARIGELEQSL--LLEKAQAERLLR 490
Cdd:COG4717 171 ELAELQEELEELleqlslatEEELQDLAEELEELQQRLAE-------LEEELEEAQEELEELEEELeqLENELEAAALEE 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 491 ELADNRLTTVAEKSRVLQLEEELSLRRGEIEELQHCLLQSGPPPADHPEAAETLRLRERLLSASKEHQDDSTLLQDKYEH 570
Cdd:COG4717 244 RLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEE 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 571 MLKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTEN--MGLMDNWKSKLDSLASDHQKSLEDLKATLNsgpgaQQKEIG 648
Cdd:COG4717 324 LLAALGLPPDLSPEELLELLDRIEELQELLREAEELEeeLQLEELEQEIAALLAEAGVEDEEELRAALE-----QAEEYQ 398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 649 ELKALVEgiKMEHQLELGNLQAKHDLETAmhgkEKEGLRQKLQEVQEELAGLQQHwREQLeeqaaasaeaqeaQDQCRDA 728
Cdd:COG4717 399 ELKEELE--ELEEQLEELLGELEELLEAL----DEEELEEELEELEEELEELEEE-LEEL-------------REELAEL 458
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 3850794 729 QLRVQELEGlDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERLR 784
Cdd:COG4717 459 EAELEQLEE-DGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREER 513
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
357-524 |
2.14e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 2.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 357 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQheqyVAEAEEKLQRARLLVENVRKEKVDLSNQL 436
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARR----IRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 437 EEERRKVEDL---QFRVEEESITKGDLETQTQLEHARIGELEQSLLLE-KAQAERL---LRELADNRLTTVAEKSRVLQL 509
Cdd:COG4942 100 EAQKEELAELlraLYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPArREQAEELradLAELAALRAELEAERAELEAL 179
|
170
....*....|....*
gi 3850794 510 EEELSLRRGEIEELQ 524
Cdd:COG4942 180 LAELEEERAALEALK 194
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
747-917 |
2.17e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.61 E-value: 2.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 747 QAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAENRLQAAESLCSAqHSHVIESSDLSEETIRMKETVE 826
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL-LPLYQELEALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 827 GLQDKLnkrdKEVTALTSQMDMLRAQVSVLENKC---------------KSGEKKIDSLLKEKRRLEAELEAVSRKTHDA 891
Cdd:COG4717 150 ELEERL----EELRELEEELEELEAELAELQEELeelleqlslateeelQDLAEELEELQQRLAELEEELEEAQEELEEL 225
|
170 180
....*....|....*....|....*...
gi 3850794 892 SGQLVHISQELLR--KERSLNELRVLLL 917
Cdd:COG4717 226 EEELEQLENELEAaaLEERLKEARLLLL 253
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
374-890 |
2.57e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.60 E-value: 2.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 374 AERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLLVENVRKEKVDLSNQLEEERRKVEDLQFRVEEE 453
Cdd:PTZ00121 1324 AEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED 1403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 454 SiTKGDLETQTQLEHARIGELEQSlLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEELSLRRGE----IEELQhcllq 529
Cdd:PTZ00121 1404 K-KKADELKKAAAAKKKADEAKKK-AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEeakkADEAK----- 1476
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 530 sgpppadhpEAAETLRLRERLLSASKEHQDDSTLLQDKYEHMLKTyqtevDKLRAANE-KYAQEV--ADLKAKVQQA-TT 605
Cdd:PTZ00121 1477 ---------KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKA-----DEAKKAEEaKKADEAkkAEEAKKADEAkKA 1542
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 606 ENMGLMDNWKSKLDSLASDHQKSLEDLKATLNSGPGAQQKeiGELKALVEGIKMEHQLELGNLQAKHDLETAMHGKEKEG 685
Cdd:PTZ00121 1543 EEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK--AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKI 1620
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 686 LRQKLQEVQEELAGLQQ-HWREQLEEQAAASAEAQEAQDQCRDAQLRVQELEgldveyrGQAQAIEFLKEQislaEKKML 764
Cdd:PTZ00121 1621 KAEELKKAEEEKKKVEQlKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE-------DKKKAEEAKKAE----EDEKK 1689
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 765 DYEMLQRaEAQSRQEAERLREKllvAENRLQAAESLCSAQHSHVIESSDLSEETIRMKETVEGLQDKLNKRDKEVTALTS 844
Cdd:PTZ00121 1690 AAEALKK-EAEEAKKAEELKKK---EAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKE 1765
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 3850794 845 QMDMLRAQVSVLENKCKSGEKKIDsllkEKRRLEAEleavsRKTHD 890
Cdd:PTZ00121 1766 EEKKAEEIRKEKEAVIEEELDEED----EKRRMEVD-----KKIKD 1802
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
422-964 |
3.72e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.71 E-value: 3.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 422 VENVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVA 501
Cdd:TIGR04523 35 EKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKN 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 502 EKSRVLQLEEELSLRRGEIEELQhcllqsgpppADHPEAAETLRLRERLLSASKEHQDDSTLLQDKYEHMLKTYQTEVDK 581
Cdd:TIGR04523 115 DKEQKNKLEVELNKLEKQKKENK----------KNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLN 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 582 LRAANEKYAQEVA-------DLKAKVQQATTENmglmdnwkSKLDSLASdHQKSLEDLKATLNSGPGAQQKEIGELKALV 654
Cdd:TIGR04523 185 IQKNIDKIKNKLLklelllsNLKKKIQKNKSLE--------SQISELKK-QNNQLKDNIEKKQQEINEKTTEISNTQTQL 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 655 EGIKMEHQLELGNLQAKHdLETAMHGKEKEGLRQKLQEVQEELAGL----QQHWREQLEEqaaasaeaqeaqdqcrdaQL 730
Cdd:TIGR04523 256 NQLKDEQNKIKKQLSEKQ-KELEQNNKKIKELEKQLNQLKSEISDLnnqkEQDWNKELKS------------------EL 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 731 RVQE--LEGLDVEYRGQAQAIEFLKEQISLAEK----KMLDYEMLQRAEAQSRQEAERL-REKllvaENRLQAAESLCSA 803
Cdd:TIGR04523 317 KNQEkkLEEIQNQISQNNKIISQLNEQISQLKKeltnSESENSEKQRELEEKQNEIEKLkKEN----QSYKQEIKNLESQ 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 804 QHSHVIESSDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSVLENKCKSGEKKIDSLLKEKRRLEAELEA 883
Cdd:TIGR04523 393 INDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKV 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 884 VSRKTHDASGQLVHISQELLRKERSLNELRvlllEANRHSPGPERDLSREVhkAEWRIKEQKLKDDIRGLREKLTGLDKE 963
Cdd:TIGR04523 473 LSRSINKIKQNLEQKQKELKSKEKELKKLN----EEKKELEEKVKDLTKKI--SSLKEKIEKLESEKKEKESKISDLEDE 546
|
.
gi 3850794 964 K 964
Cdd:TIGR04523 547 L 547
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
343-968 |
4.65e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.37 E-value: 4.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 343 ETSSRYARKISGTIALQEALKEKQQHIEQLLAERDlERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLLV 422
Cdd:PRK03918 145 ESREKVVRQILGLDDYENAYKNLGEVIKEIKRRIE-RLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREEL 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 423 ENVRKEKvdlsNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERL--LRELADNRLTTV 500
Cdd:PRK03918 224 EKLEKEV----KELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELkeLKEKAEEYIKLS 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 501 AEKSRVLQ----LEEELSLRRGEIEELQHCLlqsgpppadhPEAAETLRLRERLLSASKEHQDDSTLLQDKYE--HMLKT 574
Cdd:PRK03918 300 EFYEEYLDelreIEKRLSRLEEEINGIEERI----------KELEEKEERLEELKKKLKELEKRLEELEERHElyEEAKA 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 575 YQTEVDKLRAANEKYaqEVADLKAKVQQATTENMGLMDNWKSKLDSLASDHQKSlEDLKATLNSGPGAQQK------EIG 648
Cdd:PRK03918 370 KKEELERLKKRLTGL--TPEKLEKELEELEKAKEEIEEEISKITARIGELKKEI-KELKKAIEELKKAKGKcpvcgrELT 446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 649 ElkalvegikmEHQlelGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGLqqhwrEQLEEQAAASAEAQEAQDQCRDA 728
Cdd:PRK03918 447 E----------EHR---KELLEEYTAELKRIEKELKEIEEKERKLRKELREL-----EKVLKKESELIKLKELAEQLKEL 508
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 729 QlrvQELEGLDVEYrgqaqaieflkeqislAEKKMLDYEMLQRAEAQSRQEAERLREKLlvaeNRLQAAESLcsaqhshv 808
Cdd:PRK03918 509 E---EKLKKYNLEE----------------LEKKAEEYEKLKEKLIKLKGEIKSLKKEL----EKLEELKKK-------- 557
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 809 iessdlSEETIRMKETVEGLQDKLNKRDKEVTalTSQMDMLRAQVSVLE------NKCKSGEKKIDSLLKEKRRLEAELE 882
Cdd:PRK03918 558 ------LAELEKKLDELEEELAELLKELEELG--FESVEELEERLKELEpfyneyLELKDAEKELEREEKELKKLEEELD 629
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 883 AVSRKTHDASGQLVHISQELLRKERSLNElrvlllEANRHSPGPERDLSREVHKAEWRIKE-----QKLKDDIRGLREKL 957
Cdd:PRK03918 630 KAFEELAETEKRLEELRKELEELEKKYSE------EEYEELREEYLELSRELAGLRAELEElekrrEEIKKTLEKLKEEL 703
|
650
....*....|.
gi 3850794 958 TGLDKEKSLSE 968
Cdd:PRK03918 704 EEREKAKKELE 714
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
341-755 |
6.40e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.24 E-value: 6.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 341 LTETSSRYARKISGTIALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARL 420
Cdd:COG1196 328 LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 421 LVENVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTV 500
Cdd:COG1196 408 AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 501 AEKSRVLQLEEELSLRRGEIEELQHCLLQSGPPP---------------ADHPEAAETLRLRERL--------------- 550
Cdd:COG1196 488 EAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGlagavavligveaayEAALEAALAAALQNIVveddevaaaaieylk 567
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 551 ---------LSASKEHQDDSTLLQDKYEHMLKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTENMGLM--------DN 613
Cdd:COG1196 568 aakagratfLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRravtlagrLR 647
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 614 WKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKALVEGIKMEHQLELGNLQAKHDLETAMHGKEKEGLRQKLQEV 693
Cdd:COG1196 648 EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 3850794 694 QEELAGLQQHWREQLEEQAAASAEAQEAQD----------QCRDAQLRVQELEGLDV----EYRGQAQAIEFLKEQ 755
Cdd:COG1196 728 EQLEAEREELLEELLEEEELLEEEALEELPeppdleelerELERLEREIEALGPVNLlaieEYEELEERYDFLSEQ 803
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
379-511 |
8.47e-05 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 46.40 E-value: 8.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 379 ERAEVAKAtshicEVEKEIALLKAQHEQYVAEAEEKLQRARLLVENVRKEKvDLSNQLEEERRKVEDLQFR----VEEES 454
Cdd:COG2268 199 RDARIAEA-----EAERETEIAIAQANREAEEAELEQEREIETARIAEAEA-ELAKKKAEERREAETARAEaeaaYEIAE 272
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 3850794 455 ITKgDLETQTQLEharIGELEQSLLLEKAQAERLLREL-ADNRLTTVAEKSRVLQLEE 511
Cdd:COG2268 273 ANA-EREVQRQLE---IAEREREIELQEKEAEREEAELeADVRKPAEAEKQAAEAEAE 326
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
358-703 |
9.73e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.55 E-value: 9.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 358 LQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLL---VENVRKEKVDLSN 434
Cdd:TIGR04523 361 KQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLekeIERLKETIIKNNS 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 435 QLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQ-----------------SLLLEKAQAERLLRELADN-- 495
Cdd:TIGR04523 441 EIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQnleqkqkelkskekelkKLNEEKKELEEKVKDLTKKis 520
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 496 RLTTVAEK--SRVLQLEEELSLRRGEIEELQHCLlqsgpppaDHPEAAETLRLRERLLSASKEHQDDSTLLQDKYEHMLK 573
Cdd:TIGR04523 521 SLKEKIEKleSEKKEKESKISDLEDELNKDDFEL--------KKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELID 592
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 574 TYQTEVDKLRAANEKYAQEVADLKAKVQQATTENMGL---MDNWKSKLDSLASDHQKSLEDLKATLNSGPGAqQKEIGEL 650
Cdd:TIGR04523 593 QKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLssiIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEI-IKKIKES 671
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 3850794 651 KALVEGIK--MEHQLELGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGLQQH 703
Cdd:TIGR04523 672 KTKIDDIIelMKDWLKELSLHYKKYITRMIRIKDLPKLEEKYKEIEKELKKLDEF 726
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
359-783 |
1.25e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.12 E-value: 1.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 359 QEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLLVENVR---------KEK 429
Cdd:TIGR00618 437 QRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCplcgscihpNPA 516
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 430 VDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSllLEKAQAERLLRELADNRLTTVAEK-----S 504
Cdd:TIGR00618 517 RQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQ--MQEIQQSFSILTQCDNRSKEDIPNlqnitV 594
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 505 RVLQLEEELSLRRGEIEELQHCLLQSGPPPADHPEAAETLRLRERLLSASKE--HQDDSTLLQDKYEHML---KTYQTEV 579
Cdd:TIGR00618 595 RLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTalHALQLTLTQERVREHAlsiRVLPKEL 674
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 580 DKLRAANEKYAQEVADLKAKVQQATTENMGLMDNWKSKL---DSLASDHQKSLEDLKATLNSGPGAQQKEIGELKALVEg 656
Cdd:TIGR00618 675 LASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIeeyDREFNEIENASSSLGSDLAAREDALNQSLKELMHQAR- 753
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 657 IKMEHQLELGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGLQQhwreQLEEQAAASAEAQEAQDQCRDAQ--LRVQE 734
Cdd:TIGR00618 754 TVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTH----LLKTLEAEIGQEIPSDEDILNLQceTLVQE 829
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 3850794 735 LEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERL 783
Cdd:TIGR00618 830 EEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKL 878
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
364-606 |
1.31e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.21 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 364 EKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLLVENVRKEKVDLSNQLEEERRKV 443
Cdd:TIGR02169 791 SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL 870
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 444 EDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLlreladnrlttvaeKSRVLQLEEELSLRRGEIEEL 523
Cdd:TIGR02169 871 EELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKK--------------RKRLSELKAKLEALEEELSEI 936
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 524 QHCLLQSGPPPADHPEAAETLRLRERLLSASKEHQDDSTLLQDKYEHMLKTYqtevDKLRAANEKYAQEVADLKAKVQQA 603
Cdd:TIGR02169 937 EDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRL----DELKEKRAKLEEERKAILERIEEY 1012
|
...
gi 3850794 604 TTE 606
Cdd:TIGR02169 1013 EKK 1015
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
358-523 |
1.81e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.15 E-value: 1.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 358 LQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIallkAQHEQYVAEAEEKLQRARLLVENVRKEK--VDLSNQ 435
Cdd:COG1579 22 LEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEI----KRLELEIEEVEARIKKYEEQLGNVRNNKeyEALQKE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 436 LEEERRKVEDLqfrveEESItkgdLETQTQLEHAR--IGELEQSLLLEKAQAERLLRELadnrlttvaeKSRVLQLEEEL 513
Cdd:COG1579 98 IESLKRRISDL-----EDEI----LELMERIEELEeeLAELEAELAELEAELEEKKAEL----------DEELAELEAEL 158
|
170
....*....|
gi 3850794 514 SLRRGEIEEL 523
Cdd:COG1579 159 EELEAEREEL 168
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
731-974 |
2.29e-04 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 45.13 E-value: 2.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 731 RVQELEGLDVEYRGQAQAIefLKEQISLaEKKMLDYEMLQRAEAQSRQEAERLREKLLVAEnrlQAAESLCSAQHSHVIE 810
Cdd:pfam07111 71 QLQELRRLEEEVRLLRETS--LQQKMRL-EAQAMELDALAVAEKAGQAEAEGLRAALAGAE---MVRKNLEEGSQRELEE 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 811 SSDLSEETirmketvegLQDKLNKRDKEVTALTSQMDMLRAQVSVLENKcKSGEKKidsllkekrrleaELEAVSRKTHD 890
Cdd:pfam07111 145 IQRLHQEQ---------LSSLTQAHEEALSSLTSKAEGLEKSLNSLETK-RAGEAK-------------QLAEAQKEAEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 891 ASGQLVHISQELlrkerslnELRVLLLEANRHSPGPErdLSREVHKAEWRIKEQKLKDDIRGLREKLTGLDKEKSLSEQR 970
Cdd:pfam07111 202 LRKQLSKTQEEL--------EAQVTLVESLRKYVGEQ--VPPEVHSQTWELERQELLDTMQHLQEDRADLQATVELLQVR 271
|
....
gi 3850794 971 RYSL 974
Cdd:pfam07111 272 VQSL 275
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
406-1015 |
3.03e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 3.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 406 QYVAEAEEKLQRARLLVENVrKEKVDLSNQLEEERRKVEDLQ------FRVEEESITKGDLETQtqLEHARIGELEQSLL 479
Cdd:COG4913 215 EYMLEEPDTFEAADALVEHF-DDLERAHEALEDAREQIELLEpirelaERYAAARERLAELEYL--RAALRLWFAQRRLE 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 480 LEKAQAERLLRELADNrlttvaeKSRVLQLEEELSLRRGEIEELQHCLLQSGpppadhpeaAETLRLRERLLSASKEHQD 559
Cdd:COG4913 292 LLEAELEELRAELARL-------EAELERLEARLDALREELDELEAQIRGNG---------GDRLEQLEREIERLERELE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 560 DSTLLQDKYEHMLKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTENMGLMDNWKSKLDSLASDH---QKSLEDLKATL 636
Cdd:COG4913 356 ERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELrelEAEIASLERRK 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 637 NSGPGAQQKEIGEL-KALveGIKmEHQL----ELGNLQAKHD-----LETAMHGKekeGLR-----QKLQEVQEELAGLq 701
Cdd:COG4913 436 SNIPARLLALRDALaEAL--GLD-EAELpfvgELIEVRPEEErwrgaIERVLGGF---ALTllvppEHYAAALRWVNRL- 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 702 qHWREQLEEQAAASAEAQEAQDQCRDAQLrVQELEGLDVEYRGQAQAI--------------EFLKEQISLAEKKML--- 764
Cdd:COG4913 509 -HLRGRLVYERVRTGLPDPERPRLDPDSL-AGKLDFKPHPFRAWLEAElgrrfdyvcvdspeELRRHPRAITRAGQVkgn 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 765 --------------DYEMLQRAEAQS---RQEAERLREKLLVAENRLQAAESL---CSAQHSHVIESSDLSEETIRMKET 824
Cdd:COG4913 587 gtrhekddrrrirsRYVLGFDNRAKLaalEAELAELEEELAEAEERLEALEAEldaLQERREALQRLAEYSWDEIDVASA 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 825 VEGLQDKLNKRDkEVTALTSQMDMLRAQVSVLENKCKSGEKKIDSLLKEKRRLEAELEavsrkthDASGQLVHISQELLR 904
Cdd:COG4913 667 EREIAELEAELE-RLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELE-------QAEEELDELQDRLEA 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 905 KERSLNELRVLLLEANRHSPGPERDLSREVHKAEWRIkeQKLKDDIRGLREKLtgldkEKSLSE-QRRYSL------IDP 977
Cdd:COG4913 739 AEDLARLELRALLEERFAAALGDAVERELRENLEERI--DALRARLNRAEEEL-----ERAMRAfNREWPAetadldADL 811
|
650 660 670 680
....*....|....*....|....*....|....*....|....*
gi 3850794 978 ASPPELLKLQHQLVST-----EDALRDALNQA--QQVERLVEALR 1015
Cdd:COG4913 812 ESLPEYLALLDRLEEDglpeyEERFKELLNENsiEFVADLLSKLR 856
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
359-1016 |
3.44e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 3.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 359 QEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRarlLVENVRKEKVDLSNQLEE 438
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLER---EIERLERELEERERRRAR 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 439 ERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAE----KSRVLQLEEELS 514
Cdd:COG4913 364 LEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEiaslERRKSNIPARLL 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 515 LRRGEIEElqhcllQSGPPPADHPEAAETLRLR----------ERLLsaskeHQDDSTLL-QDKYEHMLKTYqteVDKLR 583
Cdd:COG4913 444 ALRDALAE------ALGLDEAELPFVGELIEVRpeeerwrgaiERVL-----GGFALTLLvPPEHYAAALRW---VNRLH 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 584 AANEKYAQEVADLKAKVQQATTENMGLMDnwksKLDSLASDHQKSLEDlkatlnsgpgaqqkEIGELKALVegiKMEHQL 663
Cdd:COG4913 510 LRGRLVYERVRTGLPDPERPRLDPDSLAG----KLDFKPHPFRAWLEA--------------ELGRRFDYV---CVDSPE 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 664 ELGNL--------QAKHDLETAMHGKEKEGLRQ---------KLQEVQEELAGLQQHWREQLEEQAAASAEAQEAQDQcR 726
Cdd:COG4913 569 ELRRHpraitragQVKGNGTRHEKDDRRRIRSRyvlgfdnraKLAALEAELAELEEELAEAEERLEALEAELDALQER-R 647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 727 DAQLRVQELEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKLlvaenrlqaaeslcsaqhs 806
Cdd:COG4913 648 EALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDLAALEEQLEELEAELEELEEEL------------------- 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 807 hviessdlseetirmketvEGLQDKLNKRDKEVTALTSQMDMLRAQVSVLENKCKSGEkkiDSLLKEKRRLEAELEAVSR 886
Cdd:COG4913 709 -------------------DELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLEL---RALLEERFAAALGDAVERE 766
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 887 KTHDASGQLVHISQELLRKERslnELRVLLLEANRHSPGPERDLSREV------------------HKAEWRIKEQKLKD 948
Cdd:COG4913 767 LRENLEERIDALRARLNRAEE---ELERAMRAFNREWPAETADLDADLeslpeylalldrleedglPEYEERFKELLNEN 843
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 949 DIRGLREKLTGLDKE------------KSLS-----EQRRYSL-IDPASPPELLKLQHQL---VSTEDALRDALNQA--Q 1005
Cdd:COG4913 844 SIEFVADLLSKLRRAireikeridplnDSLKripfgPGRYLRLeARPRPDPEVREFRQELravTSGASLFDEELSEArfA 923
|
730
....*....|.
gi 3850794 1006 QVERLVEALRG 1016
Cdd:COG4913 924 ALKRLIERLRS 934
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
651-1015 |
5.13e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.34 E-value: 5.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 651 KALVEGIKMEHQLELGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGLQQHwreqleeqaaasaeaqeaqdqcRDAQL 730
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQME----------------------RDAMA 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 731 RVQelegldveyRGQAQAIEFLKEQIS-----LAEKKMLDYEMLQRAEAQsrqeAERLREKLLVAENRLQAAESLC---- 801
Cdd:pfam15921 131 DIR---------RRESQSQEDLRNQLQntvheLEAAKCLKEDMLEDSNTQ----IEQLRKMMLSHEGVLQEIRSILvdfe 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 802 SAQHSHVIESSDLSeeTIRMKETVEGLQDKLNKRDKEVTALTSQM----DMLRAQVSVLENK----CKSGEKKIDSLLKE 873
Cdd:pfam15921 198 EASGKKIYEHDSMS--TMHFRSLGSAISKILRELDTEISYLKGRIfpveDQLEALKSESQNKiellLQQHQDRIEQLISE 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 874 KrrlEAELEAVSRKTHDASGQL------VHISQELLRKERSL------------NELRVLLLEANRHSPGPERDLSREVH 935
Cdd:pfam15921 276 H---EVEITGLTEKASSARSQAnsiqsqLEIIQEQARNQNSMymrqlsdlestvSQLRSELREAKRMYEDKIEELEKQLV 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 936 KAEWRIKEQK------------LKDDIRGLREKLTGLDKEKSLSEQRRYSLIDPASPPELlklqhqlvsTEDALRDALN- 1002
Cdd:pfam15921 353 LANSELTEARterdqfsqesgnLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSI---------TIDHLRRELDd 423
|
410
....*....|....*.
gi 3850794 1003 ---QAQQVERLVEALR 1015
Cdd:pfam15921 424 rnmEVQRLEALLKAMK 439
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
367-692 |
6.14e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.94 E-value: 6.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 367 QHIEQLLAERDL---ERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLLVENVRKEKVDLSNQLEEERRKV 443
Cdd:pfam05483 408 EELKKILAEDEKlldEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKN 487
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 444 EDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEELSLRRGEI--- 520
Cdd:pfam05483 488 IELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVkck 567
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 521 ----EELQHCLLQSGPPPADHPEAAETL--RLRERLLSASKE----HQDDSTL--------------------------- 563
Cdd:pfam05483 568 ldksEENARSIEYEVLKKEKQMKILENKcnNLKKQIENKNKNieelHQENKALkkkgsaenkqlnayeikvnklelelas 647
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 564 LQDKYEHMLKTYQTEVDKLRAANEKYAQEVADLKAKVQQAT--------------TENMGLMDNWKSKLDSLASDHQKSL 629
Cdd:pfam05483 648 AKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVklqkeidkrcqhkiAEMVALMEKHKHQYDKIIEERDSEL 727
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 3850794 630 EDLKatlnsgpgAQQKEIGELKALVEgikmehqLELGNLQA-----KHDLEtaMHGKEKEGLRQKLQE 692
Cdd:pfam05483 728 GLYK--------NKEQEQSSAKAALE-------IELSNIKAellslKKQLE--IEKEEKEKLKMEAKE 778
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
457-1012 |
6.36e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.06 E-value: 6.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 457 KGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTT--VAEKSRVLQLEEELSLRRGEIEELQHCllqsgppp 534
Cdd:pfam12128 192 EGKFRDVKSMIVAILEDDGVVPPKSRLNRQQVEHWIRDIQAIAgiMKIRPEFTKLQQEFNTLESAELRLSHL-------- 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 535 adHPEAAETLRLRERLLSASKEHQDDSTLLQDKYEHMLKTYQTEVD-KLRAANEKYAQEVADLKAKVQQATTENMGLMDN 613
Cdd:pfam12128 264 --HFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNgELSAADAAVAKDRSELEALEDQHGAFLDADIET 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 614 WKSKLDSLASdHQKSLEDLKATLNSGPGAQQKEIGELKALVEGIKMEHQLELGNLQAKHDletamhgKEKEGLRQKLQEV 693
Cdd:pfam12128 342 AAADQEQLPS-WQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLA-------KIREARDRQLAVA 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 694 QEELAGLQQHWREQLeeqaaaSAEAQEAQDQCRDAQLRVQELEGLdveyRGQAQAIEFLKEQI-----------SLAEKK 762
Cdd:pfam12128 414 EDDLQALESELREQL------EAGKLEFNEEEYRLKSRLGELKLR----LNQATATPELLLQLenfderierarEEQEAA 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 763 MLDYEMLQRAEAQSRQEAERLREKLLVAENRLQAAESLCSAQHSHVIESSD-----LSEETIRMKETVEGLQDklnkrdk 837
Cdd:pfam12128 484 NAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGtllhfLRKEAPDWEQSIGKVIS------- 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 838 evTALTSQMDMlraqVSVLENKCKSGE----------KKID--SLLKEKRRLEAELEAVSRKTHDASGQLVHISQELLRK 905
Cdd:pfam12128 557 --PELLHRTDL----DPEVWDGSVGGElnlygvkldlKRIDvpEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQA 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 906 ERSLNELRVLLLEANRHSPGPERDLSR--EVHKAEWRIKEQKLKDDIRGLREKLTGLDKEKSLSEqrryslidpasppel 983
Cdd:pfam12128 631 NGELEKASREETFARTALKNARLDLRRlfDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLD--------------- 695
|
570 580
....*....|....*....|....*....
gi 3850794 984 LKLQHQLVSTEDALRDALNQAQQVERLVE 1012
Cdd:pfam12128 696 KKHQAWLEEQKEQKREARTEKQAYWQVVE 724
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
576-798 |
6.96e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 6.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 576 QTEVDKLRAANEKYAQEVADLKAKVQQATT------ENMGLMDnwkskLDSLASDHQKSLEDLKATLNsgpgAQQKEIGE 649
Cdd:COG3206 167 ELRREEARKALEFLEEQLPELRKELEEAEAaleefrQKNGLVD-----LSEEAKLLLQQLSELESQLA----EARAELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 650 LKALVEGIkmEHQLELGNLQAKHDLETAmhgkEKEGLRQKLQEVQEELAGLQQHWREQLEEQAAASAEAQEAQDQCRDAQ 729
Cdd:COG3206 238 AEARLAAL--RAQLGSGPDALPELLQSP----VIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEA 311
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 3850794 730 LRVqeLEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAENRLQAAE 798
Cdd:COG3206 312 QRI--LASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEAR 378
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
361-949 |
7.07e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.88 E-value: 7.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 361 ALKEKQQHIEQLLAERDLERAEVAKATshicevEKEIALLKAQHEQYVAEAEEKLQRARLLVENVRKEKVDLSNQLEEER 440
Cdd:TIGR00606 273 ALKSRKKQMEKDNSELELKMEKVFQGT------DEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELL 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 441 RKVEDLQFRVE--EESITKGDLETQTQLEHARIGELEQSLLLEKA--QAERLLRELADNRLTTVAEKSRVLQLEEELSlr 516
Cdd:TIGR00606 347 VEQGRLQLQADrhQEHIRARDSLIQSLATRLELDGFERGPFSERQikNFHTLVIERQEDEAKTAAQLCADLQSKERLK-- 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 517 rgeieelqhcllqsgpppadhpeaaetlrlrerllsaskehQDDSTLLQDKYEHMLKTYQTEVDKLraanEKYAQEVADL 596
Cdd:TIGR00606 425 -----------------------------------------QEQADEIRDEKKGLGRTIELKKEIL----EKKQEELKFV 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 597 KAKVQQATtenmGLMDNWKSKLDSLasdhQKSLEDL-KATLNSGPGAQQKEIGELKalvegikmEHQLELGNLQAKHDLE 675
Cdd:TIGR00606 460 IKELQQLE----GSSDRILELDQEL----RKAERELsKAEKNSLTETLKKEVKSLQ--------NEKADLDRKLRKLDQE 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 676 TAMHGKEKEGLRQKLQEVQEELAGLQQ-------------------HWREQLEEQ-AAASAEAQEAQDQCRDAQLRVQEL 735
Cdd:TIGR00606 524 MEQLNHHTTTRTQMEMLTKDKMDKDEQirkiksrhsdeltsllgyfPNKKQLEDWlHSKSKEINQTRDRLAKLNKELASL 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 736 EGLDVEYRGQAQAIEflkEQISLAEKKMLDYEMLQRAEAqsrqEAERLREKLLVAENRLQAAESLCSAQHSHVIESSDLS 815
Cdd:TIGR00606 604 EQNKNHINNELESKE---EQLSSYEDKLFDVCGSQDEES----DLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDEN 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 816 EETIRmketvegLQDKLNKRDKEVTALTSQmdmlraqvsvLENKCKSGEKKIDSLLKEKRRLEAELEAVSRKthdASGQl 895
Cdd:TIGR00606 677 QSCCP-------VCQRVFQTEAELQEFISD----------LQSKLRLAPDKLKSTESELKKKEKRRDEMLGL---APGR- 735
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 3850794 896 vhiSQELLRKERSLNELRVLLLEANRHSPGPERDLSREVHKAEWRIKEQKLKDD 949
Cdd:TIGR00606 736 ---QSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKV 786
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
659-969 |
7.14e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.57 E-value: 7.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 659 MEHQLELGNLQAKHDLETAmhgkEKEGLRQKLQEVQEELAGLQQHWREQLEEQAAASAEAQEAQDQCRDAQLRVQELEGL 738
Cdd:pfam17380 278 VQHQKAVSERQQQEKFEKM----EQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERI 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 739 DVEYRgQAQAIEFLKEQISLAEKKMLDYEMLQraeAQSRQEAERLREKL-------LVAENRLQAAESLCSAQHSHVIES 811
Cdd:pfam17380 354 RQEER-KRELERIRQEEIAMEISRMRELERLQ---MERQQKNERVRQELeaarkvkILEEERQRKIQQQKVEMEQIRAEQ 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 812 SDLSEETIRMKEtvEGLQDKLNKRDKEVTALTSQMDMLRAQVSVLENK--CKSGEKKIDSLLKEKRR--LEAELEAVSRK 887
Cdd:pfam17380 430 EEARQREVRRLE--EERAREMERVRLEEQERQQQVERLRQQEEERKRKklELEKEKRDRKRAEEQRRkiLEKELEERKQA 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 888 THDASGQLVHISQELLRKERSLNElrvlllEANRHSPGPERDLSREVHKAEwRIKEQKLKddIRGLREKLTGLDKEKSLS 967
Cdd:pfam17380 508 MIEEERKRKLLEKEMEERQKAIYE------EERRREAEEERRKQQEMEERR-RIQEQMRK--ATEERSRLEAMEREREMM 578
|
..
gi 3850794 968 EQ 969
Cdd:pfam17380 579 RQ 580
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
357-513 |
7.71e-04 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 43.32 E-value: 7.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 357 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHIcEVEKEIALLKAQHEQYVAEAEEKLQRAR------LLVENVRKEKV 430
Cdd:COG2268 213 EIAIAQANREAEEAELEQEREIETARIAEAEAEL-AKKKAEERREAETARAEAEAAYEIAEANaerevqRQLEIAERERE 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 431 DLSNQLEEERRKVEdlqfrVEEESITKGDLETQTQLEHARiGELEQSLLLEKAQAE--RLLRElADNRLTTVAEKSRVLQ 508
Cdd:COG2268 292 IELQEKEAEREEAE-----LEADVRKPAEAEKQAAEAEAE-AEAEAIRAKGLAEAEgkRALAE-AWNKLGDAAILLMLIE 364
|
....*
gi 3850794 509 LEEEL 513
Cdd:COG2268 365 KLPEI 369
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
566-997 |
9.40e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 9.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 566 DKYEHM---LKTYQTEVDKLRAANEKYAQ---EVADLKAKVQQATTENMGLMDNWKSKLDSLASDhqksLEDLKATLnsg 639
Cdd:PRK03918 158 DDYENAyknLGEVIKEIKRRIERLEKFIKrteNIEELIKEKEKELEEVLREINEISSELPELREE----LEKLEKEV--- 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 640 pgaqqKEIGELKALVEGIKMEHQLELGNLQAkhdLETAMHGKEK--EGLRQKLQEVQEELAGLqqhwrEQLEEQAAASAE 717
Cdd:PRK03918 231 -----KELEELKEEIEELEKELESLEGSKRK---LEEKIRELEEriEELKKEIEELEEKVKEL-----KELKEKAEEYIK 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 718 AQEAQDQCRDAQLRVQELEGldvEYRGQAQAIEflkEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAENRLQAA 797
Cdd:PRK03918 298 LSEFYEEYLDELREIEKRLS---RLEEEINGIE---ERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKK 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 798 ESLCSAQhshviessdlSEETIRMKETVEGLQDKLNKRDKEVTaltSQMDMLRAQVSVLENKCKSGEKKIDSLLKEKRRL 877
Cdd:PRK03918 372 EELERLK----------KRLTGLTPEKLEKELEELEKAKEEIE---EEISKITARIGELKKEIKELKKAIEELKKAKGKC 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 878 ---------EAELEAVSRKTHDasgqLVHISQELLRKERSLNELRVLLleanrhspgpeRDLSREVHKAEWRIKEQKLKD 948
Cdd:PRK03918 439 pvcgrelteEHRKELLEEYTAE----LKRIEKELKEIEEKERKLRKEL-----------RELEKVLKKESELIKLKELAE 503
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 3850794 949 DIRGLREKLTGLDKEKSLSEQRRYSLIDpaspPELLKLQHQLVSTEDAL 997
Cdd:PRK03918 504 QLKELEEKLKKYNLEELEKKAEEYEKLK----EKLIKLKGEIKSLKKEL 548
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
341-524 |
9.51e-04 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 42.49 E-value: 9.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 341 LTETSSRYARKISGTIALQEALKEKQQhieqlLAERDLE--RAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEkLQRA 418
Cdd:pfam15905 161 LMKLRNKLEAKMKEVMAKQEGMEGKLQ-----VTQKNLEhsKGKVAQLEEKLVSTEKEKIEEKSETEKLLEYITE-LSCV 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 419 RLLVENVRKEKVDLSNQLEEERRKVEDLQFRVEEEsitKGDLETQTQLEHARIGELEQSLllekaqaERLLRELADNRLT 498
Cdd:pfam15905 235 SEQVEKYKLDIAQLEELLKEKNDEIESLKQSLEEK---EQELSKQIKDLNEKCKLLESEK-------EELLREYEEKEQT 304
|
170 180
....*....|....*....|....*.
gi 3850794 499 TVAEksrVLQLEEELSLRRGEIEELQ 524
Cdd:pfam15905 305 LNAE---LEELKEKLTLEEQEHQKLQ 327
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
412-971 |
9.91e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.35 E-value: 9.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 412 EEKLQRARLLVENVRKekvdlsnQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELeQSLLLEKAQAERLLRE 491
Cdd:PRK01156 189 EEKLKSSNLELENIKK-------QIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNEL-SSLEDMKNRYESEIKT 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 492 lADNRlttvaeksrvLQLEEELSLRRGEIEElQHCLLQSGPPPADHPEAAETLRLRERLLSASKEHQDDSTLLQdKYEHM 571
Cdd:PRK01156 261 -AESD----------LSMELEKNNYYKELEE-RHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEIN-KYHAI 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 572 LKTYQtEVDKLRAANEKYAQEVADLKAKVQQATTENM---GLMDNWKSKlDSLASDHQKSLEDLKATLNSGPGAQQKEIG 648
Cdd:PRK01156 328 IKKLS-VLQKDYNDYIKKKSRYDDLNNQILELEGYEMdynSYLKSIESL-KKKIEEYSKNIERMSAFISEILKIQEIDPD 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 649 ELKALVEGIK---MEHQLELGNLQAKhdletamhgkeKEGLRQKLQEVQEELAGLQQHWR-----EQLEEQAAASAEAQE 720
Cdd:PRK01156 406 AIKKELNEINvklQDISSKVSSLNQR-----------IRALRENLDELSRNMEMLNGQSVcpvcgTTLGEEKSNHIINHY 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 721 AQDQCR-DAQLRVQELE--GLDVEYRGQAQAIEFL-KEQIslaEKKMLDYEMLQRAEAQSRQEAERLREkLLVAENRLQA 796
Cdd:PRK01156 475 NEKKSRlEEKIREIEIEvkDIDEKIVDLKKRKEYLeSEEI---NKSINEYNKIESARADLEDIKIKINE-LKDKHDKYEE 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 797 AESLCSAQHSHVIES---SDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSVLENKCKSGEKKIDSLLKE 873
Cdd:PRK01156 551 IKNRYKSLKLEDLDSkrtSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANN 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 874 KRRLEAELEAVSRKTHDASGQLVHISQELLRK---ERSLNELRVLLLEANRHSPGPERDLSR-EVHKAEWRIKEQKLKDD 949
Cdd:PRK01156 631 LNNKYNEIQENKILIEKLRGKIDNYKKQIAEIdsiIPDLKEITSRINDIEDNLKKSRKALDDaKANRARLESTIEILRTR 710
|
570 580
....*....|....*....|..
gi 3850794 950 IRGLREKLTglDKEKSLSEQRR 971
Cdd:PRK01156 711 INELSDRIN--DINETLESMKK 730
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
367-522 |
1.03e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 367 QHIEQL--LAERDLERAEVAKAtshICEVEKEIALLKAQheqyVAEAEEKLQRARLLVENVRKEKVDLSNQLEEERRKVE 444
Cdd:COG1579 4 EDLRALldLQELDSELDRLEHR---LKELPAELAELEDE----LAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 445 DLQFRVEEESITK--GDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEELSLRRGEIEE 522
Cdd:COG1579 77 KYEEQLGNVRNNKeyEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEA 156
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
728-1008 |
1.04e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 728 AQLRVQELEG---LDVEYRG----QAQAI------EFLKEQISLAekkmldYEMLQRAEAQSRQEAERLREKLLVAENRL 794
Cdd:COG3206 125 KNLTVEPVKGsnvIEISYTSpdpeLAAAVanalaeAYLEQNLELR------REEARKALEFLEEQLPELRKELEEAEAAL 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 795 QAAEslcsAQHSHViessDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSVLENKCK--SGEKKIDSLLK 872
Cdd:COG3206 199 EEFR----QKNGLV----DLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPelLQSPVIQQLRA 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 873 EKRRLEAELEAVSRKTHDASGQLVHISQELlrkerslNELRVLLleanrhspgperdlsrevhKAEWRIKEQKLKDDIRG 952
Cdd:COG3206 271 QLAELEAELAELSARYTPNHPDVIALRAQI-------AALRAQL-------------------QQEAQRILASLEAELEA 324
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 3850794 953 LREKLTGLdkEKSLSEQRRYSLIDPASPPELLKLQHQLVSTEDALRDALNQAQQVE 1008
Cdd:COG3206 325 LQAREASL--QAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEAR 378
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
350-845 |
1.62e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.40 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 350 RKISGTIALQEALKEKQQHIEQLLAERDLERAEVAKAtshicevekeiallKAQHEQYVAEAEEKLQRarlLVENVRKEK 429
Cdd:pfam05483 307 RSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKA--------------KAAHSFVVTEFEATTCS---LEELLRTEQ 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 430 VDLSNQLEEERRKVEDLQFRVEE-ESITKGDLETQTQLEHAR--IGElEQSLLLEKAQAERLLRELadnrlttvaeKSRV 506
Cdd:pfam05483 370 QRLEKNEDQLKIITMELQKKSSElEEMTKFKNNKEVELEELKkiLAE-DEKLLDEKKQFEKIAEEL----------KGKE 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 507 LQLEEELSLRRGEIEELQHCLLQSGPPPADHPEAAETLRL---RERLLSASKEHQDDSTLLQDK--------YEHMLKTY 575
Cdd:pfam05483 439 QELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTeleKEKLKNIELTAHCDKLLLENKeltqeasdMTLELKKH 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 576 QTEVDKLRAANEKYAQEVADLKAKVQQATTENMGLMDNWKSKLDSLASDHQKSLEDLKaTLNSGPGAQQKEIGELKALVE 655
Cdd:pfam05483 519 QEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENAR-SIEYEVLKKEKQMKILENKCN 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 656 GIKMEHQLELGNLQAKHDLETAMHGKEKEGLRQ------KLQEVQEELAGLQQHWREQLEEQAAASAEAQEAQD----QC 725
Cdd:pfam05483 598 NLKKQIENKNKNIEELHQENKALKKKGSAENKQlnayeiKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEklleEV 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 726 RDAQLRVQELEGLDVEYRGQAQaiEFLKEQISLAEKKMLDYEMLqraeaqsrqeAERLREKLLVAENRLQAAESLCSAQH 805
Cdd:pfam05483 678 EKAKAIADEAVKLQKEIDKRCQ--HKIAEMVALMEKHKHQYDKI----------IEERDSELGLYKNKEQEQSSAKAALE 745
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 3850794 806 shvIESSDLSEETIRMKETVE---GLQDKLNKRDKEVTALTSQ 845
Cdd:pfam05483 746 ---IELSNIKAELLSLKKQLEiekEEKEKLKMEAKENTAILKD 785
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
572-1000 |
1.81e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.34 E-value: 1.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 572 LKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTENMgLMDNWKSKLDSLASDHQK---------SLEDLKATLNSGPGA 642
Cdd:TIGR00606 202 VQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSRE-IVKSYENELDPLKNRLKEiehnlskimKLDNEIKALKSRKKQ 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 643 QQKEIGELKALVEGIKMEHQLELGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGLQQHWREQLEEQAAASAEAQEAQ 722
Cdd:TIGR00606 281 MEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQ 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 723 DQCRDAQLRVQELE---GLDVEYRGQAQAIEfLKEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKLLvAENRLQAAES 799
Cdd:TIGR00606 361 EHIRARDSLIQSLAtrlELDGFERGPFSERQ-IKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQA-DEIRDEKKGL 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 800 LCSAQHSHVIESSDLSEETIRMKE--TVEGLQDKLNKRDKEVTALTSQMDML--RAQVSVLENKCKSGEKKIDSLLKEKR 875
Cdd:TIGR00606 439 GRTIELKKEILEKKQEELKFVIKElqQLEGSSDRILELDQELRKAERELSKAekNSLTETLKKEVKSLQNEKADLDRKLR 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 876 RLEAELEAVSRKThDASGQLVHISQELLRKERSLNELRvllleaNRHSPGPERDLSREVHKAEWRIKEQKLKDDIRGLRE 955
Cdd:TIGR00606 519 KLDQEMEQLNHHT-TTRTQMEMLTKDKMDKDEQIRKIK------SRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRD 591
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 3850794 956 KLTGLDKEKSLSEQRRYSLIDpasppELLKLQHQLVSTEDALRDA 1000
Cdd:TIGR00606 592 RLAKLNKELASLEQNKNHINN-----ELESKEEQLSSYEDKLFDV 631
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
823-1006 |
1.92e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 1.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 823 ETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSVLENKCKSGEKKIDSLLKEKRRLEAELEAVSRKTHDASGQLVHISQEL 902
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 903 LRKERSLNELRVLLLEANRHSPGPERDLSREVHKAEWRIK-----EQKLKDDIRGLREKLTGLDKEKSLSEQRRYSLIDP 977
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQylkylAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180
....*....|....*....|....*....
gi 3850794 978 ASppELLKLQHQLVSTEDALRDALNQAQQ 1006
Cdd:COG4942 180 LA--ELEEERAALEALKAERQKLLARLEK 206
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
378-1015 |
2.14e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 2.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 378 LERAEVAKATSHICEVEKEIAllKAQHEqyVAEAEEKLQRARLLVENVRKEKvdlsNQLEEERRKVE---DLQFRVEEES 454
Cdd:TIGR02169 153 VERRKIIDEIAGVAEFDRKKE--KALEE--LEEVEENIERLDLIIDEKRQQL----ERLRREREKAEryqALLKEKREYE 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 455 IT-----KGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELA--DNRLTTVAEKSRVLQLEEELSLRRgEIEELQhcl 527
Cdd:TIGR02169 225 GYellkeKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEeiEQLLEELNKKIKDLGEEEQLRVKE-KIGELE--- 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 528 lqsgpppadhpeaAETLRLrERLLSASKEHQDDSTLLQDKYEHMLKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTEN 607
Cdd:TIGR02169 301 -------------AEIASL-ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEL 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 608 MGLmdnwKSKLDSLASDHQKSLEDLKAtlnsgpgaQQKEIGELKALVEGIKMEhQLELGNLQAKHDLETAMHGKEKEGLR 687
Cdd:TIGR02169 367 EDL----RAELEEVDKEFAETRDELKD--------YREKLEKLKREINELKRE-LDRLQEELQRLSEELADLNAAIAGIE 433
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 688 QKLQEVQEELAGLQQHWREQLEEQAAASAEAQEAQDQCRDAQLRVQELEgldveyrgqaQAIEFLKEQISLAEKkmldye 767
Cdd:TIGR02169 434 AKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVE----------KELSKLQRELAEAEA------ 497
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 768 mlQRAEAQSRQEAERLREKLL----------------VAENRLQAAESLCSAQHSHVIESSDLSEetirmKETVEGLQDK 831
Cdd:TIGR02169 498 --QARASEERVRGGRAVEEVLkasiqgvhgtvaqlgsVGERYATAIEVAAGNRLNNVVVEDDAVA-----KEAIELLKRR 570
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 832 ---------LNK-----RDKEV------------------------------TALTSQMDMLRAQV----------SVLE 857
Cdd:TIGR02169 571 kagratflpLNKmrderRDLSIlsedgvigfavdlvefdpkyepafkyvfgdTLVVEDIEAARRLMgkyrmvtlegELFE 650
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 858 nkcKSG-----EKKIDSLLKEKRRLEAELEAVSRKTHDASGQLVHISQELLRKERSLNELRVLLLEANRHSpgpeRDLSR 932
Cdd:TIGR02169 651 ---KSGamtggSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKI----GEIEK 723
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 933 EVHKAEWRikEQKLKDDIRGLREKLTGLDKEKS--LSEQRRYSLIDPASPPELLKLQHQLVSTEDALRDalNQAQQVERL 1010
Cdd:TIGR02169 724 EIEQLEQE--EEKLKERLEELEEDLSSLEQEIEnvKSELKELEARIEELEEDLHKLEEALNDLEARLSH--SRIPEIQAE 799
|
....*
gi 3850794 1011 VEALR 1015
Cdd:TIGR02169 800 LSKLE 804
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
542-911 |
2.63e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.42 E-value: 2.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 542 ETLRLRERLLSASKEHQDDSTLLQDKYEHMLKTYQTEVDKLRaanekyaQEVADLKAKVQQATTENMGLMDNWKSkldsl 621
Cdd:pfam07888 38 ECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELE-------SRVAELKEELRQSREKHEELEEKYKE----- 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 622 ASDHQKSLEDLKATLNSGPGAQQKEIGELKALVEGIKMEHQLELGNLQAKHDLETAMHGK------EKEGLRQKLQEVQE 695
Cdd:pfam07888 106 LSASSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQrkeeeaERKQLQAKLQQTEE 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 696 EL-------AGLQQHWREQLEEQAAASAEAQEAQDQCRDAQLRVQELEGLDVEYRGqaqaiefLKEQISLAEKK--MLDY 766
Cdd:pfam07888 186 ELrslskefQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRS-------LQERLNASERKveGLGE 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 767 EMLQRAEAQSRQEAERLREKLLVAENRLQAAESLCSAQHshviESSDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQM 846
Cdd:pfam07888 259 ELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALRE----GRARWAQERETLQQSAEADKDRIEKLSAELQRLEERL 334
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 3850794 847 DMLRAQVSVLENKCKSGEKKIDSLLKEKRRLEAELEAVSRKTHDASGQLVHISQELLRKERSLNE 911
Cdd:pfam07888 335 QEERMEREKLEVELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLEYIRQLEQ 399
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
403-798 |
2.91e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.65 E-value: 2.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 403 QHEQYVAEAEEKLQRARLLVENVRKEKVDLSNQLeEERRKVEdlqfrvEEESITKGDLETQTQL--EHARIGeLEQSLLL 480
Cdd:pfam17380 279 QHQKAVSERQQQEKFEKMEQERLRQEKEEKAREV-ERRRKLE------EAEKARQAEMDRQAAIyaEQERMA-MEREREL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 481 EKAQAERLLRELADNRLTTVA-EKSRVLQLeEELSLRRGEIEElqhcllqsgpppadhpeaaetlRLRERLLSASKEhqd 559
Cdd:pfam17380 351 ERIRQEERKRELERIRQEEIAmEISRMREL-ERLQMERQQKNE----------------------RVRQELEAARKV--- 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 560 dsTLLQDKYEHMLKTYQTEVDKLRAANEKYAQEvadlkakvqqattenmglmdnwksKLDSLASDHQKSLEDLKatlnsg 639
Cdd:pfam17380 405 --KILEEERQRKIQQQKVEMEQIRAEQEEARQR------------------------EVRRLEEERAREMERVR------ 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 640 pgaqqkeigelkalVEGIKMEHQLELGNlQAKHDLETAMHGKEKEGLRQKLQEVQEELAgLQQHWREQLEEQAAASAEAQ 719
Cdd:pfam17380 453 --------------LEEQERQQQVERLR-QQEEERKRKKLELEKEKRDRKRAEEQRRKI-LEKELEERKQAMIEEERKRK 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 720 EAQDQCRDAQLRVQELEgldveyrGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEA-ERLREKL-LVAENRLQAA 797
Cdd:pfam17380 517 LLEKEMEERQKAIYEEE-------RRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAmEREREMMrQIVESEKARA 589
|
.
gi 3850794 798 E 798
Cdd:pfam17380 590 E 590
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
349-521 |
3.72e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.26 E-value: 3.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 349 ARKISGTIALQEALKEKQQHIEQLLAErdLERAEVAKATSHicEVEKEIALLKAQHEQYVAEAEEKLQRARLLVENVRKE 428
Cdd:pfam17380 371 AMEISRMRELERLQMERQQKNERVRQE--LEAARKVKILEE--ERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAR 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 429 KVDLSNQLEEERR-KVEDLQFRVEEESITKGDLET----QTQLEHARIGELEQSL------LLEKAQAERLLRELADNRL 497
Cdd:pfam17380 447 EMERVRLEEQERQqQVERLRQQEEERKRKKLELEKekrdRKRAEEQRRKILEKELeerkqaMIEEERKRKLLEKEMEERQ 526
|
170 180
....*....|....*....|....
gi 3850794 498 TTVAEKSRVLQLEEElslRRGEIE 521
Cdd:pfam17380 527 KAIYEEERRREAEEE---RRKQQE 547
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
369-510 |
3.73e-03 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 40.51 E-value: 3.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 369 IEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRA--RLLVENVRKEKVD--LSNQLEEERRKVE 444
Cdd:pfam09787 49 LEELRQERDLLREEIQKLRGQIQQLRTELQELEAQQQEEAESSREQLQELeeQLATERSARREAEaeLERLQEELRYLEE 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 445 DL---------QFRVEEESITKGDLE---------TQTQLEhARIGELEQSLLLEKAQAERLLREladnrlttvaEKSRV 506
Cdd:pfam09787 129 ELrrskatlqsRIKDREAEIEKLRNQltsksqsssSQSELE-NRLHQLTETLIQKQTMLEALSTE----------KNSLV 197
|
....
gi 3850794 507 LQLE 510
Cdd:pfam09787 198 LQLE 201
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
647-799 |
4.38e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 4.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 647 IGELKALVEGIKMEHQLELGNLQAKHDLETAmhGKEKEGLRQKLQEVQEELAGLQQH--WREQLEEQAAASAEAQEAQDQ 724
Cdd:COG4717 70 LKELKELEEELKEAEEKEEEYAELQEELEEL--EEELEELEAELEELREELEKLEKLlqLLPLYQELEALEAELAELPER 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 725 CRDAQLRVQELEGLDVEYRGQAQAIEFLKEQISLAEKKML------------DYEMLQRAEAQSRQEAERLREKLLVAEN 792
Cdd:COG4717 148 LEELEERLEELRELEEELEELEAELAELQEELEELLEQLSlateeelqdlaeELEELQQRLAELEEELEEAQEELEELEE 227
|
....*..
gi 3850794 793 RLQAAES 799
Cdd:COG4717 228 ELEQLEN 234
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
357-883 |
4.84e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.79 E-value: 4.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 357 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEqyvaEAEEKLQRARLLVEnvrkekvDLSNQL 436
Cdd:PRK02224 276 ELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDE----ELRDRLEECRVAAQ-------AHNEEA 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 437 EEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEELSLR 516
Cdd:PRK02224 345 ESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDEL 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 517 RGEIEELQhcllqsgpppADHPEAAETLRLRERLLSASKEHQDDSTLLQDKYEHMLKTYQTEVDKLRAANEKYAQEVADL 596
Cdd:PRK02224 425 REREAELE----------ATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEV 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 597 KAKVQQAttENMGLMDNWKSKLDSLASDHQKSLEDLKATLNsgpgaqqkeigelkalvegikmehqlelgnlqakhdlet 676
Cdd:PRK02224 495 EERLERA--EDLVEAEDRIERLEERREDLEELIAERRETIE--------------------------------------- 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 677 amhgkEKEGLRQKLQEVQEELAGLQQHWREQleeqaaasaeAQEAQDQCRDAQLRVQELEGLDVEYRGQAQAIEFLKEQI 756
Cdd:PRK02224 534 -----EKRERAEELRERAAELEAEAEEKREA----------AAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLL 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 757 SLAEKKmldyemlqraeaqsRQEAERLREKLL-VAENRLQAAESLCSAQHSHVIESSDLSEETI-RMKETVEGLQDKLNK 834
Cdd:PRK02224 599 AAIADA--------------EDEIERLREKREaLAELNDERRERLAEKRERKRELEAEFDEARIeEAREDKERAEEYLEQ 664
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 3850794 835 RDKEVTALTSQMDMLRAQVSVLENKCKSgekkIDSLLKEKRRLEAELEA 883
Cdd:PRK02224 665 VEEKLDELREERDDLQAEIGAVENELEE----LEELRERREALENRVEA 709
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
774-913 |
7.97e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.14 E-value: 7.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 774 AQSRQEAERLREKLLVAENRLQAAESLCSAQHshvIESSDLSEETIRMKETVEGLQDKLNKRD---------KEVTALTS 844
Cdd:COG1579 20 DRLEHRLKELPAELAELEDELAALEARLEAAK---TELEDLEKEIKRLELEIEEVEARIKKYEeqlgnvrnnKEYEALQK 96
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 3850794 845 QMDMLRAQVSVLENKCKSGEKKIDSLLKEKRRLEAELEAVSRKTHDASGQLVHISQELLRKERSLNELR 913
Cdd:COG1579 97 EIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAER 165
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
349-971 |
8.05e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.34 E-value: 8.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 349 ARKISGTIALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQH--EQYVAEAEEKLQRArllvENVR 426
Cdd:TIGR00618 289 ARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRrlLQTLHSQEIHIRDA----HEVA 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 427 KEKVDLSNQLEEERRKVEDLQfrveeesitkGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKsrv 506
Cdd:TIGR00618 365 TSIREISCQQHTLTQHIHTLQ----------QQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKK--- 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 507 lqlEEELSLRRGEIEELQhcllqsgpppadHPEAAETLRLRERLLSASKEHQDDST-LLQDKyehmlKTYQTEVDKLRAA 585
Cdd:TIGR00618 432 ---QQELQQRYAELCAAA------------ITCTAQCEKLEKIHLQESAQSLKEREqQLQTK-----EQIHLQETRKKAV 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 586 NEKYAQEVADLKAKVQQATTE---------NMGLMDNWKSKLDSLASDHQKSLEDLKATLNSgpgaqqkEIGELKALVEG 656
Cdd:TIGR00618 492 VLARLLELQEEPCPLCGSCIHpnparqdidNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTS-------ERKQRASLKEQ 564
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 657 IKMEHQLELGNLQAKHDLETAMhgkekEGLRQKLQEVQEELAGLQQHWREQLEEQAAASAEAQEAQDQCRDAQlrvqele 736
Cdd:TIGR00618 565 MQEIQQSFSILTQCDNRSKEDI-----PNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRL------- 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 737 gldveYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKllvAENRLQAAESLcSAQHSHVIESSDLSE 816
Cdd:TIGR00618 633 -----HLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLAS---RQLALQKMQSE-KEQLTYWKEMLAQCQ 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 817 ETIRMKETVEGLQDKLnkRDKEVTALTSQMDMLRAQVSVLENKCKSGEKKIDSLLKEK-----RRLEAELEAVSRKThda 891
Cdd:TIGR00618 704 TLLRELETHIEEYDRE--FNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARteahfNNNEEVTAALQTGA--- 778
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 892 sgQLVHISQELLRKERSLNELRVLL--LEANRHSPGPERDLSREVHKAEWRIKEQKLKDDIRGLREKLTGLDKEKSLSEQ 969
Cdd:TIGR00618 779 --ELSHLAAEIQFFNRLREEDTHLLktLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEE 856
|
..
gi 3850794 970 RR 971
Cdd:TIGR00618 857 CS 858
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
406-922 |
9.52e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 39.81 E-value: 9.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 406 QYVAEAEEKLQRARLLVENVRKEKVDLS------NQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLL 479
Cdd:pfam10174 185 RRIAEAEMQLGHLEVLLDQKEKENIHLReelhrrNQLQPDPAKTKALQTVIEMKDTKISSLERNIRDLEDEVQMLKTNGL 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 480 LEKAQAERLLRELADNRLTTVAEKSRVLQLEEELSLRRGEIEELQHCLlqsgpppadhpeaaETLRLRErllSASKEHQD 559
Cdd:pfam10174 265 LHTEDREEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQTKL--------------ETLTNQN---SDCKQHIE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 560 DSTLLQDKYEHMLKTYQTEVDKLRAANE----------KYAQEVADLKAKVQQATTENMGLMDNWKSKLDSLasdhQKSL 629
Cdd:pfam10174 328 VLKESLTAKEQRAAILQTEVDALRLRLEekesflnkktKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVL----QKKI 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 630 EDLKATLNSgpgaQQKEIGELKALVEGIK------------MEHQLE-----LGNLQAKHDLETAMHGKEKEGLRQKLQE 692
Cdd:pfam10174 404 ENLQEQLRD----KDKQLAGLKERVKSLQtdssntdtalttLEEALSekeriIERLKEQREREDRERLEELESLKKENKD 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 693 VQEELAGLQQHWREqleeqaaasaeaqeaqdqcrdaqlrvQELEGLDVEYRGQAQAIEFLKEQISLaekKMLDYEMLQRA 772
Cdd:pfam10174 480 LKEKVSALQPELTE--------------------------KESSLIDLKEHASSLASSGLKKDSKL---KSLEIAVEQKK 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 773 E-----------AQSRQEAERLREKLLvaeNRLQAAESLCSaqhSHVIESSDLSEETIRMKETVEGLQDKLNKRDKEVTA 841
Cdd:pfam10174 531 EecsklenqlkkAHNAEEAVRTNPEIN---DRIRLLEQEVA---RYKEESGKAQAEVERLLGILREVENEKNDKDKKIAE 604
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 842 LTSQMDMLRAQVSVLENKCKSGE----KKIDSLLKEKRRLEAELEAVSR--KTHDASGQLVHISQELLRKERSLNELRVL 915
Cdd:pfam10174 605 LESLTLRQMKEQNKKVANIKHGQqemkKKGAQLLEEARRREDNLADNSQqlQLEELMGALEKTRQELDATKARLSSTQQS 684
|
....*..
gi 3850794 916 LLEANRH 922
Cdd:pfam10174 685 LAEKDGH 691
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
392-513 |
9.60e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.06 E-value: 9.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3850794 392 EVEKEIALLKAQHEQYVAEAE----EKLQRARLLVENVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLEtqtQLE 467
Cdd:COG0542 415 ELERRLEQLEIEKEALKKEQDeasfERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQRYGKIP---ELE 491
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 3850794 468 hARIGELEQSLllekAQAERLLRELAD----------------NRLTTvAEKSRVLQLEEEL 513
Cdd:COG0542 492 -KELAELEEEL----AELAPLLREEVTeediaevvsrwtgipvGKLLE-GEREKLLNLEEEL 547
|
|
| |
